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Author SHA1 Message Date
George Hartzell
afbe81b455 Add version info for git-lfs v2.0.2 (#3885) 2017-04-18 11:48:53 -05:00
Kelly (KT) Thompson
fad4ce21cc Provide version 3.8.0 of CMake. (#3882) 2017-04-18 10:59:59 -05:00
Javier
7ed99a4c86 Adding new package: sas (#3877) 2017-04-18 07:07:07 -05:00
Denis Davydov
5558bec14e ape: constrain libxc version (#3876) 2017-04-18 07:03:48 -05:00
Mark Olesen
c65d0775cf ADIOS - add bzip2 transport, python patch not applicable to adios 1.9.0 (#3874) 2017-04-18 07:00:39 -05:00
sknigh
d17b5eb2b9 Added expat dependency to apr-util (#3871) 2017-04-18 06:57:49 -05:00
健美猫
4e95525280 Add patched openfst-1.4.1 and kaldi@c024e8 required by CNTK. (#3806) 2017-04-18 06:56:18 -05:00
Denis Davydov
fc938962fa octave: add 4.2.1 (#3872) 
Also switch to arpack-ng, which is maintained and has bugfixes,
whereas the original arpack code is abandoned.
 2017-04-18 06:55:11 -05:00
Denis Davydov
89f531c18a gmsh: add 3.0.1 (#3873) 2017-04-18 11:30:17 +02:00
Adam J. Stewart
6d7b386199 Add a py-fiscalyear package (#3864) 
* Add a py-fiscalyear package

* Declare supported Python versions
 2017-04-17 16:46:52 -05:00
Adam J. Stewart
ebf30d95cd Add latest numpy release (#3869) 2017-04-17 15:45:52 -05:00
Denis Davydov
0ed18de836 opneblas: fix compilation with clang (#3862) 
* opneblas: fix compilation with clang

* indentation
 2017-04-17 09:16:18 -05:00
Michael Kuhn
3331c042af Fix udunits2 (#3809) 2017-04-17 09:15:02 -05:00
Adam J. Stewart
cc747d6b6f Remove redundant cmake dependencies (#3860) 2017-04-16 12:23:26 -05:00
Christoph Junghans
675a67e2ca random123: put uniform.hpp in right subfolder (#3858) 2017-04-16 08:47:46 -05:00
Christoph Junghans
a3378ccd3d charm: add support for shared linking (#3859) 2017-04-16 08:47:00 -05:00
Christoph Junghans
fdc8f71a5c trilinos: allow to compile exodus (#3857) 2017-04-15 21:57:44 -05:00
Christoph Junghans
1d514f48bc random123: install uniform.hpp as well (#3856) 2017-04-15 21:57:19 -05:00
Erik Schnetter
62fb1ad990 hpx5: Add patch to select Spack compiler on Cray (#3798) 2017-04-14 22:38:22 -05:00
Christoph Junghans
caad110757 New package: flecsi (#3780) 
* New package: flecsi

* make fetch independent of #3779
 2017-04-14 17:56:36 -05:00
healther
bd6a90742c Add package gccxml (#3836) 
* Add package gccxml

* Fix spec undefinedwq

* fix versions

* fix patch when statement

* fix flake8...
 2017-04-14 17:54:19 -05:00
Christoph Junghans
7d655f77ee New package: boost-mpl-cartesian_product (#3841) 2017-04-14 17:53:35 -05:00
Christoph Junghans
9e693336ad New package: tut (#3844) 2017-04-14 17:52:57 -05:00
George Hartzell
2ed2469b11 Add a package for FLASh (bioinformatics) (#3848) 
Add a package for FLASh.
 2017-04-14 17:51:36 -05:00
Adam J. Stewart
acad217cba Add a py-pkgconfig package (#3815) 2017-04-14 13:14:45 -05:00
George Hartzell
a4311f242a vim wasn't linking against ncurses (#3838) 
See #3829.  Vim's configure was searching for ncurses
instead of ncursesw.
 2017-04-14 13:13:36 -05:00
Christoph Junghans
9626a042f8 New package: PEGTL (#3839) 2017-04-14 13:13:15 -05:00
Christoph Junghans
ef64734192 New package: pstreams (#3840) 2017-04-14 12:18:49 -05:00
Jean-Paul Pelteret
a0217747d0 Readline package: Add ncurses library directory to link line. (#3802) 
Resolves a issue with finding the ncurses library on MacOS.
 2017-04-14 12:17:45 -05:00
Christoph Junghans
9922c374aa New package: MAD's numdiff (#3811) 2017-04-14 11:18:32 -05:00
Adam J. Stewart
5ce0126c91 Prevent users from building Score-P on macOS (#3825) 
* Prevent users from building Score-P on macOS

