* Spec.satisfies accesses Spec.concrete as property
Fixes#2760
When copying a spec, _concrete is always set to False for each
dependency. "Spec.satisfies" was accessing the member "_concrete"
directly instead of using the property "concrete". This means that
if you copy a spec, the dependencies will be considered equal, but
did not necessarily satisfy one another. Spec.satisfies is a
prerequisite for a package to be considered an extension; as a
consequence, an extension with run-time dependencies that were also
extensions did not activate those extensions. This updates
Spec.satisfies to avoid checking the cached member "_concrete"
directly.
* Added test to check for activation of dependency extension
* Added test to check for transitive satisfiability between a spec and its copy
* Update libquo's homepage, url, and description.
Recently LANL moved to lanl (from losalamos).
* Fix formatting.
Conform to style guidelines.
* More style updates.
Doesn't appear to be necessary, but for good measure.
* oce: fix fetching
apparently the fetcher is confused when there is a mixture of 3-digits
versions and 2-digits versions, i.e. 0.18 and 0.17.2
* flake8
* Updating udunits.
Udunits 2.2.21 is no longer on the unidata ftp site.
The latest is 2.2.23, adding that and it's md5sum.
* Updating udunits2 download URL.
The Unidata ftp site does not keep previous versions of udunits.
However all the tagged versions are in their github.com repository.
Updating the URL to use github.
* Updating udunits2 with a autoreconf def.
The udunits packages on github do not contain a configure script.
One has to run autoreconf to generate it, so adding that to
package file.
Also updated to the latest version and all md5 checksums.
* PackageMeta: `run_before` is an alias of `precondition`, `run_after` an alias of `sanity_check`
* PackageMeta: removed `precondition` and `sanity_check`
* PackageMeta: decorators are now free-standing
* package: modified/added docstrings. Fixed the semantics of `on_package_attributes`.
* package: added unit test assertion as side effects of install
* build_systems: factored build-time test running into base class
* r: updated decorators in package.py
* docs: updated decorator names
* Add dependency on perl
The build process uses perl and also needs `Test::More`.
Some distros, e.g. CentOS, break the core Perl distribution
into separate packages, so it's possible to "have perl" but
not have all the bits one needs to build OpenSSL.
We'll just install one of ours, which comes with all of its
factory parts included.
* Remove uninformative comment
> # Also requires make
doesn't really add any value...
* Fix configure's zlib version check
R wants a version of zlib that is 1.2.5 or newer.
The version checking code just does a lexicographic comparison
of the first 5 characters of the string, so it seesthat the latest
zlib version, 1.2.10, as 1.2.1 and fails.
This patch changes the comparison to use zlibs' hex ZLIB_VERNUM
so that it does not suffer from this problem.
A version of this patch is wending it's way through the R comunity
community and will/should be included in a future release.
I tested the patch with the current R, 3.3.1.
* Tighten zlib dependency version (>= 1.2.5)
* Convert patch to level=1 format.
* libmonitor does not exist at
http://libmonitor.googlecode.com/svn/trunk/
Change location to HPCToolkit version at github. Specify the hash corresponding
to the 20130218 version.
* When xcb is version 1.11, patch the configure file so it doesn't trip on
pthread-stubs and xau.
* Add os.getcwd()/lib to LD_LIBRARY_PATH, instead of nuking
existing LD_LIBRARY_PATH.
* cfitsio: Allow building as shared libraries
- Allow building as shared libraries
- Also add optional bzip2 variant
- Also update to newest version
This requires the recent correction to “fix_darwin_install_name”.
* cfitsio: Simplify code, default to +shared
* Adding 'self.' to the spec call for configure_args
* Updating this to set spec to self.spec
* More updates to the configure_args spec calls
* Another spec issue
* Another spec issue.
* And another spec issue
* Switching cmor back to self.spec.
- Add a PythonPackage class with build system support.
- Support build phases in PythonPackage
- Add a custom sanity check for PythonPackages
- Get rid of nolink dependencies in python packages
- Update spack create to use new PythonPackage class
- Port most of Python packages to new PythonPackage class
- Conducted a massive install and activate of Python packages.
- Fixed bugs introduced by install and activate.
- Update API docs on PythonPackage
* Set MPI[lang] env var to compiler wrappers on cray
Sets MPICC, MPICXX, MPIFC etc to point to the compiler wrappers on Cray systems.
Some packages look for MPIs via environment variables - e.g adios
* Use spec to check for Cray
* os is no longer used.
* petsc: add 64bit variant
* hypre: add int64 variant
* superlu-dist: add int64 variant
* petsc: add int64 variant
* metis: rename idx64 to int64 to make it consistent with other packages
* mumps: rename idx64 to int64 to make it consistent with other packages
* dealii: rename 64bit to int64 to make it consistent with other packages
added latest version of isl. Needed to get llvm/clang in the latest
trunk to build via spack, but there are more versions available.
what is the policy regarding those? Add what we need for now?
* Updating BoxLib with the ability to build again.
* Using Spack MPI compilers directly.
* Fixing typo.
* Using tarball from github archive for boxlib.
* Added customization for make targets in 'build' and 'install' phases for CMakePackage
* Use rst in build system docs so that Sphinx generates nice API docs
* Allow AutotoolsPackages to be built in a different directory
* Flake8
* Fix missing import
* Allow configure to be located in different directory
* Update espressopp to use build targets
* Flake8
* Sphinx fix, lists must be a new paragraph
* Back out change that allowed a configure script in a different directory than build_directory
* Add missing deps, build in parallel
* Missing space for rst list
Although it hurts a little, officially pre-compiled headers in
boost are only supported for gcc & msvc and the latest clang
releases still fail to build boost with it.
