Toyohisa Kameyama
ffdd94dd9f
hwloc: Add libudev variant. ( #16615 )
...
* hwloc: Add libudev variant.
* typo fix.
* Wrong version for libudev variant is fixed.
* Add maintainers.
2020-05-17 20:00:23 -05:00
Marko Kabic
a4d64402ae
Add new version of COSMA: 2.2.0 ( #16672 )
...
* Updated versions of COSMA.
* Added an empty line for formatting.
* Switched to sha256.
* Renamed gpu variant to cuda. Extending the CudaPackage base class.
2020-05-17 12:40:48 -05:00
Amjad Kotobi
045063da7f
r-spatstat-data: New package ( #16688 )
2020-05-17 12:28:26 -05:00
Amjad Kotobi
d776e52979
r-rms: New package ( #16683 )
...
* r-rms: New package
* r-rms: deleted duplicated dependency
* r-rms: deleting comma
2020-05-17 12:27:33 -05:00
Amjad Kotobi
9685792f83
r-spatialpack : New package ( #16664 )
...
* r-spatialpack : New package
* r-spatialpack : R dependeny added type
* r-spatialpack: Description was missing
2020-05-17 10:22:52 -05:00
Michael Kuhn
41907639c4
py-scipy: Fix build with gcc@10: ( #16687 )
2020-05-16 20:55:20 -05:00
Justin S
babfd144ad
py-fastcluster: new package at 1.1.26 ( #16588 )
...
* py-fastcluster: new package at 1.1.26
* py-fastcluster: add py-setuptools dep
2020-05-16 16:12:50 -05:00
Amjad Kotobi
5912b8c7cd
r-yaimpute: New package ( #16658 )
2020-05-16 16:07:58 -05:00
Amjad Kotobi
f71768b1d6
r-envstats: New package ( #16659 )
2020-05-16 16:07:10 -05:00
h-denpo
a97ce63218
New package frontistr ( #16660 )
...
"""Open-Source Large-Scale Parallel FEM Program for
Nonlinear Structural Analysis"""
2020-05-16 16:06:25 -05:00
Amjad Kotobi
6ca1052999
r-spatstat-utils : New package ( #16663 )
2020-05-16 16:03:49 -05:00
Mark W. Krentel
b858eebc51
hpctoolkit: add dependency on gotcha ( #16670 )
2020-05-16 15:59:33 -05:00
Paul
32238391a9
Add Go versions 1.14.3 and 1.13.11 ( #16673 )
2020-05-16 15:55:51 -05:00
darmac
110b15f20e
Add new package: hiredis ( #16679 )
2020-05-16 15:51:01 -05:00
darmac
b6498c44af
Add new package: guacamole-server ( #16680 )
2020-05-16 15:50:24 -05:00
Amjad Kotobi
983f05ac41
r-polspline: new package ( #16648 )
...
* r-polspline: new package
* r-polspline: updated urls
2020-05-16 09:07:34 -05:00
Omar Padron
97d7ef678d
fix catalyst so that it doesn't depend on a particular spelling of python ( #16667 )
2020-05-15 15:11:32 -04:00
Stephen Hudson
955a3db206
py-petsc4py: allow ~mpi variant ( #16595 )
...
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-15 15:14:06 +02:00
Michael Kuhn
90e15cae16
likwid: fix build with gcc@10: ( #16641 )
2020-05-15 13:23:57 +02:00
Michael Kuhn
154504da71
binutils: fix build with gcc@10: ( #16661 )
...
The issue seems to be fixed in the development version already.
2020-05-15 13:13:04 +02:00
Scott Wittenburg
e0572a7d96
Pipelines: Support DAG scheduling and dynamic child pipelines
...
This change also adds a code path through the spack ci pipelines
infrastructure which supports PR testing on the Spack repository.
Gitlab pipelines run as a result of a PR (either creation or pushing
to a PR branch) will only verify that the packages in the environment
build without error. When the PR branch is merged to develop,
another pipeline will run which results in the generated binaries
getting pushed to the binary mirror.
