* Spec.splice feature
Construct a new spec with a dependency swapped out. Currently can only swap dependencies of the same name, and can only apply to concrete specs.
This feature is not yet attached to any install functionality, but will eventually allow us to "rewire" a package to depend on a different set of dependencies.
Docstring is reformatted for git below
Splices dependency "other" into this ("target") Spec, and return the result as a concrete Spec.
If transitive, then other and its dependencies will be extrapolated to a list of Specs and spliced in accordingly.
For example, let there exist a dependency graph as follows:
T
| \
Z<-H
In this example, Spec T depends on H and Z, and H also depends on Z.
Suppose, however, that we wish to use a differently-built H, known as H'. This function will splice in the new H' in one of two ways:
1. transitively, where H' depends on the Z' it was built with, and the new T* also directly depends on this new Z', or
2. intransitively, where the new T* and H' both depend on the original Z.
Since the Spec returned by this splicing function is no longer deployed the same way it was built, any such changes are tracked by setting the build_spec to point to the corresponding dependency from the original Spec.
Co-authored-by: Nathan Hanford <hanford1@llnl.gov>
* Made DiHydrogen a required dependencies on newer versions of LBANN.
Added an explicit variant for enabling Boost-dependent callbacks.
Updated the separation for embedded Python and the Python front end
code and associated dependencies.
* Bugfix on ROCm include in DiHydrogen
BlasPP by ECP SLATE will fail to install by default
(`spack install blaspp`) because:
- the default BLAS installation in Spack is OpenBLAS
- BlasPP conflicts with `threads=none` for all recent OpenBLAS releases
OpenBLAS introduced a threadsafe compile option
with 0.3.7+ aka `USE_LOCKING`:
```
61 # If you want to build a single-threaded OpenBLAS, but expect to call this
62 # from several concurrent threads in some other program, comment this in for
63 # thread safety. (This is done automatically for USE_THREAD=1 , and should not
64 # be necessary when USE_OPENMP=1)
65 # USE_LOCKING = 1
```
According to tests, with `spack install --test root blaspp`,
this exactly addresses the issues in BlasPP tests.
It also seems to be a good option to set by default for OpenBLAS and
users that do not need this safety net can always disable it.
Solve issues with newer OpenBLAS by requiring
`+locking` over none-default threading options.
* Improve error message for inconsistencies in package.py
Sometimes directives refer to variants that do not exist.
Make it such that:
1. The name of the variant
2. The name of the package which is supposed to have
such variant
3. The name of the package making this assumption
are all printed in the error message for easier debugging.
* Add unit tests
* Also removed LBANN CUDA CMake flags that are set by the
version of Hydrogen that is compiled against.
* Updated recipes to use HWLOC 2.3 with ROCm to enable
topology awareness.
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
* genesis: New package.
* fujitsu-ssl2: fix unit test error
* genesis: Fix for comments and add test method
* genesis: Fix for comments
* genesis: Fix for comments
* libblastrampoline: new package
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
It turns out there are certain cases where having Open MPI use an external hwloc messes up other
applications that also rely on hwloc, but a different version.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
* VTK-m: No `pic` variant
A leftover conflict between `shared` and `pic` variants, the
latter is not part of the package anymore, leads to a solver
error with clingo.
This removes the outdated conflict section.
* VTK-m: Kokkos AMD GPU variant changed
Set the minimun C++ standard for LBANN, Hydrogen, and DiHydrogen to
C++17. The minumim C++ standard for Aluminum is C++14. Add new
versions for Aluminum, Hydrogen, and DiHydrogen. Added support for
high performance linkers in LBANN recipe (gold and lld). Added
variants to LBANN for enabling embedded Python support independently
from the Python front end.
* py-fenics-instant: new package for legacy fenics 2016 and 2017 versions
* Update var/spack/repos/builtin/packages/py-fenics-instant/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Keep spack.store.store and spack.store.db consistent in unit tests
* Remove calls to monkeypatch for spack.store.store and spack.store.db:
tests that used these called one or the other, which lead to
inconsistencies (the tests passed regardless but were fragile as a
result)
* Fixtures making use of monkeypatch with mock_store now use the
updated use_store function, which sets store.store and store.db
consistently
* subprocess_context.TestState now transfers the serializes and
restores spack.store.store (without the monkeypatch changes this
would have created inconsistencies)
The dependencies needed a little clean up as several dependencies are
only needed for the +X variant. This PR consolidates all of the
dependencies that actually require +X and explicitly disables them when
~X to prevent accidentally picking up system libraries.
