Commit graph

14766 commits

Author SHA1 Message Date
iarspider
802ac63991
MCUtils: migration to gitlab (#21771) 2021-02-19 11:35:27 +01:00
Filippo Spiga
eff59ba9d6
nvhpc: add v21.2 (#21796) 2021-02-19 10:31:09 +00:00
holrock
e1c5952130
ruby: remove unwanted dependencies (#21797)
ruby/tk is removed from stdlib at ruby2.4.0
2021-02-19 10:28:22 +00:00
iarspider
554e736a14
gperftools: add v2.8.1 (#21794) 2021-02-19 11:09:46 +01:00
iarspider
14897df02b
davix: add v0.7.6 (#21773) 2021-02-19 09:37:56 +01:00
Brian Van Essen
23e22ae623
Updates to the LBANN software stack (#21733)
Set the minimun C++ standard for LBANN, Hydrogen, and DiHydrogen to
C++17.  The minumim C++ standard for Aluminum is C++14.  Add new
versions for Aluminum, Hydrogen, and DiHydrogen.  Added support for
high performance linkers in LBANN recipe (gold and lld).  Added
variants to LBANN for enabling embedded Python support independently
from the Python front end.
2021-02-19 09:32:17 +01:00
h-denpo
e772291df1
blast2go: conflicts for platforms other than x86_64 (#21693) 2021-02-19 08:29:33 +00:00
Tomoyasu Nojiri
310e82c863
hdf-eos5: fix hdf5 dependency (#21789) 2021-02-19 09:16:13 +01:00
darmac
901aefc6a5
librelp: add test dependency on valgrind (#21752) 2021-02-19 07:47:50 +01:00
darmac
43cf529594
py-sip: change url because some old package is missing (#21402) 2021-02-18 19:52:00 -06:00
emai-imcs
70b81dc48d
py-fenics-instant: new package for legacy fenics 2016 and 2017 versions (#21775)
* py-fenics-instant: new package for legacy fenics 2016 and 2017 versions

* Update var/spack/repos/builtin/packages/py-fenics-instant/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-02-18 23:02:39 +00:00
Massimiliano Culpo
f2e3edf6db
Testing: use spack.store.use_store everywhere (#21656)
Keep spack.store.store and spack.store.db consistent in unit tests

* Remove calls to monkeypatch for spack.store.store and spack.store.db:
  tests that used these called one or the other, which lead to
  inconsistencies (the tests passed regardless but were fragile as a
  result)
* Fixtures making use of monkeypatch with mock_store now use the
  updated use_store function, which sets store.store and store.db
  consistently
* subprocess_context.TestState now transfers the serializes and
  restores spack.store.store (without the monkeypatch changes this
  would have created inconsistencies)
2021-02-18 13:22:49 -08:00
Satish Balay
cbcf8d208b
xsdk: fix @develop build (#21749)
- petsc4py: update @develop build from petsc repo
- omega-h: develop branch is now main branch
2021-02-18 14:41:36 -06:00
Seth R. Johnson
2d917e17d9
flibcpp: Activate SWIG rebuild when +swig (#21767)
This option allows downstream packages to build with SWIG and the flibcpp-exported SWIG interfaces.
2021-02-18 19:12:18 +00:00
Gregory Lee
3364e5550f
patches to apply to gdbm and m4 when using oneapi compiler (#21740) 2021-02-18 09:39:20 -08:00
Sebastian Schmitt
8e3ac8577f
Arbor: rely on spack's compiler wrapper to set architecture (#21758) 2021-02-18 15:02:09 +00:00
ketsubouchi
432625ca26
openrasmol: new package (#21530) 2021-02-18 13:09:38 +01:00
Freifrau von Bleifrei
ed1540efa3
sgpp: use spack compiler instead of default gcc (#21756)
Co-authored-by: Theresa Pollinger <pollinta@ipvs.uni-stuttgart.de>
2021-02-18 11:28:42 +00:00
Mikael Simberg
651c6ea350
hpx: add v1.6.0 (#21757) 2021-02-18 10:42:19 +00:00
Sergey Kosukhin
3273529936
eccodes: add v2.20.0 (#21703) 2021-02-18 11:20:53 +01:00
Tomoyasu Nojiri
93d9bed192
enzo: fix for aarch64 (#21715) 2021-02-18 11:14:18 +01:00
Xavier Delaruelle
54ee955b76
tcl: add v8.6.11 (#21678) 2021-02-18 11:04:38 +01:00
h-denpo
20fd4e35de
dlib: fix dependency on opencv (#21718)
Since a variant (imgcodecs,default=False) has been added to opencv,
+imgcodecs is now required in dlib's opencv dependency.
2021-02-18 11:02:24 +01:00
m-shunji
9771903533
quantum-espresso: fix ldflags for scalapack (#21719) 2021-02-18 11:00:19 +01:00
Harmen Stoppels
1e16fcfd91
cmake: add v3.18.6, v3.19.5 (#21725) 2021-02-18 10:53:05 +01:00
Michael Kuhn
fd85f79e18
osu-micro-benchmarks: add v5.7 (#21729) 2021-02-18 10:48:41 +01:00
Erik Schnetter
7fe131e444
nsimd: add v2.2 (#21743) 2021-02-18 10:33:09 +01:00
holrock
5f6d77f4c4
ruby: add v2.7.2, v3.0.0 (#21745) 2021-02-18 10:17:41 +01:00
Desmond Orton
94e2eee778
sratoolkit: add v2.10.9 (#21746) 2021-02-18 10:17:12 +01:00
darmac
76304595d5
ctpl: add dependency on gettext (#21747) 2021-02-18 10:07:38 +01:00
Adam J. Stewart
7ac156fb12
py-scipy: add v1.6.1 (#21748) 2021-02-18 10:06:44 +01:00
darmac
598f0c89fd
vcsh: add bin as a directory (#21750) 2021-02-18 10:06:03 +01:00
ketsubouchi
b3e5df1049
cbflib: new package (#21531) 2021-02-18 10:05:32 +01:00
darmac
de68646c6e
openfst: fix conflicts version for gcc (#21753) 2021-02-18 10:01:43 +01:00
emai-imcs
acc7169fdc
py-fenics-ufl: inclusion of version 2016.2.0 (#21738)
* fix to pre 2019.1.0 version and support for 2016.1.0 added