* Add link to original reporting issue
 2017-04-14 08:38:34 -07:00
Adam J. Stewart
3f21b82815 Add variant to mvapich2 to control thread level (#3832) 2017-04-14 08:14:19 -07:00
Adam J. Stewart
331f42b991 Convert Image-Magick to AutotoolsPackage (#3828) 2017-04-14 08:13:47 -07:00
Adam J. Stewart
91d82c44e6 Remove mawk dependency from ncurses (#3782) 2017-04-14 09:38:13 -05:00
健美猫
102dcbcbd4 Add cub-1.4.1 required by cntk. (#3819) 2017-04-14 08:29:18 -05:00
健美猫
e636bf05fc A new package: bowtie. (#3837) 2017-04-14 08:16:51 -05:00
Christoph Junghans
c08965701f New package: h5part (#3821) 2017-04-13 15:00:17 -05:00
Christoph Junghans
90f46186f9 New package: pugixml (#3830) 2017-04-13 14:59:32 -05:00
Michael Kuhn
afdc2f4182 Fix adios (#3814) 
adios currently only supports zfp <= 0.5.0 due to an API change.
 2017-04-12 16:58:18 -05:00
George Hartzell
5b65380f98 Add package for nginx@1.12.0 (#3810) 
* Add package for nginx@1.12.0

Includes support for:
- zlib
- pcre (and pcre-jit)
- openssl (https support)

Built and basics tested on CentOS 7.  I haven't tested the `https`
support [yet].

* Include final bit of doc string sentence.

I trimmed the docstring that I lifed from https://nginx.org/en a bit
too aggressively and left a '...' to remind me to fix it.

Apparently I need more obvious reminders.

Thanks @davydden!
 2017-04-12 15:27:46 -05:00
Jean-Paul Pelteret
0af57ce345 Apply a patch to allow valgrind 3.12 to build on MacOS >= 10.11 (#3808) 2017-04-12 07:43:14 -05:00
Javier
7203a3c055 Update xrootd versions (#3807) 
* Update xrootd versions

* Removing unnecessary url_for_version method
 2017-04-12 06:50:31 -05:00
Nils Deppe
701965fb2a brigand: New Package (#3801) 2017-04-11 22:14:54 -05:00
Christoph Junghans
56ae607a39 New package: f90cache (#3804) 2017-04-11 20:13:41 -05:00
Nils Deppe
d7b5726fdc blaze: New Package (#3803) 2017-04-11 17:08:26 -05:00
Gregory Lee
9a4077c272 added stat version 3.0.1 (#3800) 2017-04-11 14:10:09 -05:00
Adam J. Stewart
ed86dc2db6 Help cscope find ncursesw library (#3785) 
* Help cscope find ncursesw library

* Overwrite CURSES_LIBS at build time
 2017-04-11 14:09:29 -05:00
Erik Schnetter
cea4352555 spherepack: New package (#3797) 2017-04-11 13:15:41 -05:00
Erik Schnetter
4d18f9f233 pocl: New version 0.14 (#3799) 2017-04-11 13:15:19 -05:00
Javier
e55c9a0eb8 Update ccache version to 3.3.4 (#3794) 
* Update ccache version to 3.3.4

* Flake8 fix
 2017-04-11 09:32:31 -05:00
George Hartzell
47aa8053e9 Install the shell completion scripts (#3784) 
* Install the shell completion scripts

Install the `git-completion.{bash,tcsh,zsh}` and `git-prompt.sh` into
`$(spack location -i git)/share/` (aka `prefix.share/`).

