Commit graph

10497 commits

Author SHA1 Message Date
Brian Van Essen
57ad02ad43
Added a package for the DiHydrogen distributed linear algebra library. (#15426)
* Added a package for the DiHydrogen distributed linear algebra library.

* Updated recipe to provide cuda architecture constaints.

* Addressed reviewer comments

* Fixed flake 8
2020-03-18 11:46:49 -05:00
Nichols A. Romero
e59b506506
QMCPACK Update March 2020 (#15511)
* Clean-up description of variants.

* Support AFQMC with CUDA.
2020-03-18 11:21:48 -05:00
Axel Huebl
958f26073e
openPMD-api: HDF5 1.12.0 Support (#15530)
Fix API breakage in HDF5 1.12.0 for released versions.
2020-03-18 06:47:01 -07:00
Jim Galarowicz
586609102b
Previous qt package file changes broke the openspeedshop gui build. (#15471)
* Previous qt changes broke the openspeedshop gui build.  This puts back the changes that caused the breakage.

* Update the qt version to be more robust.

Co-authored-by: Galarowicz, James <jgalarowicz@newmexicoconsortium.org>
2020-03-18 14:45:17 +01:00
eugeneswalker
847d5d3459
update checksum for intel-tbb@2020.1 (#15528) 2020-03-17 18:45:56 -07:00
Greg Sjaardema
787f89b7db
SEACAS: Add versions 2020-03-16 and 2020-01-16 (#15525) 2020-03-17 18:02:31 -07:00
Sergey Kosukhin
06bf93b270
MPICH: optional libxml2 support; NAG patches (#15235)
* Add patches when building with NAG
* Make libxml2 support optional. Also include conflict for
  @:3.2~hydra+libxml2 since @:3.2~hydra does not require libxml2
  support
* Add '--disable-silent-rules' to get more verbose output during
  the build
2020-03-17 11:41:47 -07:00
wspear
304f0e9ef1
Corrected compiler filtering for TAU makefiles (#15342)
* Implemented working file filtering to replace spack compiler wrapper with real compiler.

* Using string=True instead of re.escape. Using self.prefix.lib instead of appending /lib.

Co-authored-by: Wyatt Spear <wspear@cs.uoregon.edu>
2020-03-17 08:38:53 -07:00
Tomoki, Karatsu
c2e0ee6383
geant4: Removed unnecessary definition of xerces-c. (#15513) 2020-03-17 10:31:31 +00:00
Seth R. Johnson
05d0c7b477
Update and exetend VecGeom (#14520)
* Add new vecgeom versions, add cuda support, automate target options

* Add ROOT, GDML, and external VecCore support to VecGeom

* Address reviewer comments

* Update vecgeom for CUDA

* Update versions
2020-03-17 10:18:40 +00:00
darmac
402d89afa2
nfs-utils: added package at v2.4.2 (#15491) 2020-03-17 08:49:35 +01:00
eugeneswalker
c92847a30c
cap binutils version @:2.33.1 due to build failures with 2.34 (#15504) 2020-03-16 17:47:24 -07:00
Seth R. Johnson
c9a715b190
veccore: added package at v0.6.0 (#15472) 2020-03-16 20:55:16 +01:00
Seth R. Johnson
a8706cc89b
CMakePackage: convert variants to CMake arguments (#14376)
Add a 'define_from_variant` helper function to CMake-based Spack
packages to convert package variants into CMake arguments. For
example:

  args.append('-DFOO=%s' % ('ON' if '+foo' in self.spec else 'OFF'))

can be replaced with:

  args.append(self.define_from_variant('foo'))

The following conversions are handled automatically:

* Flag variants will be converted to CMake booleans
* Multivalued variants will be converted to semicolon-separated strings
* Other variant values are converted to CMake string arguments

This also adds a 'define' helper method to convert any variable to
a CMake argument. It has the same conversion rules as
'define_from_variant' (but operates directly on values rather than
requiring the user to supply the name of a package variant).
2020-03-16 11:41:19 -07:00
Erik Schnetter
55d5adfecf
silo: depends on hdf5@:1.10.999 (#15495)
Silo does not build with HDF5 1.12.
2020-03-16 19:10:06 +01:00
Melven Roehrig-Zoellner
0301ec32b4
tixi: added package at v3.0.3 (#15490) 2020-03-16 09:02:10 +01:00
Erik Schnetter
77e845d53c
swig: added v4.0.1 (#15496) 2020-03-16 08:45:25 +01:00
Erik Schnetter
1e547f58ab
ncurses: added v6.2 (#15494) 2020-03-16 08:43:21 +01:00
Erik Schnetter
410ad0b158
cmake: added v3.16.5 (#15492) 2020-03-16 08:42:49 +01:00
Matthieu Dorier
d24c64c936
unqlite: added package at v1.1.9 (#15501) 2020-03-16 08:33:42 +01:00
Erik Schnetter
96a037adf7
gcc: Don't apply macOS 9.2.0 patch for 9.3.0 (#15493)
The patch neither applies nor is necessary.
2020-03-15 15:43:23 -07:00
Tim Haines
471f23e456
Limit binutils to <= 2.33.1 (#15470)
HPCToolKit <= 2020.03.01 does not build with binutils 2.34.
2020-03-14 07:45:00 -05:00
Hans Pabst
38d04e29eb
LIBXSMM 1.15 (#15482)
* LIBXSMM 1.15

* LIBXSMM: renamed development version according to the related branch on GitHub.
2020-03-13 14:44:26 -05:00
Adam J. Stewart
262a69c0a9
py-astpretty: add new package (#15484)
* py-astpretty: add new package

* pkg_resources needed at run-time
2020-03-13 14:40:58 -05:00
Michael Kuhn
14441e00dc
package: Add fetch_options variable (#15317)
PR #15212 added a new connect_timeout option that can be overridden
using fetch_options but had to specified per-version. This adds a new
per-package variable that can be used to override fetch_options for
all versions in the package. This includes connect_timeout as well
as 'cookie' (e.g. for the jdk package).