* added 2016.2.0 version for retro dolfin support
2021-02-17 21:44:48 -06:00
emai-imcs
0082750f86
fix to compiliation error with fenics in pre 2019 versions and support for 2016.2.0 version of fiat added (#21708) 2021-02-17 21:44:12 -06:00
emai-imcs
827262df89
update to dijisto to support 2019.1.0 version (#21707) 2021-02-17 21:42:44 -06:00
eugeneswalker
1dc161095a
openblas@0.13.3 cannot be built with gcc<10.2 on power (#21711) 2021-02-17 18:34:54 -08:00
Tomoki, Karatsu
1a32aaa10e
py-numpydoc: Add new version, and care for old version. (#21713) 2021-02-18 00:36:26 +00:00
Glenn Johnson
c11c5df738
Update the deps for the r package (#21654)
The dependencies needed a little clean up as several dependencies are
only needed for the +X variant. This PR consolidates all of the
dependencies that actually require +X and explicitly disables them when
~X to prevent accidentally picking up system libraries.

- modified the description of the +X variant
- arranges dependencies to group them
- added missing dependency on xz
- removed unneeded dependencies
	- freetype
	- glib
- set dependencies when +X
	- cairo
	- jpeg
	- libpng
	- libtiff
	- tcl/tk
- R uses tcl/tk together, so only tk needs to be depended on, and only
  when +X
- moved tcl/tk resources to with/without-x test
- added explicit with/without settings for
	- cairo
	- jpeglib
	- libpng
	- libtiff
	- tcltk
2021-02-17 17:39:05 -06:00
Andrew W Elble
151003a469
openssl: 1.1.1j (#21726) 2021-02-17 11:14:53 -06:00
Evan Bollig
d429265d8b
Bugfix for x86_64 skylake and other archs where SIMD features are disabled by Fall back option. (#21727) 2021-02-17 08:09:34 -08:00
Tomoki, Karatsu
3e72a12bfd
py-llvmlite: Specified llvm version for aarch64. (#21695)
* py-llvmlite: Specified llvm version for aarch64.

* Add ~flang variant to llvm dependencies.
2021-02-17 10:07:05 -05:00
ketsubouchi
1fe51ffe18
povray: add smoke test (#21667) 2021-02-16 22:54:20 +00:00
Andrew W Elble
aed52d7e79
py-typing: new version, avoid issues with newer versions of python (#21684)
* py-typing: new version, avoid issues with newer versions of python

https://pypi.org/project/typing/

"For package maintainers, it is preferred to use
typing;python_version<"3.5" if your package requires it to support
earlier Python versions."