* Use copy_tree to copy all the files

The dest dir already exists, so install_tree()'s not an option.
 2017-04-11 07:39:03 -05:00
healther
74b1f2b860 Fixup gcc@4.9{0,1,2} build on darwin (#3789) 2017-04-11 07:37:44 -05:00
Brian Van Essen
808e9b4649 Added a package for the MDAnalysis toolkit. (#3576) 
* Added a package for the MDAnalysis toolkit.

* Added the dependency on setuptools.

* Added the rest of the dependencies to the py-mdanalysis package.  Also
added the griddataformats and seaborn packages to satisfy requirements.

* Removed seaborn package since it has been recently added.

* Fixed flake8 error

* Removed inadvertent commits.

* Cleaned up reviewers feedback.
 2017-04-10 21:02:32 -05:00
Adam J. Stewart
4627655704 Rename libson-c to json-c, add new version (#3776) 2017-04-10 15:09:59 -05:00
George Hartzell
4acc36d188 Fix build, add version info for 1.3.0 (#3773) 
Update the package recipe w.r.t. AutotoolsPackage changes,
now builds "out of source".

Update the package with version info for 1.3.0.

> Mosh 1.3.0 released, with John Hood as release lead. The release includes broader platform compatibility, robustness improvements, better testing, and fixes for excess CPU consumption in some cases. We have switched to semver.org-style versioning and will increment the minor version number whenever we add new functionality. (In our previous practice, this release would probably have been called “1.2.7.”)

Tested on CentOS 7.
 2017-04-10 11:12:49 -05:00
healther
5008973d99 Fix namespaced python packages (#3757) 
* Fix namespaced python packages

* Update package.py

* Update package.py

* fix typo
 2017-04-10 08:12:57 -05:00
健美猫
77673f4c42 A new package: cudnn. (#3770) 2017-04-10 07:27:15 -05:00
健美猫
87818abf21 A new pacakge: hstr(hh). (#3769) 2017-04-09 11:56:49 -05:00
Adam J. Stewart
bd9213a55f Append system PKG_CONFIG_PATH on Cray instead of prepend (#3766) 2017-04-08 20:50:16 -05:00
Michael Kuhn
b91bf0e067 Update libbson and libmongoc to 1.6.2 (#3767) 2017-04-08 06:40:55 -05:00
George Hartzell
bf9dcc4a10 Add info for go@1.8.1 (#3765) 2017-04-07 16:50:08 -05:00
Mark C. Miller
a2afe984c0 Adding ZFP version 0.5.1 and variant for uint8 bit stream word type (#3753) 
* adding 0.5.1 and variant for uint8 bit stream word type

* Revisions as per davydden

* fixing style (flake8) issues

* - switched to derive from MakefilePackage
- fixed typo in variant check
- Confirmed installs correctly with bswtuint8 variant

* added build method; changed zfp_incdir to incdir
 2017-04-07 15:00:32 -05:00
Massimiliano Culpo
28e20313ac lmod: added new version (#3763) 2017-04-07 14:32:32 -05:00
Todd Gamblin
d995f9a314 Disable OpenSSL test dependency until we have proper support. (#3760) 2017-04-07 14:14:02 -05:00
Adam J. Stewart
ed4f276b68 Add a package for the NAS Parallel Benchmarks (NPB) (#3762) 2017-04-07 14:10:29 -05:00
Matthew Scott Krafczyk
7c4ed0a70a Add the rockstar package (#3680) 
* Add the rockstar package

* Add rockstar to yt.

* Correct signature of prep_yt.

* Correct rockstar package installation process

Needed to change the way the necessary prefixes are found as well as
how the completed package is copied.

There should probably be a way to do the copying in a more 'spack' way.

* Add license

* Add description.

* Set no hdf5 variant as default.