2020-05-14 21:11:07 -07:00
Toyohisa Kameyama
ea818caca3
namd: build on aarch64. ( #16639 )
2020-05-14 20:17:53 -05:00
Robert Blake
b987444871
Fixing the build directory for cardioid. ( #16640 )
...
* Fixing the build directory for cardioid.
* These imports are no longer needed due to deletions.
Co-authored-by: Robert Blake <rob.c.blake.3@gmail.com>
2020-05-14 20:16:55 -05:00
Michael Kuhn
5875bc6d6b
scorep: Fix build with gcc@10: ( #16642 )
2020-05-14 20:10:58 -05:00
Andrew W Elble
e21b4731a9
lammps: set LAMMPS_POTENTIALS in the runtime environment ( #16643 )
...
so lammps can find the installed potential files
2020-05-14 20:09:41 -05:00
Jen Herting
b562059d2a
New package: maloc ( #16631 )
...
* [maloc] created template
* [maloc] added some build dependencies
* [maloc] added homepage and description
* [maloc] added doc variant in an attempt to disable documentation. Still builds doc though... at least when there is a system doxygen found. Having doxygen being a dependency here can bring python in and cause issues for dependents, even when listed as only a build dependency. Maybe this is a bug?
* [maloc] flake8 and fixme removal
* [maloc] shorted description
2020-05-14 20:06:21 -05:00
Andrew W Elble
8c025324af
ucx: cuda / gdrcopy variants ( #16605 )
...
picking up where #15724 left off.
2020-05-14 20:04:06 -05:00
健美猞猁
0ed2fa3b9b
miniforge3: a new package. ( #16644 )
2020-05-14 19:50:11 -05:00
Michael Kuhn
c168e1b85e
at-spi2-core: Add 2.36.0 ( #16645 )
...
The pkg-config file of newer versions of at-spi2-core includes
dependencies for xtst, recordproto, inputproto and fixesproto, so they
have to be available at runtime as well.
2020-05-14 19:49:02 -05:00
Michael Kuhn
670a5e8766
atk: Add 2.36.0 ( #16646 )
2020-05-14 19:48:21 -05:00
Michael Kuhn
232aa9ff2e
at-spi2-atk: Add 2.34.2 ( #16647 )
2020-05-14 19:47:55 -05:00
Amjad Kotobi
0844e56d6d
r-hmisc: new version and updated dependency ( #16649 )
2020-05-14 19:46:02 -05:00
Amjad Kotobi
1eb5a12019
r-survival: new version and updated dependency ( #16650 )
2020-05-14 19:44:35 -05:00
Michael Kuhn
20b3e41831
adios2: Fix build with gcc@10: ( #16570 )
2020-05-13 19:46:13 -07:00
Nathan
48a35409e0
Spack Package for ns-3 ( #16630 )
...
* Adding ns3 spack
* Format and cleanup of ns3 spack package
* Removing comments and fixing boost variant
* Fixing formating
2020-05-13 21:16:17 -05:00
Adam J. Stewart
bc948c4418
py-horovod: add new version ( #16635 )
2020-05-13 17:52:27 -05:00
Nathan
c50b586e06
Helics: add python variant ( #16625 )
...
* Adding varient for python interface in HELICS
* Append python interface to pythonpath
* cleaning up blank lines
* Update var/spack/repos/builtin/packages/helics/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-13 17:25:07 -05:00
Nick Booher
f294c264a1
revbayes: Update checksum ( #16628 )
2020-05-13 12:54:21 -05:00
Toyohisa Kameyama
66b896d286
conda4aarch64:New Package. ( #16617 )
2020-05-13 12:49:42 -05:00
Michael Kuhn
a9ee4da670
ncl: Fix build with gcc@10: ( #16624 )
2020-05-13 12:45:12 -05:00
Amjad Kotobi
9b8082ecf3
r-exactextractr: new package ( #16626 )
2020-05-13 12:42:16 -05:00
Nichols A. Romero
fa57f1da29
QE Update May 2020 ( #16627 )
...