* update conflict version / more message detail

* change the depends_on, leave a comment suggesting correct usage
2021-02-16 20:17:22 +00:00
Ryan S. Elliott
67874420c7
bump openkim-models to 2021.01.28 (#21637) 2021-02-16 11:01:06 -08:00
Michael Kuhn
c8406bd303
enzo: new package (#21634) 2021-02-16 10:42:01 -08:00
Andrew W Elble
0107d71b93
py-horovod: new versions (#21681)
* py-horovod: new versions

* 0.21.3

* dep changes

* fixes
2021-02-16 18:40:53 +00:00
Martin Pokorny
95ea54103f
Remove minimum version for cfitsio dependency (#21630)
The actual, documented minimum version of the cfitsio dependency,
v3.181, is now neither available for (easy) download from NASA, nor as
a Spack package. No upper bound on version number exists (at this time).
2021-02-16 10:17:16 -08:00
Harmen Stoppels
145a435100
Add hfp as a maintainer (#21671) 2021-02-16 11:23:01 -06:00
Glenn Johnson
60ee4199f5
Add manual_download attribute to packages (#21687)
Add `manual_download = True` to packages that need to do manual
downloads but do not have the `manual_download attribute set. This
provides a message when installing these packages rather than a generic
fetch error.
2021-02-16 17:10:19 +01:00
Glenn Johnson
8456a73a87
Add manual_download = True to genemark-et package (#21686) 2021-02-16 17:09:22 +01:00
ketsubouchi
04cff1136b
cqrlib: new package (#21532) 2021-02-16 17:03:48 +01:00
iarspider
cec1f9bd47
rsync: add support for external detection (#21669) 2021-02-16 16:57:55 +01:00
iarspider
d2a0235d4b
gruff: add support for external detection (#21646) 2021-02-16 16:57:02 +01:00
vvolkl
c0490ab30f
add hep tags to some newly added hep packages (#21653) 2021-02-16 16:34:14 +01:00
Mark W. Krentel
bd9289f99d
hpcviewer: add versions 2020.12 and 2021.01 (#21659)
Add versions 2020.12 and 2021.01.  The viewer and trace viewer are now
integrated into a single program and one tar ball.  Now available on
arm/aarch64 and now uses Java 11.
2021-02-16 16:33:54 +01:00
Andrew W Elble
6b521a3a5b
qcachegrind/valgrind: new versions (#21673) 2021-02-16 16:32:45 +01:00
Michael Kuhn
7f8b62620d
meson: add 0.57.0 (#21690) 2021-02-16 16:27:31 +01:00
Sergey Kosukhin
3cc2d91638
cdo: update PROJ dependency constraints (#21700) 2021-02-16 16:25:17 +01:00
Olivier Cessenat
e63b34ff77
New Package: hevea (#21616) 2021-02-16 11:49:23 +00:00
Sebastian Schmitt
bc9baac720
Update package for Arbor 0.5 (#21565) 2021-02-16 09:30:20 +00:00
Mark W. Krentel
f9831b5f65
hpctoolkit: pre-release update (#21613)
Update some things in hpctoolkit to prepare for a 2021.02.x release:

  1. allow binutils to be built with +nls.
  2. require libmonitor to be built with +dlopen.
  3. allow rocm in more than just develop branch.
  4. remove some conflicting setenv's in hpctoolkit module.
2021-02-16 08:47:37 +01:00
Desmond Orton
c1cc4ab1b8
New R Package: Chipseq@1.40.0 (#21689) 2021-02-15 16:36:44 -08:00
Michael Kuhn
c805b168d3
glib: add 2.66.7 (#21691) 2021-02-15 16:29:39 -08:00
a-saitoh-fj
e3bf23e292
py-dask: add v2020.12.0 (#20541) 2021-02-15 17:32:17 +00:00
Phil Carns
c55406abdf
deprecate margo package (all versions) (#21680)
- this is maintained in the "mochi-margo" package now instead
2021-02-15 11:16:12 -06:00
eugeneswalker
e2c16bfe22
llvm-doe: add +flang variant (#21610) 2021-02-15 11:13:32 -06:00
Tomoyasu Nojiri
6e18188d43
fujitsu-fftw: Add version 1.0.0 (#21664) 2021-02-15 10:26:21 +01:00
Tomoki, Karatsu
b6e2e731bc
py-numpy: check if execute commands are feasible. (#21507)
* py-numpy: check if execute commands are feasible.

* Apply patch to all versions.
2021-02-14 12:22:48 -06:00
Michael Kuhn
155bbab44b
py-questionary: new package (#21658) 2021-02-14 11:46:52 -06:00
Michael Kuhn
b111ef48da
py-prompt-toolkit: add 3.0.16 (#21657) 2021-02-14 08:36:18 -06:00
Jen Herting
871fdc12b6
New package: py-hyperopt (#21603)
* py-hyperopt for ...

