Commit graph

10673 commits

Author SHA1 Message Date
Benjamin Fovet
d909c6d89d
Add new package CMinpack (#15606)
* Add new package CMinpack

* Add link to CMinpack PR#21
2020-03-27 14:29:49 -05:00
JeromeDuboisPro
2b915dc517
Adding mesa-glu 9.0.1 (2019) (#15705)
Adding mesa-glu 9.0.1 (2019)
2020-03-27 14:28:51 -05:00
iarspider
cd82228c78
py-multiprocess: add new version (0.70.9) and dependencies (#15710)
* py-multiprocess: add new version (0.70.9) and dependencies

* Add new version of py-dill

* Update package.py

* Update package.py
2020-03-27 12:57:29 -05:00
Daryl W. Grunau
f40080934e
New package lesstif (#15703)
* new package lesstif

* incorporate more of the Homebrew build recipe

Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-03-27 12:57:04 -05:00
Adam J. Stewart
b6d2abf885
py-grpcio: add new version (#15713) 2020-03-27 11:43:16 -05:00
Sinan
b397af5d9c
Package/qscintilla: python bindings via extend path (#15599)
* build python bindings within qscintilla package via extend_path trick

* add todo

* reflect new setup also in py-pyqt4 package

* get rid of qscintilla dependency

* also tweak qgis for the new setup

* generalize the building of python bindings

* generalize building of pythong bindings to all qt versions

* add qsci_api variant

* add qsci_variant for pyqt4 package as well; add comment

* pyqt dependency should build with +qsci_api variant enabled

* fix bugs

* improve style

* reflect recent changes

* flake8

* improve style

* more flake8

* more flake8

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-27 11:42:58 -05:00
Nichols A. Romero
c5e74fef32
QMCPACK Update March 2020 - Part 2 (#15616)
* Add some comments explaining the choice of flag_handler.

* Fix QMCPACK install method.

* Add support for ppconvert. This requires a custom build method.

* Fix QMCPACK setup_run_environment. Nexus should be properly supported now.

* Cleaner way to check for intel-mkl in spec.

* Remove build method and use build_targets property instead.

* Additional fixed for install method. Effectively restoring the original install method.

* Add the missing backslash to fix directory names.

* Update var/spack/repos/builtin/packages/qmcpack/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/qmcpack/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/qmcpack/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Omit these conflicts on mkl variants for now, will hopefully be supportted with new concretizer in a couple of months.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-27 11:38:28 -05:00
darmac
d7454baa55
util-linux: add libmount variant (#15631) 2020-03-27 11:35:08 -05:00
darmac
c3e41444ff
Add new package: zfs (#15632) 2020-03-27 11:34:03 -05:00
Hector
fb5afb4cb4
add source-highlight variant to gdb (#15634) 2020-03-27 11:33:33 -05:00
noguchi-k
0ca5ad237a
denovogear: fixed comparison error (#15638) 2020-03-27 11:29:30 -05:00
iarspider
953bd04cb3
Bison: add version 3.3.2 (#15707) 2020-03-27 11:21:42 -05:00
iarspider
0f8148b258
py-attrs: add version 19.3.0 (#15709) 2020-03-27 11:16:40 -05:00
Dr. Christian Tacke
16f104aafe
intel-tbb: new download url, fix sha256 (#15675)
intel moved the repository around.
github changes the prefix inside the tar according to the
repository name.

So all sha256 have changed!

I verified that the tar contents for 2019.4 did not change
except for the prefix.
2020-03-27 10:59:05 -05:00
Amjad Kotobi
6e82761d4e
New package Anaconda2 (#15676) 2020-03-27 10:58:50 -05:00
Andrew W Elble
108a0c99f1
TensorFlow: Make horovod compilation work (#15692)
* TensorFlow: Clean up/simplify the installation, make sure the headers are
installed so that horovod can find them successfully. Fix the 2.0.* builds.