* Clarify comments about QMCPACK-to-QE converter.
* Allow hdf5=serial with QE 6.4.1 + qmcpack, but apply filter_file.
* Ammend comments about the use of the filter_file.
2020-05-13 12:41:16 -05:00
lpritch-lanl
043d507540
py-pint: added versions up to v0.11 ( #16537 )
...
Co-authored-by: Lori Pritchett-Sheats <lpritch@pn2002926.lanl.gov>
2020-05-13 16:47:01 +02:00
Michael Kuhn
308f016f31
parallel-netcdf: fix build with gcc@10: ( #16620 )
2020-05-13 16:44:50 +02:00
Amjad Kotobi
f6fbf8b8d3
r-xml2: new version & updated dependencies ( #16604 )
...
* r-xml2: new version & updated dependencies
* r-xml2: updated dependencies
2020-05-13 09:22:53 -05:00
Tomoki, Karatsu
a740c361cd
ppopen-appl-fdm: added support to Fujitsu compilers. ( #16616 )
2020-05-13 15:10:07 +02:00
Toyohisa Kameyama
4777284f08
charmpp: support for aarch64. ( #16619 )
2020-05-13 15:06:25 +02:00
Michael Kuhn
b4052eb3b8
tcsh: fix build with gcc@10: ( #16621 )
2020-05-13 14:57:12 +02:00
Michael Kuhn
aaf3388cfe
esmf: fix build with gcc@10: ( #16622 )
2020-05-13 14:53:49 +02:00
Chris White
fdf38ec991
Fix axom install target ( #16613 )
2020-05-12 16:57:25 -07:00
Pariksheet Nanda
f43b7824ca
py-plotly: unfix dependency versions ( fixes #16544 ) ( #16546 )
...
* py-plotly: unfix dependency versions (fixes #16544 )
* py-plotly: add missing dependencies for #16546
* py-plotly: match setup.py instead of requirements.txt for #16546
2020-05-12 17:06:18 -05:00
Justin S
0f2a581276
velvetoptimiser: new package at 2.2.6 ( #16611 )
2020-05-12 17:05:19 -05:00
Amjad Kotobi
ab92407940
r-testthat : dependencies and version updated ( #16576 )
...
* r-testthat : dependencies and version updated
* Adding version conditions for dependencies
* r-testthat: Fix dependecies condition
2020-05-12 17:05:01 -05:00
Adam J. Stewart
b4e587bd0b
py-scikit-learn: add new version ( #16607 )
2020-05-12 16:43:56 -05:00
Justin S
1d76067d7a
zstd: add 1.4.4 ( #16608 )
2020-05-12 16:43:43 -05:00
Adam J. Stewart
6b41fb88a9
py-threadpoolctl: add new package ( #16606 )
2020-05-12 14:33:10 -05:00
Nick Booher
9bdf4564db
revbayes: update for 1.1.0 ( #16603 )
...
* revbayes: update for 1.1.0
* revbayes: Fix flake8
2020-05-12 14:26:44 -05:00
Amjad Kotobi
154c0f5771
new version r-rcurl ( #16550 )
...
* new version r-rcurl
* RCurl dependency R version updated
* Adding version conditions
2020-05-12 11:42:58 -05:00
Amjad Kotobi
78d8dd0815
new version r-cli ( #16553 )
...
* new version r-cli
* r-cli : dependencies updated
* Adding version conditions for dependencies
2020-05-12 11:42:20 -05:00
Amjad Kotobi
bfa707dfc4
new version r-ellipsis ( #16556 )
...
* new version r-ellipsis
* r-ellipsis : R dependency updated
* Adding version conditions for dependencies
2020-05-12 11:41:41 -05:00
Amjad Kotobi
d4c8c8b80d
r-rematch2 : new package ( #16563 )
...
* r-rematch2 : new package
* Updating URL
2020-05-12 11:41:20 -05:00
Amjad Kotobi
b99a5369ce
r-roxygen : dependencies and version updated ( #16565 )
...