* Use copy_tree for copying files

* Use MakefilePackage

* Address concerns from @adamjstewart

* Fix flake8 errors.
 2017-04-07 13:17:19 -05:00
Jean-Paul Pelteret
c6777ddf74 Update LLVM to version 4.0.0 (#3683) 
* Update LLVM to version 4.0.0

* Add arguments to prevent lldb, polly building when using ~<variant>
 2017-04-07 13:15:14 -05:00
健美猫
3ad6754c1a Add the 'shared' variant for protobuf. (#3703) 2017-04-07 13:11:22 -05:00
Mark Olesen
f166f57f09 remove mxml CFLAGS option that was breaking configure (fixes #3700) (#3706) 
- provide urls for versions 2.7, 2.6, 2.5 (archive copies)
 2017-04-07 13:06:09 -05:00
Milton Woods
04f20320f4 subversion: spec.satisfies('^swig') does not work; replace spec.satisfies by "in spec" (#3662) 2017-04-07 13:03:57 -05:00
Axel Huebl
a8bd69f01c Package: ISAAC (#3733) 
Adds the [ISAAC](https://github.com/ComputationalRadiationPhysics/isaac)
in situ volume rendering library. The ISAAC library can be build with
render/filter kernels for Nvidia GPUs via CUDA or with a more general
backend via [Alpaka](https://github.com/ComputationalRadiationPhysics/alpaka)
with support for Nvidia GPUs (via CUDA) and multicore CPUs.

Since alpaka is not yet part of spack, the second variant is still
commented out.

Packages

- `isaac`: header-only library with dependencies to other C++ libraries
           that is then used in simulations
- `isaac-server`: stand-alone executable that connects N simulations with M
                  clients in a `N simulations:1 server` and
                  `1 server:M clients` fashion

(ISAAC clients simply speak websockets/JSON and are usually
[HTML/JS pages](https://github.com/ComputationalRadiationPhysics/isaac/tree/v1.2.0/client))

Downstream Usage

PIConGPU uses ISAAC for in situ visualization.

References

- [Repo](https://github.com/ComputationalRadiationPhysics/isaac) (LGPLv3+)
- [Documentation](http://computationalradiationphysics.github.io/isaac/)
- [Talk at GTC2016](http://on-demand.gputechconf.com/gtc/2016/video/S6294.html)
 2017-04-07 11:04:45 -05:00
Axel Huebl
7b37620e25 mallocMC: Spack Package (#3745) 
Adds a package for mallocMC, a memory allocator for many core
architectures.

This project provides a framework for fast memory managers on
many core accelerators. Currently, it supports NVIDIA GPUs of
compute capability sm_20 or higher through the ScatterAlloc
algorithm. mallocMC is header-only.

Downstream Dependencies

PIConGPU and other projects of HZDR's
*Computational Radiation Physics* group

References

- Markus Steinberger, Michael Kenzel, Bernhard Kainz and Dieter Schmalstieg.
  *ScatterAlloc: Massively parallel dynamic memory allocation for the GPU*,
  Innovative Parallel Computing (InPar), 2012,
  https://doi.org/10.1109/InPar.2012.6339604

- Carlchristian Eckert.
  *Enhancements of the massively parallel memory allocator ScatterAlloc and its adaption to the general interface mallocMC*,
  Junior Thesis (grosser Beleg), 2014,
  http://dx.doi.org/10.5281/zenodo.34461
 2017-04-07 11:03:58 -05:00
Adam J. Stewart
54d0f9157d Tell libedit to link to -lncursesw (#3752) 2017-04-07 11:03:19 -05:00
Christoph Junghans
f1943589b5 gromacs: added 5.1.4 and 2016.3 (#3758) 2017-04-07 10:59:14 -05:00
Adam J. Stewart
16fb872f84 Fix ncurses support in bash package (#3735) 2017-04-07 08:43:13 -05:00
healther
1d21a11ff4 fix dependencies of py-pynn (#3756) 2017-04-07 06:46:46 -05:00
Massimiliano Culpo
10c395b2f5 Abinit: a few modernizations for the package and its dependencies (#3699) 
* libxc: added libs interface

* hdf5: added libs interface, added conflicts

* abinit: modernized package to use build interface

* netcdf-fortran: added libs interface

* abinit: added version 8.2.2
 2017-04-07 11:18:34 +02:00
Axel Huebl
030127a071 cuda_memtest: Package of CRP (#3747) 
This adds a maintained version of the (since 2012)
stalled original project.

https://github.com/ComputationalRadiationPhysics/cuda_memtest

Nvidia's NVML (via the GPU deployment kit) could also be
added, providing serial number output of failing GPUs
for multi-GPU nodes.
 2017-04-06 22:05:13 -05:00
Christoph Junghans
e3bfb79824 Add Votca packages (#3748) 
* A new package: votca-tools