* Backport of 837c8b6b upstream
"Remove contrib cloud bigtable and storage ops/kernels."
Allows 2.0.* releases to build with '--config=nogcp'

* comment regarding tensorflow issue #31187

Co-authored-by: Andrew W Elble <aweits@skl-a-00.rc.rit.edu>
2020-03-27 10:51:04 -05:00
Toyohisa Kameyama
7df7b65cec
ppOpen-AT: New package (#15649)
* ppOpen-AT: New package

* use install instead of install-after.

* use install_tree.

* forget remove mkdir.
2020-03-27 08:16:48 -05:00
Brian Homerding
420b5dd4b9
MpiP: adding variant to build shared libraries (#10410) 2020-03-27 12:07:57 +01:00
darmac
e1238bae90
dpdk: added new package at v20.02 (#15635) 2020-03-27 10:21:16 +01:00
darmac
6a33c269bd
sshpass: added new package (#15704) 2020-03-27 08:44:41 +01:00
iarspider
97c3addad3
cppgsl: added v2.1.0 (#15696)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-27 08:42:50 +01:00
Fabian Brandt
dcc4aabce1
New package libtlx (#15650)
* New package libtlx

* Replaced dash characters with ascii dash
2020-03-26 22:55:27 -05:00
Michael Kuhn
5f06e50902
meson: Add 0.53.2 and fix setuptools dependency (#15674)
py-setuptools is actually required for running meson.
2020-03-26 22:50:20 -05:00
Hector
0ebed5a618
fix gdb installation (#15679)
* fix gdb installation

* add reference url
2020-03-26 22:45:47 -05:00
Sinan
2828815a49
add new versions (#15688)
Co-authored-by: Sinan81 <Sinan81@github>
2020-03-26 22:41:57 -05:00
noguchi-k
5cb4db8570
gtkorvo-dill: fix argument type of clear_cache (#15689) 2020-03-26 22:41:25 -05:00
Toyohisa Kameyama
8293660217
ppOpen-MATH/MP: New package. (#15690)
* ppOpen-MATH/MP: New package.

* Fix quote.
2020-03-26 22:40:22 -05:00
Seth R. Johnson
e989c05cd0
Add include-what-you-use (#15691) 2020-03-26 22:38:56 -05:00
iarspider
209c7e3ddd
xrootd: new version (4.11.2) (#15694) 2020-03-26 22:37:56 -05:00
iarspider
bbc76c3551
fmt: new version (6.1.2) (#15695) 2020-03-26 22:37:33 -05:00
iarspider
640df9c20b
range-v3: add new version (0.10.0) (#15697) 2020-03-26 22:36:24 -05:00
Roman Briskine
ef7837410e
Fix non-root installations; update homepage (#15701) 2020-03-26 22:32:19 -05:00
Jennifer Herting
7b4354b4c3
genometools: added v1.6.1 (#15657) 2020-03-26 15:01:24 +01:00
Andrew Gaspar
a0c8686105
catch2: added versions up to v2.11.3 (#15680) 2020-03-26 12:46:39 +01:00
Toyohisa Kameyama
9e51ba80c7
ppOpen-Math/VIS: added new package (#15665) 2020-03-26 08:37:25 +01:00
darmac
9f5873324e
kmod: added package at v27 (#15633) 2020-03-26 07:50:28 +01:00
gauthier12
851fb173c8
med package: add version 4.0.0 (#15652) 2020-03-25 19:10:31 -07:00
iarspider
a2801a8deb
OpenJDK: add version 8u222 (#15677) 2020-03-25 19:00:39 -07:00
Carson Woods
9f256ed953
darshan-util and darshan-runtime: add version 3.1.8 (#15681) 2020-03-25 19:00:15 -07:00
Dan Bonachea
e042bd9d89
UPC++ 2020.3.0 update (#15623)
## Summary

This PR updates and improves the Spack package for [UPC++](https://upcxx.lbl.gov).
I'm an LBL employee and developer on the UPC++ team, as well as the maintainer of this Spack package.

