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Author SHA1 Message Date
arjun-raj-kuppala
9c8cfcca0f
Adding hipify-clang and aomp recipe for rocm (#18333) 
* Adding aomp recipe for rocm 3.5.0 release

* hipify-clang rocm recipe

* incorporated suggested changes on PR#18333 for rocm aomp recipe

* remove binutils dependency and update to devicelibs tar path
 2020-09-09 13:47:51 -05:00
Jen Herting
857530c5ae
[parallel] added version 20200822 (#18591) 2020-09-09 10:58:07 -07:00
Robert Brunner
1ae50f8022
Added specific "@master" version specifier for component libraries when building (#18579) 
the develop version of SCR
 2020-09-09 12:52:36 -05:00
Jen Herting
f7d1f845f4
[py-thinc] fixed checksum (#18571) 2020-09-09 11:25:06 -05:00
Garth N. Wells
3dedd2e321
(py-)fenics-dolfinx: fix dependencies (#18586) 
* Fix (py-)fenics-dolfinx dependencies

* flake8 updates
 2020-09-09 10:55:06 -05:00
Ganesh Kumar
4c5151327f
Rocm 3.7 rccl (#18587) 
* ROCm 3.5 miopen recipe

* fixing flake8 issues

* cmake variant fix

* min support fix

* variant possible values

* ROCm 3.7 RCCL changes
 2020-09-09 10:49:40 -05:00
Ganesh Kumar
a18700a86a
Rocm 3.7 rocm smi (#18522) 
* ROCm 3.5 miopen recipe

* fixing flake8 issues

* cmake variant fix

* min support fix

* variant possible values

* ROCm 3.7 support for rocm-smi

* review comments change

* miopen merge conflict resolve

* reverting back from copy_tree to install_tree
 2020-09-09 08:22:40 -05:00
Simon Frasch
290b77fe43
spla: Add version 1.1.0 and ROCm support (#18561) 2020-09-09 07:22:53 -05:00
Toyohisa Kameyama
4472914847
audacious: added gettext and iconv dependency. (#18584) 2020-09-09 11:23:01 +02:00
Adam J. Stewart
8494d26c0a
nn-c: fix pic flags (#18478) 2020-09-09 10:25:57 +02:00
Adam J. Stewart
ba47a057f0
py-torchvision: add variant to set image backend (#18500) 2020-09-09 10:16:50 +02:00
Adam J. Stewart
96364235e3
readline: fix build with ncurses~termlib (#18524) 2020-09-09 10:12:46 +02:00
Adam J. Stewart
4307b73299
pcre2: fix libs property (#18525) 2020-09-09 10:11:29 +02:00
Hadrien G
d24532f574
acts: added v0.32 and adapt to latest master changes (#18563) 2020-09-09 09:44:44 +02:00
Adam J. Stewart
346d12dc6c
Pandas: added v1.1.2 (#18580) 2020-09-09 09:32:56 +02:00
t-nojiri
d11705f9d0
r-ff: support for aarch64 (#18585) 2020-09-09 09:01:51 +02:00
darmac
e3cd3fb9eb
Add new package: quartz (#18539) 2020-09-08 21:29:26 -05:00
Martin Aumüller
ab51edecb5
openscenegraph: remove dependency on Qt for newer versions (#18531) 
Starting with OpenSceneGraph 3.5.5, support for windows managed by Qt
has been moved to the seperate project osgQt. Hence, a dependency on Qt
is not needed any longer for version 3.5.5 or newer.
In order to still satisfy the dependency on OpenGL, a depends_on('gl')
has been added.
 2020-09-08 21:28:27 -05:00
darmac
b1cea5c23e
Add new package: kylin (#18537) 
Co-authored-by: root <root@localhost.localdomain>
 2020-09-08 21:27:01 -05:00
darmac
275ac86925
Add new package: sqlite-jdbc (#18540) 2020-09-08 21:26:11 -05:00
darmac
0f4f4a2e95
Add new package: orientdb (#18542) 2020-09-08 21:21:35 -05:00
darmac
97b7af01d9
Add new package: nacos (#18543) 2020-09-08 21:20:41 -05:00
darmac
0325cb564b
Add new package: fastjson (#18545) 2020-09-08 21:17:19 -05:00
darmac
a0ba89d84a
Add new package: guacamole-client (#18546) 2020-09-08 21:15:52 -05:00
darmac
a12ced781c
Add new package: jansi-native (#18547) 2020-09-08 21:14:49 -05:00
darmac
fe05fc7fd5
Add new package: jline3 (#18548) 2020-09-08 21:14:00 -05:00
darmac
1ac24aca96
refine efivar install flow (#18557) 2020-09-08 21:08:38 -05:00
Jaroslav Hron
e2e90e4d6b
Update package.py (#18552) 
without setting the build enviroment, the installation fails with

```
1 error found in build log:
     35946    fmtutil [INFO]: /usr/local/pkg/Installs/linux-ubuntu18.04-skylake_avx512/gcc7.4.0/texlive/20190410/rgs2nakycorkgzno/t
              exmf-var/web2c/pdftex/pdfcslatex.fmt installed.
     35947    fmtutil [INFO]: Disabled formats: 6
     35948    fmtutil [INFO]: Successfully rebuilt formats: 45
     35949    fmtutil [INFO]: Total formats: 51
     35950    fmtutil [INFO]: exiting with status 0
     35951    ==> [2020-09-07-21:23:21.482745] '/usr/local/pkg/Installs/linux-ubuntu18.04-skylake_avx512/gcc7.4.0/texlive/20190410/
              rgs2nakycorkgzno/bin/x86_64-linux/mtxrun' '--generate'
  >> 35952    /usr/bin/env: 'texlua': No such file or directory
```

May be there is a better way...
 2020-09-08 21:05:18 -05:00
Garth N. Wells
af189e3ed9
Fix linking problem on macos (#18564) 2020-09-08 21:01:21 -05:00
Andrew W Elble
520308ad2b
astra: update checksum, add other executables (#18567) 2020-09-08 21:00:27 -05:00
Tom Payerle
7165795c4a
libxmms: add python build dependency (#18566) (#18568) 
Build of libxmms requires python, but not in spack dependency list.
See  #18566
 2020-09-08 20:59:22 -05:00
Michael Kuhn
017331684e
go: Add 1.15.1 and 1.14.8 (#18575) 2020-09-08 20:56:08 -05:00
Michael Kuhn
e43855bc8f
node-js: Add 14.10.0 and 12.18.3 (#18576) 2020-09-08 20:55:40 -05:00
Michael Kuhn
9c4d79f8cd
npm: Add 6.14.8 (#18577) 2020-09-08 20:55:12 -05:00
Adam J. Stewart
2f4d493744
Cython: add setuptools run-dependency (#18572) 
Cython requires a library that is available in Python 3.8, or before
Python 3.8 with setuptools. This specifies that setuptools is a run
dependency to allow running with Python < 3.8
 2020-09-08 17:27:49 -07:00
Tamara Dahlgren
6b30cd18d6
Update cray-libsci homepage and install error (#18581) 2020-09-08 16:22:25 -06:00
Michal Sudwoj
7205a75427
Added nvptx variant to rust (#18209) 
Co-authored-by: Andrew Gaspar <andrew.gaspar@outlook.com>