Packages can combine package-level fetch_options with per-version
fetch_options, in which case the version fetch_options completely
override the package-level fetch_options.

This commit includes tests for the added behavior.
2020-03-13 11:41:19 -07:00
Melven Roehrig-Zoellner
7b00712fff
pgi: add missing paths in setup_run_environment (#15480) 2020-03-13 13:07:35 -05:00
Thomas Kluyver
27bd4a5cdd
Add py-h5glance versions 0.5 & 0.6 (#15461)
* Add py-h5glance versions 0.5 & 0.6

* List versions newest to oldest
2020-03-13 08:05:31 -05:00
Hadrien G
a3c319979b
Add new ACTS version (#15479) 2020-03-13 12:57:32 +00:00
Hector
7ddd84ac14
Add source highlight package (#15473)
* add GNU source-highlight package

* fix flake8

* Allows the package to download from GNU mirrors
2020-03-12 19:26:45 -05:00
Michael Kuhn
9806149145
gcc: Add 9.3.0 (#15469) 2020-03-12 16:10:21 -05:00
noguchi-k
fddca6312c
cpprestsdk: fix common error and, use boost@1.69.0 or lower (#15463) 2020-03-12 16:09:07 -05:00
David Böhme
b8064df495
Add Caliper v2.3.0 (#15468) 2020-03-12 13:37:15 -05:00
Amjad Kotobi
ed5b10d11f
Add package jblob-3.0 (#15400) 2020-03-12 13:35:30 -05:00
Joe Koning
d87f09cc5e
Change py-merlinwf to py-merlin (#15453)
* Change py-merlinwf to py-merlin to match PyPi.
Change py-merlin to py-merlin-info.

Move to py-merlin_info.

Add py-merlin-info back in.

* Update dependent packages for the new merlin name.

* Remove non-working pyre and the associated packages, exchanger,
py-pythia and py-mlerin-info from citcoms.

* Remove blank line.
2020-03-12 13:27:02 -05:00
Bryce Allen
6887cb3da4
pfunit: add max_array_rank=(int) variant (#15348)
* pfunit: add max_array_rank=(int) variant

* pfunit: flake8 line length fixes
2020-03-12 10:58:18 -06:00
Zhiyi Wu
d95766756c
Update plumed 2.5.4 and 2.6.0 (#15462)
Co-authored-by: zhiyiwu <zhiyi.wu@gtc.ox.ac.uk>
2020-03-12 10:47:26 -06:00
Thomas Gruber
e916a9424c
likwid: add compiler selection for ARM and POWER architecture (#14183)
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-03-12 14:44:43 +01:00
Jeffrey Salmond
ad1a28ee48
plumed: add cython as dependency (#15460) 2020-03-12 12:01:52 +01:00
darmac
f4a5eb2b6d
add new package: lmbench (#15457)
* add new package: lmbench

* refine LDFLAGS append call
2020-03-11 22:49:22 -05:00
Nick Booher
8bdbd96e68
revbayes: Update URLs and hashes for old archives (#15451)
* revbayes: Update URLs and hashes for old archives

* Switch to url_for_version

* Fix whitespace
2020-03-11 22:04:59 -05:00
Les Kurz
99e465663a
Update package.py for HDF5 1.12.0 release (#15430)
* Update package.py

* Update package.py

* add upper bounds to production config_option

* fix config_options

* Fix mistaken changes.
2020-03-11 20:08:49 -05:00
darmac
77434c24a8
add new package: php (#15435) 2020-03-11 19:36:23 -05:00
Daryl W. Grunau
3e8f873b03
cpio: icc -no-gcc (#15446)
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-03-11 19:35:10 -05:00
Michael Kuhn
e01817cb15
binutils: Add missing texinfo dependency (#15444) 2020-03-11 19:34:24 -05:00
darmac
a9a59ea3b4
add new package: keyutils (#15433) 2020-03-11 19:29:31 -05:00
Stephanie Brink
6af8e19b2d
add hatchet python package (#15428) 2020-03-11 19:23:32 -05:00
Dr. Christian Tacke
12940f3448
libfabric@1.9.1: Add fabtests (#15440)
The test utils for the new version 1.9.1 are missing.
Add them.
2020-03-11 14:51:35 -05:00
Anthony Scemama
83584afa35
Package for the resultsFile Python module (#15088)
* Added resultsFile package

* Added comments

* Fixed PEP8

* Added Python3 package

* Removed py-setuptools
2020-03-11 14:44:36 -05:00
rvinaybharadwaj
87e69eed1c
Horovod (#15380) 2020-03-11 12:00:02 -06:00
Neil Flood
9b114c486f
kealib: moved to github, added v1.4.12 (#15436) 2020-03-11 11:06:18 +01:00