- modified the description of the +X variant
- arranges dependencies to group them
- added missing dependency on xz
- removed unneeded dependencies
- freetype
- glib
- set dependencies when +X
- cairo
- jpeg
- libpng
- libtiff
- tcl/tk
- R uses tcl/tk together, so only tk needs to be depended on, and only
when +X
- moved tcl/tk resources to with/without-x test
- added explicit with/without settings for
- cairo
- jpeglib
- libpng
- libtiff
- tcltk
* py-typing: new version, avoid issues with newer versions of python
https://pypi.org/project/typing/
"For package maintainers, it is preferred to use
typing;python_version<"3.5" if your package requires it to support
earlier Python versions."
* update conflict version / more message detail
* change the depends_on, leave a comment suggesting correct usage
The actual, documented minimum version of the cfitsio dependency,
v3.181, is now neither available for (easy) download from NASA, nor as
a Spack package. No upper bound on version number exists (at this time).
Add `manual_download = True` to packages that need to do manual
downloads but do not have the `manual_download attribute set. This
provides a message when installing these packages rather than a generic
fetch error.
Add versions 2020.12 and 2021.01. The viewer and trace viewer are now
integrated into a single program and one tar ball. Now available on
arm/aarch64 and now uses Java 11.
Update some things in hpctoolkit to prepare for a 2021.02.x release:
1. allow binutils to be built with +nls.
2. require libmonitor to be built with +dlopen.
3. allow rocm in more than just develop branch.
4. remove some conflicting setenv's in hpctoolkit module.
* add new flag when compiling mumps with %gcc@10.
* Fix style
* Try to fix formatting
* Use flag_handler approach suggested by @michaelkuhn
in the PR review.
* Delete former approach
* Another style issue
* Add another space
* More fixes
We still need mesa18 for some of our builds.
Those builds require python@2, normal mesa only works with
python@3.
* Remove the deprecation tag
* Add myself as a maintainer: I volunteer to help with this
package for the time being.
* There is only one version, no need to prefer it.
* fixed install with ver 3 and python 3.0
* replaced @3 with @2.999
* [py-pyspark] added version requirements for py-py4j
* [py-pyspark] all versions require at least version 2.7 of python
* [py-pyspark] fixed comma syntax
Co-authored-by: Sid Pendelberry <sid@rit.edu>
The GROMACS package embeds references to its build tool chain.
Use the Spack utilities to make sure these references are correct
outside of the isolated Spack build environment.
cmake was added as a runtime dependency to meson in #20449. This
introduces an unnecessary implicit cmake dependency, which increases
build time for meson considerably. cmake is only one of many methods for
finding dependencies (pkg-config, qmake etc.), which are also not
runtime dependencies of meson. Add cmake as a build dependency to mesa
instead.
* [py-moviepy] created template
* [py-moviepy] added dependencies
* [py-moviepy] removed fixmes, added homepage and description
* [py-moviepy] updated to pypi and updated checksum
* [py-moviepy] added setuptools dependency
* [py-moviepy] more specific version limit
* [py-moviepy] added checksum for version 1.0.1
* [py-moviepy] numpy restriction not nesessary here
* 3DTK: add new package
* Add missing opencv variants
Co-authored-by: Michael Kuhn <michael@ikkoku.de>
* Fix cmake version req, add eigen dep
* Prefer trunk version
* Tell 3dtk where to find eigen
* Fix installation
* Fix installation
Co-authored-by: Michael Kuhn <michael@ikkoku.de>
This PR fixes the case where groff fails to build if the spack install
path is really long. There are a couple of perl scripts that get built,
and used, during the build phase that will fail when the perl
interpreter line is too long. Filtering the lines will not work because
the files don not exist after the configure phase and patching after the
build phase is too late. This PR runs the scripts explicitly with the
spack perl via the $(PERL) variable in the call to the script.
* Procedure to deprecate old versions of software
* Add documentation
* Fix bug in logic
* Update tab completion
* Deprecate legacy packages
* Deprecate old mxnet as well
* More explicit docs
* py-dvc: new package
* Update var/spack/repos/builtin/packages/py-dvc/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-dvc: add version dependency for py-networkx
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Clarify relaxed double precision option
This is only intended for use on the Fujitsu PRIMEHPC platform
* Fix typo
* Shorten line to keep linter happy
Added conflict for macsio@1.1~mpi after investigating source code. As of
1.1 tag macsio does not properly guard out MPI commands. This is
verified as corrected in @develop
* mxnet: convert to CMakePackage
* Package isn't installed yet, can't find libs
* Fix bug with GCC 8+ and CUDA 10 on PowerPC
* Add space
* Add patch to fix cmake cuda flags
* Space no longer needed
* Add patch to fix OpenBLAS linking
* Add missing CMake flag
* Fix env set, default to Distribution
* Add new version, patch
* added py-python-benedict recipe
* Update var/spack/repos/builtin/packages/py-python-benedict/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