Co-authored-by: Andrew Gaspar <andrew.gaspar@outlook.com>
 2020-09-08 11:28:59 -05:00
Gvozden Neskovic
c2b33b4444
gromacs: add zen2 target SIMD optimizations (#18551) 
Co-authored-by: Gvozden Nešković <neskovic@dev06.compeng.uni-frankfurt.de>
 2020-09-08 06:52:56 -06:00
Piotr Luszczek
73110b415d
hpcc: add explicit C99 flag for older GCC versions (#18556) 2020-09-08 08:30:02 +02:00
Mark W. Krentel
850924e423
hpctoolkit: adjust some dependencies (#18558) 
Hpctoolkit master and upcoming releases now want the +pic variant for
two dependencies, libunwind and xz.
 2020-09-08 08:27:39 +02:00
Axel Huebl
64273da2cc
openPMD-api: added v0.12.0 (#18560) 2020-09-08 08:18:21 +02:00
jthies
dcee0a1d5d
phist: added v1.9.1 (#18529) 2020-09-07 17:52:07 +02:00
ketsubouchi
03a808ec2d
kim-api: add support for Fujitsu compilers (#18533) 2020-09-07 17:47:55 +02:00
Andre Sailer
138e2ad0a1
[LCIO]: changes to install/CPATH for python bindings (#18512) 2020-09-07 10:16:16 -05:00
darmac
b2b7bcd86a
Add new package: kbd (#18436) 
* Add new package: kbd

* fix description error
 2020-09-07 10:12:47 -05:00
Tim Haines
8b7ca5ef50
capstone: added v4.0.2 (#18534) 
This also adds the git branches "master" and "next".
 2020-09-07 16:04:23 +02:00
darmac
5e86a131d2
jansi: added new package at v1.18 (#18549) 2020-09-07 16:02:18 +02:00
ketsubouchi
80691fa6d5
gconf: add dependencies (#18406) 
* gconf: add dependencies

* gconf: add run type to perl-xml-parser
 2020-09-06 22:33:42 -05:00
Andrew W Elble
8ad581e7b3
new package: py-textblob (#18516) 
* new package: py-textblob

add variant to py-nltk to allow for data download/installation
add dependencies to py-nltk so that bin/nltk works

* add resources and resource generation script
 2020-09-05 11:50:03 -05:00
Satish Balay
b494f50489
petsc4py: repo is migrated from bitbucket to gitlab (#18519) 2020-09-05 10:18:48 -05:00
Massimiliano Culpo
ba257914b3
fujitsu: added new package (#18021) 
The package is at the moment not installable, just detectable.

Co-authored-by: Toyohisa Kameyama <kameyama@riken.jp>
 2020-09-05 10:40:52 +02:00
Ganesh Kumar
704fc475e3
ROCm3.5 miopen recipe (#18442) 
* ROCm 3.5 miopen recipe

* fixing flake8 issues

* cmake variant fix

* min support fix

* variant possible values
 2020-09-04 17:02:33 -05:00
Nick Booher
61ae21ee4d
energyplus: add version 9.1 (#18485) 2020-09-04 16:13:53 -05:00
mic84
c5e50b73ef
amrex:: new version 20.09 (#18486) 2020-09-04 16:13:20 -05:00
Tom Payerle
2cc7718edd
bml: Add build dependency on python (#18489) (#18491) 
At some point in the build phase a script
spack-src/scripts/convert-template
has a shebang looking for python in the path.

Currently this picks up system python if in invoker's path, but should
be using python from spack, so add a build dependency on python.
 2020-09-04 16:12:53 -05:00
Michael Kuhn
518372ccd1
mariadb-c-client: Add 3.1.9 (#18501) 2020-09-04 16:03:43 -05:00
Michael Kuhn
ca2760381b
py-setuptools: Add 50.1.0 and 49.6.0 (#18502) 2020-09-04 16:03:20 -05:00
Michael Kuhn
f836d93da1
rocksdb: Add 6.11.4 (#18503) 2020-09-04 16:01:30 -05:00
Michael Kuhn
f2adf531b3
glib: Add 2.64.5 (#18505) 2020-09-04 16:00:07 -05:00
Michael Kuhn
262edde2c1
libbson, mongo-c-driver: Add 1.17.0 (#18506) 2020-09-04 15:59:43 -05:00
Michael Kuhn
14983401a1
libidn2: Add 2.3.0 (#18507) 2020-09-04 15:59:16 -05:00
Michael Kuhn
972caba882
curl: Add 7.72.0 (#18508) 2020-09-04 15:58:52 -05:00
Michael Kuhn
53bf97298f
gettext: Add 0.21 (#18509) 2020-09-04 15:58:30 -05:00
iarspider
0c03248537
Add madgraph 2.8.0; fix recipe (#18510) 2020-09-04 15:58:04 -05:00
Luke Dalessandro
8e41208c65
Build libtinfo.so "--with-versioned-syms" when it is enabled in ncurses. (#18511) 
Many system-installed binaries (at least in Debian) are built against a
libtinfo.so that has versioned symbols. If spack builds a version without this
functionality, and it winds up in the user's LD_LIBRARY_PATH via spack load,
system binaries will begin to complain.

```
$ less log.txt
less: /opt/spack/.../libtinfo.so.6: no version information available (required by less)
```

Co-authored-by: Luke D'Alessandro <ldalessa@uw.edu>
 2020-09-04 15:54:44 -05:00
Andrew W Elble
f4d3a1a0cb
new package: py-markovify (#18517) 2020-09-04 15:46:38 -05:00
t-nojiri
f3c4747318
fermikit: added support for aarch64 (#18480) 2020-09-04 19:52:10 +02:00
Adam J. Stewart
6fcec1dcff
Python: default to Python 3.8 (#17798) 2020-09-03 16:15:43 -07:00
Adam J. Stewart
0eca977cc9
py-pillow-simd: fix concretization (#18490) 2020-09-03 15:36:20 -07:00
Adam J. Stewart
7d9f2bf4ed
depends_on cannot handle ^ sigil (#18220) 
* depends_on cannot handle ^ sigil