### Key Improvements:
* Adding new 2020.3.0 release and support for use of develop/master branches
    - Our build infrastructure underwent a major change in this release, switching from a hand-rolled Python2 script to a bash-based autoconf work-alike. 
    - The new build system is NOT using autotools (nor does it support some of the more esoteric autoconf options), but the user interface for common builds is similar.
* Add explicit support for an MPI optional dependency
    - New `mpi` variant enables use of the MPI-based spawner (most relevant on loosely coupled clusters), and the (unofficial) mpi-conduit backend
    - This variant is OFF by default, since UPC++ works fine without MPI on many systems, increasing the likelihood first-time Spack users get a working build without needing to correctly setup MPI
* Add support for post-install testing using the test support deployed in the new build infrastructure
* Fix or workaround a few bugs observed during testing 

### Status

The new package has been validated with a variety of specs across over seven different systems, including: NERSC cori, ALCF Theta, OLCF Summit, an in-house Linux cluster, and macOS laptops (Mojave and Catalina).
2020-03-25 16:05:13 -07:00
Axel Huebl
9c0b197460
WarpX: MPI, Backends, Ascent (#15647)
Expose serial/parallel build (MPI), CUDA/OpenMP backends, Clang, and
Ascent bindings.

Interestingly, `warpx +ascent` currently leads to an infinite loop in
the Spack concretizer.
2020-03-25 14:54:13 -07:00
Axel Huebl
3aa225cd5c
openPMD-api: added v0.11.1 (#15659)
Add the latest release with HDF5-1.12 compatibility.
2020-03-25 11:57:00 +01:00
xfzhao
f1aec94719
mothur: specify version of vsearch (#15661) 2020-03-25 11:50:30 +01:00
Ben Morgan
2480217387
gitconddb: new package at v0.1.1 (#15651)
Git-based conditions database for HEP and other experiments.

Use latest release version and current master to support Linux and
macOS. Add core known dependencies and conflicts related to C++17
support.

cxxstd variant added to help transitive dependencies, and for future
support for newer standards in future.
2020-03-25 11:28:06 +01:00
Hadrien G
b8db87e1dc
ACTS: added v0.19 (#15671) 2020-03-25 10:49:53 +01:00
Sinan
24ca071652
pocl: add versions up to v1.4.0 (#15672)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-25 10:49:09 +01:00
Jeffrey Salmond
7e1e98cf8f
julia: added v1.4.0 (#15673) 2020-03-25 10:46:04 +01:00
darmac
16eb86acf2
libwebp: fix sha256 checksum (#15639) 2020-03-25 00:07:34 -07:00
Stephanie Brink
4e6c07529d
xz: add version 5.2.5 (#15656) 2020-03-24 23:05:26 -07:00
Matthias Diener
d099143999 charmpp: add version 6.10.1+cleanups
- change URL to http as our server only supports TLSv1.0, which
not all HTTPS clients accept anymore
- change name of development branch to 'master'
2020-03-24 23:04:41 -07:00
Carson Woods
25e50a9943
pmix: add version 2.2.3 (#15668) 2020-03-24 23:01:24 -07:00
Carson Woods
cfa8e69835
singularity: add version 3.5.3 (#15669) 2020-03-24 23:01:00 -07:00
eugeneswalker
862e13183d
workaround for otf2's erroneous python2 configure requirement (#15653) 2020-03-24 14:11:38 -07:00
Amjad Kotobi
3b7c79b225
r-remotes: added v2.1.1 (#15627) 2020-03-24 10:10:33 +01:00
Tomoki, Karatsu
dfe4e980ea
py-onnx: remove_dllexport_decl. (#15648) 2020-03-24 09:56:39 +01:00
Michael Kuhn
7e0ec0ec09 automake: Add 1.16.2 2020-03-23 18:52:02 -07:00
Andreas Baumbach
7b486fd84d py-ics: add version 0.7 2020-03-23 17:04:04 -07:00
Carson Woods
6a18bfbae8
CMake: add version 3.9.2 (#15644) 2020-03-23 17:03:25 -07:00
Carson Woods
e1f593b6c6
lmod: add version 7.8.1 (#15643) 2020-03-23 17:02:46 -07:00
Piotr Luszczek
d3c1a4c94b
xsdk-examples: add new package at version 0.1.0 (#15621)
* xsdk-examples: add new package at version 0.1.0
2020-03-23 00:10:15 -05:00
Adam J. Stewart
62787a7a3b
NCCL: add 1.2.2 (#15628) 2020-03-22 15:32:53 -05:00
Axel Huebl
a3e3413855
WarpX: Update ES and openPMD (#15611)
Update WarpX for recent developments:
- add openPMD I/O (default: ON)
- remove electro-static solver option (now a runtime option)
- enable tiny profiler by default
- depend on new CXX std support in make scripts for C++14
- WarpX only supports 2D and 3D in cartesian dims
2020-03-21 15:36:15 -07:00
Ben Morgan
bb4e9a7b32
davix: add cxxstd variant (#15593)
* davix: add cxxstd variant

