Commit graph

28625 commits

Author SHA1 Message Date
Manuela Kuhn
093a37750c
py-bidskit: new package and dcm2niix: add 1.0.20220720 (#34162)
* py-bidskit: new package and dcm2niix: add 1.0.20220720

* Remove list_url
2022-11-28 11:05:49 -07:00
iarspider
173cc7e973
Add checksum for py-traitlets 5.3.0 (#34127) 2022-11-28 11:05:35 -07:00
Greg Becker
451e3ff50b
warn about removal of deprecated format strings (#34101)
* warn about removal of deprecated format strings

Co-authored-by: becker33 <becker33@users.noreply.github.com>
2022-11-28 10:03:49 -08:00
Manuela Kuhn
523c4c2b63
py-dcm2bids: add new package (#34163) 2022-11-28 10:46:04 -07:00
Thomas-Ulrich
35e5a916bc
easi: update package, rework impalajit (#34032) 2022-11-28 15:54:21 +01:00
Annop Wongwathanarat
1374577659
acfl: provides blas, lapack, and fftw-api@3 (#34154) 2022-11-28 14:25:32 +01:00
Hector Martinez-Seara
4c017403db
texinfo: add v7.0 (#34150) 2022-11-28 06:22:13 -07:00
Massimiliano Culpo
fdfda72371
Use a module-like object to propagate changes in the MRO, when setting build env (#34059)
This fixes an issue introduced in #32340, which changed the semantics of the "module"
object passed to the "setup_dependent_package" callback.
2022-11-28 14:18:26 +01:00
Harmen Stoppels
efa1dba9e4
Revert "Revert "gitlab: Add shared PR mirror to places pipelines look for binaries. (#33746)" (#34087)" (#34153)
This reverts commit 63e4406514.
2022-11-28 06:06:03 -07:00
Annop Wongwathanarat
2a7ae2a700
armpl-gcc: add post-installation check by running examples (#34086) 2022-11-28 13:55:51 +01:00
Adam J. Stewart
a1b4e1bccd
Add type hints to Prefix class (#34135) 2022-11-28 13:49:57 +01:00
Alec Scott
066ec31604
Add restic v0.14.0 (#34148) 2022-11-28 08:39:37 +01:00
Alec Scott
bb1888dbd4
direnv: add v2.32.2 (#34147) 2022-11-27 22:09:53 +01:00
Michael Kuhn
bc17b6cefb
rust: add 1.65.0 (#34124) 2022-11-27 16:03:46 +01:00
Umashankar Sivakumar
46a0cd8e55
SingularityCE: Add conmon+squashfs as dependencies (#33891) 2022-11-27 13:05:49 +01:00
fpruvost
b2ceb23165
pastix: add new version 6.2.2 (#34066) 2022-11-27 00:33:05 +01:00
Harmen Stoppels
2fad966139
neovim: fix deptypes (#34060) 2022-11-27 00:23:24 +01:00
Luke Diorio-Toth
0b01c8c950
py-fastpath: new package (#34142)
* py-fastpath: new package

* Update var/spack/repos/builtin/packages/py-fastpath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-26 15:57:45 -07:00
Eric Berquist
613d0b7e8e
emacs: add variant treesitter for Emacs 29+ (#34134) 2022-11-26 23:45:00 +01:00
Wouter Deconinck
21c29ee375
prmon: Add missing depends_on py-numpy, py-pandas when +plot (#34123) 2022-11-26 23:43:25 +01:00
Luke Diorio-Toth
e236339e5a
aragorn: add newer versions and URL (#34140) 2022-11-26 23:34:59 +01:00
Luke Diorio-Toth
7a03525c35
minced: add v0.4.2 (#34141) 2022-11-26 23:30:56 +01:00
Hans Fangohr
17ca86a309
Octopus: branch for Octopus development is now "main" (#34128)
Historically, development of the Octopus code was done on the "develop" branch
on https://gitlab.com/octopus-code/octopus but now development takes place on
"main" (since Q3 2022).

The suggestion in this PR to solve the issue is to keep the spack label
`octopus@develop` as this better indicates this is the development branch on git
than `octopus@main`, but of course to use the `main` branch (there is no choice
here - the `develop` branch is not touched anymore). Sticking to
`octopus@develop` as the version label also keeps backwards compatibility.
2022-11-26 15:29:49 -07:00
marcost2
ce71a38703
nvtop: Add 2.0.3, 2.0.4, 3.0.0 and 3.0.1 (#34145)
* And add the option to compile support for Intel GPU's
2022-11-26 21:04:48 +01:00
Satish Balay
12c23f2724
Revert "url_exists related improvements (#34095)" (#34144)
This reverts commit d06fd26c9a.