* cardioid+mfem+cuda requires hypre+cuda

* Document this limitation

* Move warning message to Known Issues docs

* Better handling of parmetis dep
 2020-09-03 17:31:00 -05:00
Adam J. Stewart
7728b0737b
Add new MavenPackage build system base class (#18185) 
* Add new MavenPackage build system base class

* Fix flake8 and doc tests

* More specific regex

* Java 8 required for these packages
 2020-09-03 17:30:39 -05:00
Adam J. Stewart
741bb9bafe
install/install_tree: glob support (#18376) 
* install/install_tree: glob support

* Add unit tests

* Update existing packages

* Raise error if glob finds no files, document function raises
 2020-09-03 10:47:19 -07:00
Adam J. Stewart
098beee295
Pillow-SIMD: use as default PIL provider (#18097) 
* Pillow-SIMD: use as default PIL provider

* Fix concretization of pil

* Fix build of older versions of pillow
 2020-09-03 10:39:35 -07:00
Michael Kuhn
8c264a9f26
freetype: Add custom headers property (#18440) 
freetype's headers are installed in the `freetype2` subdirectory, use a
custom headers property to fix this in dependent packages.
 2020-09-03 11:32:41 -05:00
t-nojiri
3a562c0cec
fermi: added patch to support aarch64 (#18479) 2020-09-03 10:06:15 +02:00
psakievich
7c0b356e79
Add test tolerance variant to nalu-wind pkg (#18455) 
* Add test tolerance variant to nalu-wind pkg

* flake8 fixes
 2020-09-02 20:31:58 -05:00
Gabriel Rockefeller
ced0a8f068
eospac: add version 6.4.1 (#18476) 2020-09-02 20:28:48 -05:00
Andrew W Elble
879bb063f7
new package: corenlp (#18467) 
* new package: corenlp

* import os, not os.path
 2020-09-02 20:27:56 -05:00
Robert Blake
638f44d842
CUDA_HOME needs to be set, or CUDA is found based on user's PATH. (#18475) 2020-09-02 19:52:00 -05:00
Harmen Stoppels
6d87cbdb52
Add rocm 3.7.0 libs (#18366) 
* Add rocm 3.7.0 libs

* Make 3.7.0-only dependency on numactl explicit

* Add rocm-device-libs dep to rocm-clang-ocl

* Update the cmakelists dir in rocm-debug-agant

* Make rocm-debug-agent work on 3.7.0

* Disable tensile host; following rocm-arch recommendations
 2020-09-02 19:50:05 -05:00
Adam J. Stewart
443407cda5
Add new RubyPackage build system base class (#18199) 
* Add new RubyPackage build system base class

* Ruby: add spack external find support

* Add build tests for RubyPackage
 2020-09-02 16:26:36 -07:00
Chris White
e22a0ca5cf
mfem: fix transitive hdf5 static libs (#18457) 2020-09-02 15:06:45 -07:00
Adam J. Stewart
6b20687b26
python: switch to +uuid by default (#18252) 2020-09-02 14:46:58 -07:00
Jose E. Roman
601f97d8a5
New patch release SLEPc 3.13.4 (#18466) 2020-09-02 15:24:07 -05:00
Rémi Lacroix
447ea50bf9
Aria2: Add version 1.35.0. (#18465) 2020-09-02 15:23:40 -05:00
Adam J. Stewart
ba317b01c3
Packages: headers should be lists (#18445) 2020-09-02 13:19:22 -07:00
Nick Booher
0116c44714
ldak: new package at 5.1 (#18431) 
* ldak: new package at 5.1

* flake8

* Re-run tests

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-09-02 11:29:40 -05:00
Auriane R
24843844ae
Add HPX 1.5.0 release and update the homepage (#18464) 2020-09-02 10:34:05 -05:00
Sinan
e5fdb2a46c
new package: py-python-fmask (#18382) 
* new package: py-python-fmask

* flake8

* add missing dependency

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
 2020-09-02 10:29:02 -05:00
Sinan
712e7bd2bf
new package: py-gitdb (#18386) 
* new package: py-gitdb

* Update var/spack/repos/builtin/packages/py-gitdb/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-09-02 10:28:33 -05:00
Jordan Moxon
aa8e046073
Add blaze versions 3.6-3.8 (#18424) 2020-09-02 10:15:38 -05:00
darmac
f268f65733
Add new package: rasdaemon (#18434) 2020-09-02 10:08:34 -05:00
Gvozden Neskovic
1e05321c8f
gromacs: add support for opencl build (#18461) 
Co-authored-by: Gvozden Nešković <neskovic@dev06.compeng.uni-frankfurt.de>
 2020-09-02 09:07:43 -06:00
Seth R. Johnson
d904c57d2b
Flibcpp: update version (#18448) 
Update available versions and add Fortran check
 2020-09-02 11:07:10 -04:00
Paul
1b78a010d8
Updated Hugo package. (#18443) 
* Set GOPATH in build environment to avoid creating files in the user's
default GOPATH (e.g. ~/go).
* Support for external find.
* Added latest releease 0.74.3.
 2020-09-02 10:03:56 -05:00
ketsubouchi
1026ace6b6
r-boot: checksum mismatch @1.3-23 (#18458) 2020-09-02 10:00:12 -05:00
Weston Ortiz
bf2ded5269
Add gdb TUI variant (#18459) 2020-09-02 09:59:19 -05:00
Mark Olesen
5c94827201
scotch: update to 6.0.10 (released 31-AUG-2020) (#18462) 
- added gitlab location, updated the homepage location

Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
 2020-09-02 09:57:48 -05:00
Seth R. Johnson
9e51b8d165
New package: ForTrilinos (#18456) 
Remove prior built-in Trilinos subrepository.

Added a Trilinos conflict discovered while documenting ForTrilinos:
```
   ***
   *** ERROR: Setting Trilinos_ENABLE_SEACASExodus=OFF which was 'ON' because SEACASExodus has a required library dependence on disabled TPL Netcdf!
   ***
```
 2020-09-02 08:14:20 -04:00
Axel Huebl
0740a4ac7e
ADIOS: Fix no-MPI Build (#18453) 
Do not apply this patch in no-MPI builds. I think this autotools
check logic is generally borked, this will just set it manually to
on/off now.
 2020-09-01 18:17:51 -07:00
t-nojiri
ae3f3887a6
ccs-qcd: Change compile option for aarch64 (#17516) 
* ccs-qcd: Change compile option for aarch64
 2020-09-01 18:03:47 -07:00
Rao Garimella
ea97b37f60
Jali: Fix bugs in CMake section (#18447) 
Fix variant name and cmake variable.

Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
 2020-09-01 15:18:24 -04:00
Jen Herting
e7f1eeb7af
Update dependencies: py-torch-geometric (#18265) 
* [py-torch-geometric] depends on py-torch-sparse

* [py-torch-geometric] setting TORCH_CUDA_ARCH_LIST

* [py-torch-geometric] added the rest of the dependencies

* [py-torch-geometric] added cuda variant and added more build env vars

* [py-torch-geometric] added variant info for depenedencies

* [py-torch-geometric] flake8

* [py-torch-geometric] add variant description
 2020-09-01 13:44:12 -05:00
darmac
f9a330ae99
Add new package: efivar (#18392) 2020-09-01 10:09:59 -05:00
Nikolay Simakov
12078382b6
Added HPC Challenge Benchmark (#18323) 
* HPCC Benchmark: added HPC Challenge (HPCC) benchmark

* HPCC Benchmark: modified error message on lack of fftw2 interface in MKL

* hpcc: fixed styling add one more installation example

* hpcc: styling fix

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* hpcc: changed include and lib location setter

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* hpcc: fixed styling add one more installation example

* hpcc: removed readme.md

* hpcc: develop repo now is in github

* hpcc: march arguments are set explicitly in case of intel compilers, added -restrict flag, which needed for older intel compilers (at least <=19.0.5.281)

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-09-01 09:59:06 -05:00
ketsubouchi
3a5746c6c7
orbit2: new package at v2.14.19 (#18405) 2020-09-01 13:11:55 +02:00
darmac
3701633937
fuse-overlayfs: added new package at v1.1.2 (#18435) 2020-09-01 08:28:27 +02:00
Joseph Wang
ebeb8fb8df
ocaml: allow v4.08 and v4.09 to build with gcc10 (#18254) 
fixes #18228.  

This patch doesn't cover all old versions but it allows packages like whizard to build.
 2020-09-01 05:53:13 +02:00
Sinan
1c67a304c8
py-tpot: added new package at v0.11.5 (#18385) 
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-09-01 05:51:23 +02:00
Xavier Delaruelle
efff025787
environment-modules: added v4.5.3 (#18425) 2020-09-01 05:46:13 +02:00
Brian Van Essen
28ef5c0e27
dihydrogen, hydrogen: dependency on CUB is conditional on CUDA version (#18427) 
In CUDA 11, CUB is integrated into the CUDA library.
 2020-09-01 05:42:21 +02:00
Tim Haines
7926f84022
elfutils: add support for debuginfod (#18227) 2020-09-01 05:35:18 +02:00
Jeffrey Salmond
9b6c2e80fe
py-llvmlite: added v0.34 (#18432) 2020-09-01 05:33:27 +02:00
Toyohisa Kameyama
b2d2bb694e
openfoam: delete print to screen and updated docstrings/comments (#17985) 2020-09-01 05:31:49 +02:00
darmac
49b47864e9
libpam: added new package at v1.0.9 (#18418) 2020-09-01 05:19:48 +02:00
MichaelLaufer
16e3e28cc8
new package: wrf (#18398) 
* wrf: new package

* wrf: fix install dir

* wrf: ndown location

* Add more compiler and nesting options to wrf package

* Fix configure that didn't find pgf90, use tempfile and compile in parallel

* WRF v4.2 with parallel I/O support through pnetcdf

Signed-off-by: michael laufer <michael.laufer@toganetworks.com>

* extend Package, compiler wrapper now used, small fixes

Signed-off-by: michael laufer <michael.laufer@toganetworks.com>

* Update var/spack/repos/builtin/packages/wrf/package.py

fixed typo

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Levi Baber <baberlevi@gmail.com>
Co-authored-by: eXact lab <info@exact-lab.it>
Co-authored-by: michael laufer <michael.laufer@toganetworks.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-08-31 20:38:36 -05:00
Howard Pritchard
712d80955b
OPENMPI: add 4.0.5 (#18332) 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2020-08-31 20:38:06 -05:00
Julien Loiseau
2d718b56ca
Update package.py (#18426) 
Correct boost version to match flecsi
 2020-08-31 17:09:39 -06:00
Sinan
e7447f266a
new package: py-update-checker (#18396) 
* new package: py-update-checker

* add test deps

* Update var/spack/repos/builtin/packages/py-update-checker/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-update-checker/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-update-checker/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove lint stuff.

Co-authored-by: Sinan81 <Sinan81@earth>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-08-31 15:50:21 -05:00
Jen Herting
bc93632c06
New package: py-torch-sparse (#18270) 
* [py-torch-sparse] created template

* [py-torch-sparse] added dependencies

* [py-torch-sparse] extends py-torch-scatter

* [py-torch-sparse] added variant cuda and setting env vars

* [py-torch-sparse] added homepage and description. removed fixmes

* [py-torch-sparse] flake8

* [py-torch-sparse] added variant description

* [py-torch-sparse] extends -> depends on

* [py-torch-sparse] added dependencies of py-setuptools and py-pytest-runner
 2020-08-31 15:43:30 -05:00
Harmen Stoppels
7c9fe7bcbd
Add more cmake patch versions (#18422) 2020-08-31 10:52:18 -05:00
ketsubouchi
fc251e62d1
new package: dbus-glib (#18400) 2020-08-31 10:52:01 -05:00
darmac
3287050226
Add new package: dosfstools (#18410) 2020-08-31 10:49:50 -05:00
darmac
0d08071e95
Add new package: tesseract (#18411) 2020-08-31 10:49:05 -05:00
darmac
b2e1036316
Add new package: fipscheck (#18412) 2020-08-31 10:48:34 -05:00
darmac
1d54eb3fee
Add new package: libfuse (#18413) 2020-08-31 10:48:10 -05:00
darmac
7ba20239fb
Add new package: hardlink (#18414) 2020-08-31 10:47:46 -05:00
darmac
b8bf34b348
Add new package: libhbaapi (#18415) 2020-08-31 10:47:14 -05:00
darmac
ecc7f19177
Add new package: jimtcl (#18416) 2020-08-31 10:46:48 -05:00
Xavier Delaruelle
7036f41ea5
environment-modules: fix version 4.5.2 install (#18421) 
`configure` script of Modules 4.5.2 is a bit too strict and breaks when
special options like `--disable-dependency-tracking` are set. This issue
will be fixed on Modules project starting version 4.5.3
(cea-hpc/modules#354).