* A new package: votca-csg
 2017-04-06 22:04:51 -05:00
Todd Gamblin
279d410758 Add package for OpenSSH (#3750) 2017-04-06 21:37:49 -05:00
Christoph Junghans
10ceed3b66 A new package: legion (#3738) 2017-04-06 17:55:09 -05:00
George Hartzell
3232c16d0c Update version info to include v1.5.5 (#3743) 
* Update version info to include v1.5.5

* Clean up url specifications.
 2017-04-06 17:54:36 -05:00
Adam J. Stewart
7c41d9c6db spglib requires setuptools during runtime (#3744) 2017-04-06 17:54:07 -05:00
Denis Davydov
5c0fe2829b deal.ii: add 8.5.0 (#3741) 2017-04-06 16:29:40 -05:00
Axel Huebl
f31a38532f libSplash & PNGwriter: CMakePackage (#3739) 
Use new CMakePackage base class
 2017-04-06 21:33:19 +02:00
Michael Kuhn
95e401fe80 Fix wx (#3734) 
It is missing a pkg-config dependency.
 2017-04-06 13:54:57 -05:00
Axel Huebl
951f4bf514 PNGwriter: 0.6.0 (#3732) 
Adds the latest release of PNGwriter.
 2017-04-06 12:31:55 -05:00
Todd Gamblin
eb9cb2d4a1 Fix libdwarf/elfutils conflict 2017-04-06 09:42:46 -07:00
健美猫
85f937525d A new package: xqilla. (#3731) 2017-04-06 10:54:16 -05:00
Jimmy Tang
00fb0dd6c6 Openmpi cuda support (#3725) 
* Update cuda to latest ga2 release

* Add CUDA support to openmpi

* Use spec's lib directories for cuda

* flake8 compliance
 2017-04-06 16:12:54 +02:00
Michael Kuhn
b81a50b4e3 Add zip package (#3715) 2017-04-06 08:12:51 -05:00
Michael Kuhn
095f57409c Fix magics (#3721) 
- magics requires perl and perl-xml-parser.
- xml2cc_new.pl uses /usr/bin/perl by default.
 2017-04-06 08:11:32 -05:00
Josh Asplund
048b6fc454 Fixes patch paths for earlier boost versions (#3712) 
* Fixes patch paths for earlier boost versions

The directory structure of boost changed at version 1.56.0, so the patch
being used for python support did not work on earlier versions. This
adds another patch that matches earlier versions.

* Removes commented out code
 2017-04-05 16:26:22 -05:00
Adam J. Stewart
745e2ce52f Fixes needed to build htop (#3691) 
* Fixes needed to build htop

* Build libncursesw.so, not libncurses.so

* Remove htop hack now that it is picking up newer ncurses

* Tell packages to link to new ncursesw libraries
 2017-04-05 16:03:11 -05:00
Milton Woods
87eafaa125 subversion: provide checksums for versions 1.8.17 and 1.9.5 (#3663) 
* subversion: provide checksums for versions 1.8.17 and 1.9.5

* subversion: release versions sorted from newest to oldest
 2017-04-05 15:15:22 -05:00
Denis Davydov
bccc73c6c9 petsc trilinos: fix Scalapack via MKL (#3702) 
* petsc trilinos: fix Scalapack via MKL

* indentation
 2017-04-05 14:55:28 -05:00
Mark Olesen
aa63bc6f34 update versions for scalasca and related tools (#3697) 
- clean up fetch urls

- inherit from AutotoolsPackage instead of Package

- explicit fPIC flags look suspicious, but leave them in there.

- in scalasca, use the cube version that is implicit from
  the scorep dependency instead of specifying it twice.
 2017-04-05 14:54:40 -05:00
Michael Kuhn
a813764874 Fix libxpm (#3704) 
It tries to use gettext but fails because it does not explicitly link
against libintl.
 2017-04-05 14:50:42 -05:00
Michael Kuhn
9dcd6052cb Fix ncl (#3708) 
- Add patch to make ncl compile with hdf5 1.10.
- Add missing dependencies to make ncl compile without errors.
 2017-04-05 13:59:26 -05:00
Adam J. Stewart
cd1c88c519 Add stress package (#3695) 2017-04-05 11:48:56 -05:00