The problem is that Bitbucket's API forwards download requests to an S3 bucket using a temporary URL. This URL includes a signature for the request, which embeds the HTTP verb. That means only GET requests are allowed, and HEAD requests would fail verification, leading to 403 erros. The same is observed when using `curl -LI ...`
2022-11-26 17:56:36 +00:00
Carlos Bederián
b8ae0fbbf4
amdblis: symlink libblis-mt to libblis (#32819) 2022-11-26 00:33:29 +01:00
Sebastian Ehlert
6b5c86e0be
toml-f: add 0.2.4 and 0.3.1 (#34025) 2022-11-25 16:29:58 -07:00
Victoria Cherkas
1ed1b49c9b
metkit, fdb: Add latest versions (#33289) 2022-11-25 23:54:51 +01:00
petertea
4265d5e111
Update TotalView versions and website (#33418)
Co-authored-by: Peter Thompson <thompson81@llnl.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-11-25 23:42:56 +01:00
snehring
8c0fb91d4e
ffmpeg: adding version 5.1.2 (#33758)
* ffmpeg: add version 5.1.2 and switch to conditional variants

Also: py-torchvision: restrict ffmpeg dependency
2022-11-25 23:37:17 +01:00
Thomas Madlener
567532b9e5
lcio: Add new version and restrictions on c++ standard (#33997) 2022-11-25 23:08:23 +01:00
Adam J. Stewart
47d59e571e
py-pandas: add v1.5.2 (#34091) 2022-11-25 23:03:16 +01:00
Adam J. Stewart
93ff19c9b7
py-pytorch-lightning: add v1.8.3 (#34096) 2022-11-25 22:59:39 +01:00
Harmen Stoppels
2167cbf72c
Track locks by (dev, ino); close file handlers between tests (#34122) 2022-11-25 10:57:33 +01:00
Sergey Kosukhin
7a5e527cab
zlib: fix shared libraries when '%nvhpc' (#34039) 2022-11-24 20:10:18 +01:00
iarspider
a25868594c
Add checksum for py-uncertainties 3.1.7 (#34116) 2022-11-24 12:11:58 -06:00
Brent Huisman
dd5263694b
Arbor: Yank v0.5 (#34094)
v0.5 does not build due to a change in setting `arch` introduced in v0.5.2, compatibility with which was not kept in `arbor/package.py`. Since v0.5.2 is compatible with `arbor/package.py`, and is API compatible with v0.5, any users relying on v0.5 can rely on v0.5.2.
2022-11-24 11:19:32 +01:00
Thomas-Ulrich
5fca1c9aff
hipsycl: add v0.9.3 (#34052) 2022-11-23 23:14:01 -07:00
Tim Haines
1d7393c281
dyninst: add checksums for all supported versions (#34051) 2022-11-24 03:45:56 +01:00
Jen Herting
f0bc551718
New package: py-kt-legacy (#34104)
* first build of keras-tuner with dataset kt-legacy

* [py-kt-legacy] fixed homepage

* [py-kt-legacy] depends on setuptools

* [py-kt-legacy] fixed import

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: Sid Pendelberry <sid@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-11-23 19:26:21 -07:00
Adam J. Stewart
46b9a09843
py-cartopy: older versions don't support newer matplotlib (#34109) 2022-11-24 02:44:20 +01:00
Stephen Sachs
c0898565b9
openfoam: Fix openfoam@2012_220610 %intel (add #include <array>) (#34088) 2022-11-24 02:34:40 +01:00
Benjamin Meyers
3018e7f63d
Add py-urwid@2.1.2 (#34103)
* Add py-urwid@2.1.2

* [@spackbot] updating style on behalf of meyersbs
2022-11-23 19:25:02 -06:00
Satish Balay
dfa1a42420
petsc, slepc: enable parallel builds (#34024) 2022-11-24 02:16:20 +01:00
Adam J. Stewart
2c8ab85e6a
gnuplot: fix build with Apple Clang (#34092) 2022-11-24 01:33:33 +01:00
Nicolas Cornu
b2505aed5c
HighFive: bump to 2.6.2 (#34090) 2022-11-24 00:20:36 +01:00
Valentin Volkl
7847d4332e
docs: update info on XCode requirements (#34097) 2022-11-24 00:20:09 +01:00
Massimiliano Culpo
70bcbba5eb
ecflow: polish recipe (#34043) 2022-11-23 21:38:37 +01:00
Tom Scogland
0182603609
Control Werror by converting to Wno-error (#30882)
Using `-Werror` is good practice for development and testing, but causes us a great
deal of heartburn supporting multiple compiler versions, especially as newer compiler
versions add warnings for released packages.  This PR adds support for suppressing
`-Werror` through spack's compiler wrappers.  There are currently three modes for
the `flags:keep_werror` setting:

* `none`: (default) cancel all `-Werror`, `-Werror=*` and `-Werror-*` flags by
  converting them to `-Wno-error[=]*` flags
* `specific`: preserve explicitly selected warnings as errors, such as
  `-Werror=format-truncation`, but reverse the blanket `-Werror`
* `all`: keeps all `-Werror` flags

These can be set globally in config.yaml, through the config command-line flags, or
overridden by a particular package (some packages use Werror as a proxy for determining
support for other compiler features).  We chose to use this approach because:

1. removing `-Werror` flags entirely broke *many* build systems, especially autoconf
   based ones, because of things like checking `-Werror=feature` and making the
   assumption that if that did not error other flags related to that feature would also work
2. Attempting to preserve `-Werror` in some phases but not others caused similar issues
3. The per-package setting came about because some packages, even with all these
   protections, still use `-Werror` unsafely.  Currently there are roughly 3 such packages
   known.
2022-11-23 12:29:17 -08:00
Jen Herting
bf1b846f26
[py-antlr4-python3-runtime] Added versions 4.9.3 and 4.10 (#34102)
* Working updates to py-antlr4-python3-runtime and py-omegaconf

* [py-antlr4-python3-runtime] added version 4.9.3

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: Benjamin Meyers <bsmits@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-11-23 12:30:11 -07:00