This change adapts `configure` options set when installing version 4.5.2
to avoid options unrecognized on this version.

Fix #18420
 2020-08-31 10:43:31 -05:00
Toyohisa Kameyama
97f7378097
neovim: build on aarch64 (#18136) 
* libvterm: renumber version and add 1.0.3
neovim: build on aarrch64

* Remove unneeded comment.

* libvterm:   newer bazaar snapshot version is set to version 0.0.
neovim: change for libvterm version change, and libtermkey version bug is fixed.

* update libvterm versions.
 2020-08-31 10:31:41 -05:00
darmac
c4e966f162
Add new package: byte-unixbench (#18257) 
* Add new package: byte-unixbench

* refine install flow

* Update var/spack/repos/builtin/packages/byte-unixbench/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-08-31 10:28:53 -05:00
t-nojiri
b0a1a7e9aa
cp2k: Add depend on libxc@4.3.4. (#18346) 
* cp2k: Add depend on libxc@4.3.4.

* cp2k: The fix of depend of libxc@4.3.4 was redone.
 2020-08-31 10:27:23 -05:00
Jen Herting
122a4719ca
New packages: py-torch-cluster (#18262) 
* [py-torch-cluster] created template

* [py-torch-cluster] added dependencies

* [py-torch-cluster] setting TORCH_CUDA_ARCH_LIST

* [py-torch-cluster] limited extends

* [py-torch-cluster] depends on scipy

* [py-torch-cluster] added variant cuda and set env vars

* [py-torch-cluster] added homepage and description. removed fixmes

* [py-torch-cluster] flake8

* [py-torch-cluster] switched to depends_on from extends.

* [py-torch-cluster] added variant description

* [py-torch-cluster] added py-setuptools and py-pytest-runner as dependencies
 2020-08-31 10:11:53 -05:00
Jen Herting
f659927938
New package: py-torch-scatter (#18263) 
* [py-torch-scatter] created template

* [py-torch-scatter] listed specific version of python

* [py-torch-scatter] extends py-torch

* [py-torch-scatter] setting TORCH_CUDA_ARCH_LIST

* [py-torch-scatter] setting more environemnt variables and added variant cuda

* [py-torch-scatter] added homepage and description. removed fixmes

* [py-torch-scatter] flake8

* [py-torch-scatter] Added variant description

* [py-torch-scatter] extends -> depends_on

* [py-torch-scatter] added dependencies of setup tools and pytest-runner
 2020-08-31 10:11:00 -05:00
Jen Herting
47ef8d9deb
New package: py-torch-spline-conv (#18273) 
* [py-torch-spline-conv] created template

* [py-torch-spline-conv] specified version of python

* [py-torch-spline-conv] extends py-torch-cluster

* [py-torch-spline-conv] setting TORCH_CUDA_ARCH_LIST

* [py-torch-spline-conv] limiting extension to py-torch

* [py-torch-spline-conv] added cuda variant and setting env vars

* [py-torch-spline-conv] added homepage and description. removed fixmes

* [py-torch-spline-conv] added variant cuda

* [py-torch-spline-conv] flake8

* [py-torch-spline-conv] added variant description

* [py-torch-spline-conv] extends -> depends_on

* [py-torch-spline-conv] added dependencies py-setuptools and py-pytorch-runner
 2020-08-31 10:10:21 -05:00
Adam J. Stewart
f4a37b2dc2
Remove unmatched triple quotes (#18272) 2020-08-31 13:05:07 +02:00
Weston Ortiz
86eac24f36
trilinos: added v13.0.0 and PYTHONPATH for exodus.py (#18266) 2020-08-31 12:56:37 +02:00
Dr. Christian Tacke
18fde34d38
singularity: added v3.6.2 (#18353) 2020-08-31 12:21:08 +02:00
Dr. Christian Tacke
c07204d661
glew: added v2.1.0 (#18394) 2020-08-31 11:48:46 +02:00
srekolam
d73db33005
atmi,rocgdb,rocm-dbgapi changes for rocm3.7 (#18404) 2020-08-31 11:36:38 +02:00
ketsubouchi
06ad858be2
libidl: added new package at v0.8.14 (#18403) 2020-08-31 11:34:11 +02:00
Sinan
3a0d273dae
py-py6s: added new package at v1.8.0 (#18407) 
Co-authored-by: Sinan81 <Sinan81@earth>
 2020-08-31 11:30:22 +02:00
h-denpo
55f490b093
lesstif: added dependency on 'libxext' (#18408) 2020-08-31 11:12:48 +02:00
darmac
1fdaffed3f
minizip: support minizip and miniunz building (#17925) 
* minizip: support minizip and miniunz building

* minizip: remove comment

* refine build flow
 2020-08-30 22:22:48 -05:00
Toyohisa Kameyama
7f9018e893
lua-luajit: remove duplicated lua-jit and merge to lua-luajit. (#18348) 2020-08-30 19:16:53 -05:00
Sinan
665e5ce0fd
new package: py-planet (#18377) 
* new package: py-planet

* flake8

* specify checksum type

* improve dependency specs

* specify dependency

* add test dependencies

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
 2020-08-30 10:45:17 -05:00
Sinan
06b551f98e
new package: py-deap (#18378) 
* new package: py-deap

* flake8

* fix sha sum

* add missing dependency

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
 2020-08-30 10:44:43 -05:00
Sinan
855e77036e
new package: py-pypeg2 (#18379) 
* new package: py-pypeg2

* add missing dependency

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
 2020-08-30 10:44:21 -05:00
Sinan
a43dc51551
new package: py-pysolar (#18380) 
* new package: py-pysolar

* latest version depends on python@3, flake8

* add missing dependencies

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
 2020-08-30 10:43:54 -05:00
Sinan
376d6119ce
new package: py-rios (#18381) 
* new package: py-rios

* flake8

* Update var/spack/repos/builtin/packages/py-rios/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-08-30 10:43:26 -05:00
Sinan
fc6cf29f0f
new package: py-ssmap (#18383) 
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
 2020-08-29 15:50:59 -05:00
Sinan
884e707810
new package: py-stopit (#18384) 
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
 2020-08-29 15:50:07 -05:00
vvolkl
a475ef20dd
[heppdt] fix broken url (#18388) 2020-08-29 15:43:27 -05:00
darmac
89df727e5f
Add new pacakge: termcap (#18389) 2020-08-29 15:42:51 -05:00
darmac
e9ea8d1e81
Add new package: wrk (#18390) 2020-08-29 15:42:19 -05:00
darmac
66e006608a
Add new package: cgdcbxd (#18391) 2020-08-29 15:41:52 -05:00
Wouter Deconinck
49df20f1ef
[libdrm] AutotoolsPackage; %gcc@10.0.0 requires CFLAGS=-fcommon (#18393) 
* [libdrm] AutotoolsPackage; %gcc@10.0.0 requires CFLAGS=-fcommon