Davix is written in C++, so add this variant to allow dependents to specify
this so a consistent ABI is used.

* davix: fix flake8 errors
2020-03-21 13:27:35 -05:00
Adam J. Stewart
983f9d3419
bash: add patches up to 5.0.16 (#15615) 2020-03-21 12:42:54 -05:00
Adam J. Stewart
7bde39d883
Fix bug in py-dgl installation, add unit tests (#15617) 2020-03-21 11:52:01 -05:00
darmac
4b771bc521
add new package: nfs-ganesha (#15580)
* add new pacakge: nfs-ganesha

* refine package.py

* update bison & flex as build depends
2020-03-21 10:42:08 -05:00
Adam J. Stewart
64737e0632
py-torchtext: add new package (#15604) 2020-03-20 16:01:18 -05:00
Matthias Maiterth
42db143587
freeipmi: Initial commit (#15576)
* freeipmi: Initial commit

Added freeipmi package. Configure and build work fine, install only as root,
thus added warning and added reference to issue #4432 .

* freeipmi: fixed change requests
2020-03-20 14:51:51 -05:00
Benjamin Fovet
74ba247839
Add gmsh v4.5.4 with new options (#15591)
* Add gmsh v4.5.4 with new options

This adds OpenCASCADE as an alternative to the oce package.
A new variant 'privateapi' is added to enable the gmsh private API.

* Make oce conflict with opencascade in gmsh
2020-03-20 14:51:30 -05:00
Benjamin Fovet
d3fafaa868
Add Ceres Solver v1.14.0 with new variants (#15597)
* Add Ceres Solver version 1.14.0

* Add variants for Ceres Solver
2020-03-20 14:51:01 -05:00
Carson Woods
c45644afaa
Add 33.2.1 version with checksum to lua-luaposix (#15600) 2020-03-20 14:50:07 -05:00
Adam J. Stewart
70577e4fd7
py-sentencepiece: add new package (#15601) 2020-03-20 14:42:54 -05:00
Dan Lipsa
9c45c44738
Add version 5.8 and fix sqlite+column_metadata mismatch. (#15450) 2020-03-20 15:26:41 -04:00
eugeneswalker
2f8ff722a9
tau: add dependency on hwloc (#15589) 2020-03-20 11:44:03 -07:00
Adam J. Stewart
3f4d300c84
sentencepiece: add new package (#15596) 2020-03-20 13:39:39 -05:00
Adam J. Stewart
6f3983b1c7
py-dgl: add new package (#15594) 2020-03-20 12:42:24 -05:00
Benjamin Fovet
e66a7530a1
Add NLopt version 2.6.1 (#15595) 2020-03-20 12:42:01 -05:00
Kevin Manalo
3b70c932aa
papi: add version 6.0.0 (#15590) 2020-03-20 10:08:54 -07:00
Dr. Christian Tacke
cf45d38d24
root: Add version 6.20.{00,02} (#15487)
* Add version 6.20.{00,02}, don't yet mark it preferred
* It needs zstd
* It needs numpy (at least for 6.20.00:6.20.03)
* Reorder python dependencies a bit

* Add mlp variant, default False
  Older versions always include mlp, so no conflicts there.
* Disable tmva, because it needs mlp
* tmva needs mlp, so add conflict
2020-03-20 16:55:48 +00:00
Matthieu Dorier
d14a6e6bc7
Added two new versions of spdlog (#15586) 2020-03-20 09:19:06 -05:00
darmac
5f63fc5316
add new package: glusterfs (#15565)
* add new package: glusterfs