* r-roxygen : dependencies and version updated
* Dependencies updated for condition
2020-05-12 11:40:55 -05:00
Amjad Kotobi
7528e1eb45
r-purrr : dependencies and version update ( #16566 )
...
* r-purrr : dependencies and version update
* Dependencies updated for condition
2020-05-12 11:39:39 -05:00
Amjad Kotobi
173823e77d
r-rversions : new package ( #16572 )
...
* r-rversions : new package
* URL updated r-rversions
2020-05-12 11:39:08 -05:00
Amjad Kotobi
14b80ecaf2
r-withr : dependencies and version updated ( #16577 )
...
* r-withr : dependencies and version updated
* Adding version conditions for dependencies
2020-05-12 11:36:25 -05:00
Amjad Kotobi
7c327ed447
r-knitr : dependencies and version updated ( #16579 )
...
* r-knitr : dependencies and version updated
* Adding version conditions for dependencies
2020-05-12 11:35:41 -05:00
Tomoki, Karatsu
278f8eb7fe
modylas: Add flag to use preprocessor when building with Fujitsu compiler. ( #16598 )
2020-05-12 11:34:28 -05:00
Jose E. Roman
8b06bd7198
New patch release SLEPc 3.13.2 ( #16601 )
2020-05-12 11:33:46 -05:00
Andrew W Elble
e36aa96392
py-horovod: link dependency for py-torch ( #16600 )
...
fix for same reasons as #16495 .
2020-05-12 11:24:30 -05:00
Toyohisa Kameyama
7813e41464
caffe: fixed build error ( #16520 )
...
* opencv 3.2 requires cmake 3.11 or older.
caffe dependency is changed.
* revert opencv variant to caffe.
backport to opencv errors.
2020-05-12 09:39:19 -05:00
Sergey Kosukhin
d1a5dc792e
py-dask: new version ( #16531 )
...
* py-dask: new version
* py-dask: update the constraints.
* py-dask: add a list of maintainers.
2020-05-12 09:35:11 -05:00
Michael Kuhn
15112f9dba
gcc: fix several issues ( #16599 )
...
- GCC has moved to Git
- The develop/master version requires flex
- Add myself as a maintainer
- Set the library path in the zstd patch
2020-05-12 13:56:58 +02:00
Todd Gamblin
a44f487a1d
z3: update python dependency ( #16597 )
...
-[x] `z3` needs a dependency on `py-setuptools`
-[x] `z3` has a run dependency on `python`, so we might as well make
building with the python bindings default
2020-05-12 11:15:42 +02:00
Justin S
80e7a61597
prokka: new package at v1.14.6 ( #16282 )
2020-05-12 10:09:01 +02:00
Todd Gamblin
269bcfe1c8
clingo: update package ( #16594 )
...
`clingo` has some undocumented dependencies:
- `bison`, for which the default macos version is too old
- `re2c`, which isn't always available
Also, the python installation was not set up properly. Clingo by default
does an install in `~/.local`, so we need to disable that and add a few
other options to get things right.
- [x] add `bison` dependency
- [x] add `re2c` dependency
- [x] make `doxygen` dependency optional (and patch if needed)
- [x] add options to fix `python` build
- [x] make python build optional but on by default
2020-05-12 09:41:31 +02:00
Tomoki, Karatsu
a59b92d303
xabclib: added support for Fujitsu compiler. ( #16596 )
...
- Added Fujitsu compiler options that have the same functions as the options added for GCC
- Added option to link C objects
2020-05-12 09:40:11 +02:00
Sajid Ali
b526a90220
Charm++: fix build prefix; add ucx/pmi support ( #15666 )
...