* [libdrm] placate flake8
 2020-08-29 15:39:02 -05:00
darmac
586fbe05b5
Bcache (#18103) 
* bcache:add pkg-config to find blkid.h in linux-utils

* bcache: fix libuuid race condition in pkgconfig
 2020-08-29 11:54:46 -05:00
darmac
b4042f23d0
Add new package: re2 (#18302) 
* Add new package: re2

* re2: refine versions
 2020-08-29 11:53:29 -05:00
darmac
cf170b5ff1
Add new package: varnish-cache (#18258) 
* Add new package: varnish-cache

* Add dependency: python
 2020-08-29 11:52:09 -05:00
darmac
8b212c7845
Add new package: leptonica (#18306) 
* Add new package: leptonica

* Update var/spack/repos/builtin/packages/leptonica/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-08-29 11:51:41 -05:00
Christoph Junghans
2204ba18b5
flexiblas: initial add (#18364) 
* flexiblas: initial add

* Update package.py
 2020-08-29 09:48:48 -06:00
darmac
e58c7af1a3
Add new package: weighttp (#18255) 2020-08-28 23:12:56 -05:00
darmac
e19f971b7b
Add new package: librdkafka (#18256) 2020-08-28 23:12:32 -05:00
srekolam
6739908144
mathlibs- rocrand recipe for amd rocm-3.5.0 release (#18283) 
* mathlibs- rocrand recipe for amd rocm-3.5.0 release

* fixing review comments
 2020-08-28 23:11:46 -05:00
Andrew W Elble
4b649b2d2b
py-spacy: new version 2.3.2 (#18294) 
* py-spacy: new version 2.3.2

update en-core-web-sm to @2.3.1
add en-vectors-web-lg@2.3.0

* update deps

* wasabi

Co-authored-by: Andrew Elble <aweits@localhost.localdomain>
 2020-08-28 23:11:13 -05:00
Andrew W Elble
d08d0f2732
new package: qcachegrind@20.08.0 (#18295) 
Co-authored-by: Andrew Elble <aweits@localhost.localdomain>
 2020-08-28 23:10:58 -05:00
darmac
654f52bc08
Add new package: rinetd (#18303) 2020-08-28 23:06:04 -05:00
darmac
a206d2aebd
Add new package: rsyslog (#18304) 2020-08-28 23:05:30 -05:00
darmac
50d7467715
Add new package: tengine (#18305) 2020-08-28 23:04:48 -05:00
darmac
e09d906a35
Add new package: fastdb (#18308) 2020-08-28 23:03:30 -05:00
vvolkl
62128f1351
[whizard] update ocaml dependency (#18309) 
up
 2020-08-28 23:02:45 -05:00
darmac
2c155d4fe2
Add new package: sysbench (#18310) 2020-08-28 23:02:11 -05:00
darmac
d5da8e7543
Add new package: foundationdb (#18312) 2020-08-28 22:59:28 -05:00
darmac
eaf843c3e8
Add new package: pflask (#18313) 2020-08-28 22:58:54 -05:00
darmac
a1230d1910
Add new package: shc (#18314) 2020-08-28 22:58:29 -05:00
darmac
b799b983bb
Add new package: vsftpd (#18317) 2020-08-28 22:55:44 -05:00
darmac
0eeed1f7f7
Add new package: iniparser (#18318) 2020-08-28 22:53:57 -05:00
darmac
c85dc3a5b4
Add new package: fcgi (#18320) 2020-08-28 22:51:03 -05:00
darmac
6113be0919
Add new package: faust (#18321) 2020-08-28 22:50:05 -05:00
Kelly (KT) Thompson
48bfffd32c
[new version] Draco package (#18336) 
* Update version for package Draco

+ Add support for `draco-7.7.0`.
  + Introduces new `+cuda` variant.  This variant is only allowed in version
    `7.7.0:`.
  + Restrict `random123` to compatible versions.
  + Restrict `libquo` to compatible versions.
  + Moving forward, require `python@3:`
  + Moving forward, the ``+superlu_dist` variant is not longer supported.
+ Improve printed output for `--test` mode by adding `ctest` option
  `--output-on-failure`
+ Provide a patch to support for IBM Spectrum-MPI in version `7.7.0:`
+ Provide a patch to allow variant `~cuda` to actually disable GPU portions of
  the code when a GPU is discovered on the local system.

* Remove unnecessary function decoration.
 2020-08-28 22:42:15 -05:00
Chris Richardson
25021ec228
Add setuptools as a direct dependency (#18324) 2020-08-28 16:24:43 -05:00
Gabriel Rockefeller
8a408a6571
eospac: add versions 6.4.1alpha.2 and 6.4.1beta (#18329) 2020-08-28 16:23:30 -05:00
Rémi Lacroix
b27cd9d75d
NetCDF-Fortran: Add version 4.5.3. (#18350) 2020-08-28 16:22:42 -05:00
Robert Blake
eb8ff0bc81
Adding externals for bison and flex (#18358) 
* Adding externals for bison and flex

Added because bison actually pulls in a ton of stuff.

* Need to escape parentheses.

* Need to add re package.

* Adding re package.
 2020-08-28 16:22:28 -05:00
Robert Blake
aca370a3a2
External recognition for find. (#18360) 
* External recognition for find.

* Adding re package.
 2020-08-28 16:22:05 -05:00
Robert Blake
c9fd2983dc
texinfo: Adding external support (#18362) 
* texinfo: Adding external support for texinfo.

* Adding re package.
 2020-08-28 16:21:51 -05:00
Dr. Christian Tacke
65fda72d7c
davix: Improve shared library building on macOS (#18352) 
Add -DCMAKE_MACOSX_RPATH=ON to cmake.
 2020-08-28 16:13:53 -05:00
Keita Iwabuchi
9525c530d5
Add Metall v0.3 (#18340) 
* Metall: add version 0.2

* Add Metall v0.3
 2020-08-28 14:42:02 -05:00
Jonathan R. Madsen
0bf696a29d
Timemory: Fix python dependencies + NCCL (#18342) 
* Fix python dependencies + NCCL

* Removed trailing whitespace
 2020-08-28 14:40:34 -05:00
Dr. Christian Tacke
6bb2dd40b6
fairlogger: Update cmake options and version (#18354) 
* Add version 1.7.0 and 1.8.0
* Better support for boost < 1.70
* No color in output
 2020-08-28 14:31:09 -05:00
Nikolay Simakov
9b654fe60c
namd: added patching charmrun location, as it stored in prefix.bin (#18355) 2020-08-28 14:29:53 -05:00
Robert Blake
6ceb3d4be0
spectrum-mpi: external support, compiler detection (#18055) 
* spectrum-mpi: adding external support.