* updates to hyperopt

* updates for mypy

* removed versions

* removed url

* fixed checksum

* fixed version of pyspark

* added 3:

* removed pyspark constraints and untested versions

* [py-hyperopt] removed version 0.2.4

* [py-hyperopt] added vairants spark, mongo, and atpe

* [py-hyperopt] added dependency on py-lightgbm

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-02-12 20:13:19 +00:00
Jen Herting
4649a251e6
New package: py-lightgbm (#21649)
* [py-lightgbm] created template

* [py-lightgbm] added homepage and description

* [py-lightgbm] added dependencies

* [py-lightgbm] build requires cmake

* [py-lightgbm] added mpi variant

* [py-lightgbm] removed fixmes

* [py-lightgbm] removed more fixmes
2021-02-12 13:34:08 -06:00
ketsubouchi
7add9de2e5
neartree: new package at v3.1 (#21534) 2021-02-12 19:00:54 +01:00
ketsubouchi
1e7fe89e1d
cvector: new package at v1.0.3 (#21533) 2021-02-12 17:07:25 +01:00
shanedsnyder
ad0ba8ce68
darshan-util" add "shared" variant (#21640) 2021-02-12 17:06:26 +01:00
Olivier Cessenat
ca7d1c29bc
ocamlbuild: new package (#21559) 2021-02-12 07:42:43 -06:00
iarspider
5d9c17d2bf
popt: depend on virtual iconv package (#21645) 2021-02-12 10:58:20 +00:00
AMD Toolchain Support
b53bf7cefd
xpmem: Added RHEL 8.3 support (#21563) 2021-02-12 11:01:55 +01:00
Cyrus Harrison
13852986a4
conduit: add v0.7.1 (#21639) 2021-02-12 10:35:14 +01:00
Ryan S. Elliott
f92580240e
Add support for KIM package in LAMMPS (#21638) 2021-02-11 19:10:45 -07:00
Tom Epperly
58b9c6dadd
Fix mumps compilation with gcc@10 (i.e., gfortran) (#21631)
* add new flag when compiling mumps with %gcc@10.

* Fix style

* Try to fix formatting

* Use flag_handler approach suggested by @michaelkuhn
	in the PR review.

* Delete former approach

* Another style issue

* Add another space

* More fixes
2021-02-12 01:14:09 +00:00
Daryl W. Grunau
0724467ad2
caliper: version upgrade to 2.5.0 (#21606)
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2021-02-11 20:34:22 +01:00
Dr. Christian Tacke
437d92155d
mesa18: Do not deprecate for now (#21627)
We still need mesa18 for some of our builds.
Those builds require python@2, normal mesa only works with
python@3.

* Remove the deprecation tag
* Add myself as a maintainer: I volunteer to help with this
  package for the time being.
* There is only one version, no need to prefer it.
2021-02-11 19:12:38 +00:00
Jen Herting
0dcb0d885f
[py-py4j] added version 0.10.9 (#21625) 2021-02-11 18:16:38 +00:00
Jen Herting
f7a05e0c61
[py-pyspark] new version and limited python for old versions (#21602)
* fixed install with ver 3 and python 3.0

* replaced @3 with @2.999

* [py-pyspark] added version requirements for py-py4j

* [py-pyspark] all versions require at least version 2.7 of python

* [py-pyspark] fixed comma syntax

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-02-11 11:16:29 -06:00
vvolkl
3d6e9e172d
genfit: set the ROOT prefix when building genfit (#21589)
Co-authored-by: lintao <lintao51@gmail.com>
2021-02-11 17:03:20 +01:00
Harmen Stoppels
f255c3eb76
libxc: add v5.1.0 (#21593) 2021-02-11 17:01:21 +01:00
Harmen Stoppels
882b8f9d42
spglib: add versions up to v1.16.1 (#21624) 2021-02-11 15:58:15 +00:00
Michael Kuhn
91d2c4f7db
meson: add 0.56.2 (#21608) 2021-02-11 16:46:01 +01:00
Erik Schnetter
7f003a77dd
nsimd: add v2.1 (#21623)
Updated variants and conflicts accordingly
2021-02-11 15:41:46 +00:00
Michael Kuhn
3268cf4b96
libfyaml: new package (#21604) 2021-02-11 16:41:16 +01:00
Michael Kuhn
ef5b15be40
libcyaml: new package (#21598) 2021-02-11 16:40:28 +01:00
Michael Kuhn
da46da1c2a
libyaml: add 0.2.5 (#21597) 2021-02-11 16:40:06 +01:00
Chuck Atkins
a57598defe
doxygen: fix gcc getting stuck in an infinite loop (#21614) 2021-02-11 16:35:51 +01:00
Michael Kuhn
e2084ea6fd
glib: add 2.66.6 (#21605) 2021-02-11 16:27:57 +01:00
M. Eric Irrgang
dea9334189
Apply compiler filters to GROMACS installation. (#21621)
The GROMACS package embeds references to its build tool chain.
Use the Spack utilities to make sure these references are correct
outside of the isolated Spack build environment.
2021-02-11 14:52:32 +00:00
victorusu
fd8eac7052
Add sanity checks to reframe recipe (#21622) 2021-02-11 15:35:57 +01:00
victorusu
2fbc8caf86
pygelf: add v0.4.0 (#21620) 2021-02-11 15:23:55 +01:00