* Add pmi support (required by ucx, ofi, and gni backends)
* Add support for ucx backend
* Add dependency on MPI for pmi=simplepmi, slurmpmi, or slurmpmi2
* Remove charmpp as an MPI provider since the changes in this PR can
add MPI as a dependency (mentioned previously)
* Install into transport_protocol-OS-arch subdirectory to match
default charmpp installation behavior (which helps dependents find it)
2020-05-11 16:27:38 -07:00
Greg Becker
fa702b8311
python: add -fwrapv to cflags for python@3.8.0: %intel ( #16592 )
2020-05-11 18:02:56 -05:00
Michael Kuhn
35c3478fcd
fio: Add 3.19 ( #16571 )
...
Earlier versions are not compatible with gcc@10:.
2020-05-11 16:54:28 -05:00
Michael Kuhn
97779e3539
adios: Fix build with gcc@10: ( #16569 )
2020-05-11 16:54:08 -05:00
asmaahassan90
1367b63e99
Add avizo version 2020.1 ( #16567 )
2020-05-11 12:56:50 -05:00
Adam J. Stewart
98fd62254f
py-plac: remove erroneous argparse dependency ( #16584 )
2020-05-11 12:56:07 -05:00
Michael Kuhn
5ed5c55ebd
mpich: Fix build with gcc@10: ( #16568 )
2020-05-11 12:55:36 -05:00
Amjad Kotobi
4c666034dc
r-rstudioapi : new version ( #16574 )
2020-05-11 12:49:27 -05:00
Amjad Kotobi
3ddf6c0845
r-rlang : new version ( #16575 )
2020-05-11 12:48:51 -05:00
Amjad Kotobi
5e348f7133
r-digest : version updated ( #16578 )
2020-05-11 12:43:38 -05:00
Andrew Gaspar
2c009a3226
Map the spack skylake arch to Kokkos BDW, rather than SKX ( #16583 )
...
SKX includes AVX-512 extensions that consumer Skylake processors do
not have. Therefore, map Skylake to the prior arch to work on
these systems. Skylake-X processors will still map as the
skylake_avx512 spack arch and get the correct optimzations.
2020-05-11 12:33:34 -05:00
Justin S
20a4e5efe8
stata: add new libpng dependency ( #16582 )
2020-05-11 12:32:36 -05:00
Michael Kuhn
cd2e906702
netcdf-fortran: Fix build with gcc@10: ( #16573 )
2020-05-11 12:31:40 -05:00
Jen Herting
c220a22b69
New package: py-mmcv ( #16536 )
...
* [py-mmcv] Created template
* [py-mmcv] added description and homepage
* [py-mmcv] requires python 3.6+
* [py-mmcv] added dependencies
* [py-mmcv] depends on opencv
* [py-mmcv] cleaned up fixmes
* [py-mmcv] requires numpy >= 1.11.1
2020-05-11 12:14:22 -05:00
Michael Kuhn
03d0a7ee1e
gcc: added v10.1.0 ( #16525 )
2020-05-11 16:22:19 +02:00
Sinan
ff6a0fc7b0
py-configobj: remove url function ( #16522 )
...
It seems the pypi version of the package somehow compiles just fine
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-05-11 10:43:56 +02:00
takanori-ihara
e08792cbcb
py-jupyterlab: added package at v2.1.0 ( #16562 )
2020-05-11 10:35:44 +02:00
takanori-ihara
fa8dede6cd
Add new package:py-jupyterlab-server ( #16561 )
2020-05-10 21:32:53 -05:00
Adam J. Stewart
c03d4688e4
PyTorch: fix master and mkldnn builds ( #16560 )
2020-05-10 19:40:00 -05:00
Amjad Kotobi
7d3b40fba4
new version r-rcpp ( #16549 )
2020-05-10 17:39:20 -05:00
Amjad Kotobi
6c820dd6b5
new version r-glue ( #16558 )
2020-05-10 17:38:51 -05:00
Amjad Kotobi
36941e3d94
new version r-pkgbuild ( #16559 )
2020-05-10 17:38:38 -05:00
Amjad Kotobi
5dc51c21bb
new version r-jsonlite ( #16557 )
2020-05-10 17:38:26 -05:00
Amjad Kotobi
f32d561e9b
new version r-dt ( #16555 )
2020-05-10 15:31:58 -05:00