* Package is tested, works on LLNL lassen

* Spectrum external now detects the correct compiler

* Changing code to not output all compilers

Done per becker33's request on #18055
 2020-08-28 11:53:27 -07:00
eugeneswalker
9befc43708
binutils: add build dep: diffutils (provides cmp) (#18361) 2020-08-28 11:31:43 -07:00
Rémi Lacroix
b006123331
Add new package: AutoDock-GPU. (#17808) 
The project currently only has a develop branch and no versioned releases so only provide a git-based "develop" version.
 2020-08-28 11:02:52 -05:00
ketsubouchi
1d0650b2cb
looptools: skip UNDERSCORE check and add -Fwide (#18135) 2020-08-28 10:03:38 -05:00
ketsubouchi
abffcefadd
genometools: use signed char for %fj (#18126) 
* genometools: use signed char for %fj

* genometools: update patch to use int

* use int
 2020-08-28 10:02:42 -05:00
ketsubouchi
7dd58c7ed0
ghostscript: patched sources to allow building with Fujitsu compilers (#18345) 2020-08-28 11:52:11 +02:00
ajw1980
1251919318
Add type=link for libxml2 and libxslt for py-lxml (#18293) and add version 4.5.2 (#18325) 
Co-authored-by: Andy Wettstein <andy.wettstein@xrtrading.com>
 2020-08-27 15:03:23 -05:00
Hector
9f5d0c0007
Fix Zoltan installation with gcc 10.2.0 (#18301) 2020-08-27 20:57:53 +02:00
Andrew W Elble
77a28b81ac
thrift: add missing py-six dependency (#18285) 
* thrift: add missing py-six dependency

* add more missing dependencies (+extras)

* small fix

* gssapi variant / setuptools run dep

Co-authored-by: Andrew Elble <aweits@localhost.localdomain>
 2020-08-27 13:24:42 -05:00
psakievich
ccae9cff3a
Add nalu-wind test structure (#13640) 
- Add custom function to checkout submoudles if testing is enabled
 2020-08-27 12:09:56 -05:00
Chen Wang
680c1b339a
New version: Recorder 2.1.5 (#18327) 2020-08-27 11:55:04 -05:00
darmac
a81106757d
Add new package: libmnl (#18316) 2020-08-27 16:05:21 +02:00
Itaru Kitayama
1746799087
CUDA Toolkit: added v11.0.2 for Arm (#17845) 
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
 2020-08-27 14:56:18 +02:00
Chen Wang
9fc6bdabef
Add a new package: Recorder (#18297) 
* Add a new package: Recorder

* Delete all FIXMEs

* Update package.py

* Remove extra spaces.
 2020-08-27 07:47:21 -05:00
Simon Pintarelli
22329c4f92
sirius, q-e-sirius (#18286) 
* sirius: fix bug in shared spec

make +shared the default

* q-e-sirius: depend on sirius+shared, fix gcc@10

- add missing whitespace in -fallow-argument-mismatch.
- require sirius+shared
 2020-08-27 07:45:55 -05:00
Adam J. Stewart
7fd8f74c23
SLOCCount: add new package (#18271) 2020-08-27 14:39:46 +02:00
Seth R. Johnson
ba470137c8
nlohmann-json: added v3.9.1 and v3.8.0 (#18287) 
Also use 'define' helper function.
 2020-08-27 14:31:00 +02:00
Axel Huebl
a6c0b7ab3a
CMake: Update GCC on macOS Conflict message (#18253) 
* CMake 3.18.0+: Builds with GCC on macOS

The latest release of CMake updates libuv, which fixes ObjC code
usage on macOS. Passing ObjC code to non apple-clang compilers
crashed the build before.

Refs.:
- https://gitlab.kitware.com/cmake/cmake/-/issues/20620
- https://gitlab.kitware.com/cmake/cmake/-/merge_requests/4687

* CMake: Further issues GCC+macOS

There are further issues to fix before this will work.
https://gitlab.kitware.com/cmake/cmake/-/issues/21135
 2020-08-27 08:51:00 +02:00
darmac
5d3ad70e0a
Add new package: sysget (#18259) 2020-08-26 21:11:40 -05:00
Weston Ortiz
1a17921fa5
Add new package: sparse (#18264) 
* Add new package: sparse

* flake8 fixes
 2020-08-26 21:02:16 -05:00
Tom Payerle
273a158f1b
dbus: Add libsm dependency (fix for issue #18267) (#18268) 
dbus has a dependency on libSM which was not being declared (and would
normally be satisfied by using system libraries).
 2020-08-26 20:57:54 -05:00
Tim Haines
1536691bc9
caliper: Remove support for deprecated Dyninst versions (#18275) 2020-08-26 20:51:00 -05:00
darmac
080625c3af
Jpegoptim (#18279) 
* Add new package: jpegoptim

* refine homepage
 2020-08-26 20:49:34 -05:00
arjun-raj-kuppala
24f2850cab
update to rocm hip,hsa-rocr-dev,rocm-dbgapi (#18280) 
* update to rocm hip,hsa-rocr-dev,rocm-dbgapi