Therefore, I disabled building those to get boost build with
clang 3.9.0 on an Ubuntu 14.04 (x86).
Links to documentation and boost bug reports are inline, so
people can later on check if they still apply. Seems just to
be a bug in `Boost.Build` that tries to set `-o` with multiple
output files.
* Added support for Octopus 6.0 and the optional libraries: metis, parmetis, netcdf, arpack-ng, and scalapack.
* Fix PEP 8 line too long error.
* Changed format syntax {} to {0} to support Python 2.6.
* Adding the py-ipdb package for more stable debugging with iPython.
* Removing deprecated python support, adding missing dependencies.
* Adding version checks for (i)python
* Update the krell institute products to use the latest features of spack for building on cluster platforms.
* Address travis error messages and resubmit the pull request.
* Update the contents of openspeedshop package.py so it passes the flake8 tests.
* Fix flake8 error-whitespack issue in mrnet package.py file.
* Add updates based on spack reviewer feedback.
* More fixes based on comments from reviewers. Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH.
* More review related changes. Update MPIOption.append lines and take out xercesc references.
* Create a base options function for common openspeedshop base cmake options to reduce redundencies.
* Add libxml2+python depends on to get around issues with the libxml2 package file.
* Using boost over 1.60.0 causes compile errors. This is a known boost bug. Also, dyninst-9.2.0 is set to be the vesrion of dyninst to use with OSS, as of now. The newer version fails to build.
* Fix bad syntax in specifying the boost version range.
* Update the version numbers for the krell institute components and tools: cbtf and openspeedshop.
* Do not build glib for qt3, it is not needed and causes build problems at this time anyway.
* Removing the nobuild, nolink, and alldeps dependency types in favor of being explicit.
* This will help with maintenance going forward, as adding more dependency types won't affect existing declared dependencies in weird ways.
* default deptype is still `('build', 'link')`
* Remove +mpi variant from NCO
* Update NCO deps to AutotoolsPackage
* Update the other NetCDF packages to AutotoolsPackage
* ANTLR has a nolink deptype on java, don't worry about csharp
* Remove restrictions from NCO package, fix homepage
* Add version 4.6.3 of NCO
* Missed AutotoolsPackage for NetCDF-CXX4
* NetCDF tests fail when run in parallel
* Remove commented out dependency
* Add documentation dependency
* espressopp: package for the ESPResSo++ software
This commit adds a package for the ESPResSo++
simulation software.
* Move Espressopp package to CMakePackage
This commit moves Espressopp package to CMakePackage.
Addresses some comments in the PR.
* Remove run_tests and changed type of dependencies
Addressed some comments from @adamjstewart.
Removed global run_tests setting and removed type from many
dependencies. Set type for py-mpi4py to 'nolink'.
* Updated to last version and fix mpi4py dependency
Added latest espressopp version and changed mpi4py (version) dependency for
different espressopp versions.
* Changed mpi4py version requirements for espressopp
Changed py-mpi4py version requirements for espressopp@1.9.4 according
to the package build requirements for that version.
Adds the following packages:
node-js py-backports-abc py-functools32 py-pycurl py-vcversione
npm py-certifi py-jsonschema py-tornado py-zmq
- Added python packages that are dependencies for the Jupyter suite
- Update new python packaages to use extension package install function.
- Added npm and node-js packages
* Rename packages
* Upcasing depends_on() in packages.
* Downcased extends('r')
* Fixed erroneously changed URL that had slipped through.
* Fixed typo
* Fixed link from documentation into package source code.
* Fixed another doc problem.
* Changed underscores to dashes in package names.
* Added test to enforce lowercase, no-underscore naming convention.
* Fix r-xgboost
* Downcase more instances of 'R' in package auto-creation.
* Fix test.
* Converted unit test packages to use dashes not underscores
* Downcase `r` in the docs.
* Update module_file_support.rst
Fix r->R for class R.
* Use zlib's "fossil" site for old tarballs
Following citibeth's suggestion in #2732, use zlib's "fossil"
site (not to be confused with the sqlite team's VCS...) for retrieving
old tarballs.
Digests for 1.2.{8,10} match and both install for me on CentOS 7.
* Use zlib's "fossil" URL as the one true URL
Everything seems to be available at zlib's "fossil" URL, so just use
it as the one and only url.
(and fix a flake8 complaint about a comment)
* add package for conduit
* try to fix main conduit docstring
* use join_path instead of pjoin
* address a few requests in pr #2670
change name of 'github-master' to 'master'
change 'docs' variant to 'doc', set default to False
remove explicit +shared variant spec for silo and hdf5 deps
(in the conduit +shared case) cases since they default to True
add reference to static rpath issue
(https://github.com/LLNL/spack/issues/2658)
* address pr #2670 requests
add todos and more info on why variants for deps where selected
use python module install python to enable spack activate
use .format instead of %s
* zlib@1.2.10 and R do not get along, work around it
R's configure script has trouble with version numbers > 1.2.9.
This works around it by constraining R to 1.2.8.
I'm working with some R folk on getting it fixed going forward.
* Add adamjstewart's change.
* Update to latest zlib version, server no longer provides older version
Funded-by: IDEAS
Project: IDEAS/xSDK
* Add alternative URL for previous release of zlib