* fix list_depth for url

* remove list_depth

* add list_url for glusterfs
2020-03-20 09:18:24 -05:00
darmac
6cccce4932
add new package lksctp-tools (#15564)
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-03-20 10:11:12 +01:00
Adam J. Stewart
03a88a2d3f
py-decorator: added v4.4.2 (#15581) 2020-03-20 10:10:19 +01:00
Adam J. Stewart
b4f1f42e4f
py-networkx: add 2.4 (#15582) 2020-03-20 10:09:48 +01:00
Adam J. Stewart
9a71a76461
py-tfdlpack: add new package (#15583) 2020-03-20 10:08:54 +01:00
Hadrien G
fdf363eaad
acts-core: added v0.18, updated boost dependency (#15584) 2020-03-20 10:06:45 +01:00
Andreas Baumbach
3f83d4d8f5
htop: add missing python build dependency (#15585) 2020-03-20 10:05:30 +01:00
Kevin Huck
625bf187d2
perfstubs: added new package (#15547) 2020-03-20 09:41:36 +01:00
Andrew Gaspar
e2cf6f5b1b
Improvements to Rust's Installation (#15395)
* Add sources and resources for each version of Rust

* install bootstrapping compiler into stage

* Add libgit2

* Install bootstrapping compiler correctly

* implement full rust bootstrap

* Remove support for Rust pre-1.14

Also add lots of comments

* Support only Rust 1.17 and newer

* Remove < 1.23 versions of Rust

* Change the layout of rust_releases for maintainability

* Remove LLVM variant

* Address flake8 issues

* Make libgit2 curl variant default False, conflict 0.28 and newer

* Remove binutils dependency

* Add ARM64 while we're at it

* flake8

* use the 'python' routine rather than relying on the correct python to be picked up
2020-03-19 22:57:41 -05:00
darmac
a89c5b36f0
add new package: bcache (#15563)
* add new package: bcache

* add depends: gettext for libintl
2020-03-19 22:57:04 -05:00
darmac
ce7cd7a5ab
add new package: libiscsi (#15579) 2020-03-19 22:35:59 -05:00
Nithin Senthil Kumar
b522296a5a
Update MVAPICH2 package for 2.3.3 release (#15578)
Co-authored-by: senthilkumar.16 <senthilkumar.16@nowlab.cse.ohio-state.edu>
2020-03-19 20:59:00 -05:00
Teodor Nikolov
a61c53a5c9
cosma: added package at v2.0.2 (#15497)
* [new package] COSMA

* Use virtual dependencies
2020-03-19 14:50:12 -05:00
Jordan Ogas
f9e58a52da
add charliecloud/0.14; remove umoci/skopeo; remove builder variant (#15573)
* add charliecloud/0.14; remove umoci/skopeo; remove builder variant

* fix typo

* add maintainer; add explicit config doc options; add py-requests as run dependency

* add autoconf build dependencies
2020-03-19 14:49:11 -05:00
Kai Germaschewski
b583b0e112
petsc fix hdf5 (#15572)
* petsc: add checksum for 3.12.4

* petsc: constrain hdf5 to <= 1.10.x

Current petsc will error when being build with hdf5 1.12, so this ensures that
a compatible hdf5 will be used. Fix suggested by @balay.
2020-03-19 11:42:19 -05:00
darmac
ef68d1f5df
add new package: ntirpc (#15561) 2020-03-19 11:22:03 -05:00
darmac
8142b2dc6b
add new package: yarn (#15562) 2020-03-19 11:21:37 -05:00
Yannik Stradmann
bfa72ed926
Add package: py-deprecated (#15571)
https://github.com/tantale/deprecated
2020-03-19 11:15:19 -05:00
Michael Kuhn
0b1b8c3936
openssl: added v1.1.1e and v1.0.2u (#15568) 2020-03-19 15:34:18 +01:00
darmac
363cf9f9b1
update attr version to 2.4.48 (#15535)
* update attr version to 2.4.48

* attr: remove redundant make() in install()
2020-03-19 09:24:35 -05:00