* Update var/spack/repos/builtin/packages/rocm-dbgapi/package.py

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2020-08-26 20:47:55 -05:00
darmac
b93e65065a
Add new package: libestr (#18281) 2020-08-26 20:45:51 -05:00
darmac
369e691ec2
Add new package: libfastjson (#18282) 2020-08-26 20:45:27 -05:00
Satish Balay
67e72bf1f5
sowing: update to version 1.1.26-p1 (#18298) 2020-08-26 20:17:05 -05:00
Seth R. Johnson
81bb372d75
Trilinos: Require parallel HDF5 when +hdf5+mpi (#17606) 
EpetraExt requires parallel IO. It does after all make sense to require
the parallel version of HDF5 when building a parallel solver library.
 2020-08-26 14:54:05 -05:00
Seth R. Johnson
26bab9d4d6
Fix build when +stratimikos +xpetra (#17971) 
If Thyra isn't explicitly enabled at the package level, trilinos fails
to build.

```
/var/folders/gy/mrg1ffts2h945qj9k29s1l1dvvmbqb/T/s3j/spack-stage/spack-stage-trilinos-12.18.1-vfmemkls4ncta6qoptm5s7bcmrxnjhnd/spack-src/packages/muelu/adapters/stratimikos/Thyra_XpetraLinearOp_def.hpp:167:15: error:
      no member named 'ThyraUtils' in namespace 'Xpetra'
      Xpetra::ThyraUtils<Scalar,LocalOrdinal,GlobalOrdinal,Node>::toXpetra(rcpFromRef(X_in), comm);
      ~~~~~~~~^
```
 2020-08-26 14:51:57 -05:00
ketsubouchi
02dc84a2b3
conduit: added patch to build with Fujitsu compilers (#18284) 2020-08-26 18:55:09 +02:00
eugeneswalker
f7d156af05
binutils: add version 2.35 (#18291) 2020-08-26 11:54:33 -05:00
Adam J. Stewart
20d37afafa
TensorFlow: added v2.3.0 (#17736) 
* Workaround for Spack-installed proto support

Co-authored-by: Andrew W Elble <aweits@rit.edu>
 2020-08-26 14:32:14 +02:00
Veselin Dobrev
ad437bff8f
[GnuTLS] Add gnutls-specific headers property. (#7259) 2020-08-25 19:00:49 -05:00
Christoph Junghans
afa907f549
kokkos: add v3.2.00 (#18274) 2020-08-25 15:26:43 -05:00
darmac
878d0b793c
Add new package: influxdb (#17909) 
* Add new package: influxdb

* put usr/* in prefix
 2020-08-25 07:45:30 -05:00
Axel Huebl
11a3ac25ac
CCache: added v3.7.11 and support for external detection (#18246) 2020-08-25 14:30:16 +02:00
lpoirel
b562154423
petsc: new version add support for +mumps +int64 (#18170) 
* petsc: new version add support for +mumps +int64

The latest petsc release allows using mumps while using 64 bit integers :
https://www.mcs.anl.gov/petsc/documentation/changes/313.html
https://gitlab.com/petsc/petsc/-/merge_requests/2591/

* petsc: use conflicts for mumps dependency
 2020-08-25 14:07:59 +02:00
Adam J. Stewart
b305990ee8
pkgconfig: add conflict for PGI (#18236) 2020-08-25 11:33:36 +02:00
Tim Haines
9b07669ab3
libmicrohttpd: added new package at v0.9.71 (#18226) 2020-08-25 10:24:04 +02:00
Adam J. Stewart
df51cf20c5
libtiff: added v4.1.0 (#18247) 2020-08-25 10:00:56 +02:00
Adam J. Stewart
cb322300cb
libgeotiff: added v1.6.0 (#18248) 2020-08-25 10:00:39 +02:00
Adam J. Stewart
5aef9f8f83
PROJ: added versions up to v7.1.0 (#18249) 2020-08-25 10:00:18 +02:00
Adam J. Stewart
c6736653cd
py-shapely: added v1.7.1 (#18250) 2020-08-25 09:59:36 +02:00
Adam J. Stewart
d4ef804b15
py-cartopy: added v0.18.0 (#18251) 2020-08-25 09:59:12 +02:00
Tim Haines
eebcd6b24f
Dyninst: added conflicts for unsupported compilers and platforms (#18245) 2020-08-25 09:56:27 +02:00
Joseph Wang
ac6d7dcdf6
freeglut: added v3.2.1 and patch to build with GCC 10 (#18229) 2020-08-25 09:53:27 +02:00
Elizabeth Fischer
c13bc308db
py-basemap: Update for proj@6 (#16183) 
* py-basemap

* Updated versions + URL attribute

* Update var/spack/repos/builtin/packages/py-basemap/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-basemap/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Removed unnecssary comment

* flake8

Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-08-24 23:24:56 -05:00
Robert Blake
5e1909c00a
mvapich2: Adding external find support. (#18177) 
* Adding external support for mvapich2.

This picks up all the options that are currently settable by
the spack package. It also detects the compiler and sets it
appropriately.

* Removing debugging printing.

* Adding changes suggested by @nithintsk
 2020-08-24 20:53:42 -05:00
Satish Balay
b885dbcd85
pflotran: requires hdf5+hl (#18224) 2020-08-24 19:13:47 -05:00
Paul
9e7029d806
Added Go 1.15 and find external package. (#18235) 2020-08-24 19:05:48 -05:00
Robert Underwood
6f2f02366a
sz: version bump, cmake bug-fix, add maintainer (#18238) 
+ Added version 2.1.9
+ Previously the SZ package incorrectly depended on CMake without a
  version dependancy, but actually version 3.13 or newer is required
+ Added myself as a maintainer for the SZ spack package
 2020-08-24 19:05:08 -05:00
Benjamin Tovar
d6ca3be63a
Update to CCTools 7.1.7 (#18241) 
This is a bug release with some new features and bug fixes. Among them:

[Batch] Set number of MPI processes for SLURM. (Ben Tovar)
[General] Use the right signature when overriding gettimeofday. (Tim
Shaffer)
[Resource Monitor] Add context-switch count to final summary. (Ben
Tovar)
[Resource Monitor] Fix kbps to Mbps typo in final summary. (Ben Tovar)
[WorkQueue] Update example apps to python3. (Douglas Thain)
 2020-08-24 19:04:08 -05:00
Axel Huebl
a483b0b9dd
CMake: 3.18.2 (#18244) 
Adds the latest CMake release, which fixes a Spectrum-MPI + CUDA<10.2
issue, among others. Relevant for Summit.
 2020-08-24 19:03:11 -05:00
Adam J. Stewart
5ef7d5e792
CUDA: add v10.1.243 for ppc64le (#18237) 
Closes #18174 

@smarocchi @ax3l @svenevs 

The error message in #18174 isn't great, but I'm hoping that #18127 will improve that.
 2020-08-24 14:50:10 -07:00
Daryl W. Grunau
f5102cd582
call the universal 'mpifc' instead of hardcode 'mpif90' (#18162) 
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
 2020-08-24 15:44:20 -05:00
Harmen Stoppels
17f7d9f44c
openmpi: fix concretization (#18233) 2020-08-24 19:05:39 +02:00
Erik Schnetter
53cfca1f59
simulatioion: Declare dependency on asdf-cxx (#18018) 
* simulationio: Declare dependency on asdf-cxx

* Rename "develop" to master"; add descriptions to variants

* Add maintainer
 2020-08-24 11:25:43 -05:00
David Gardner
3c866294e1
add github url as backup (#18223) 2020-08-23 16:43:57 -05:00
t-nojiri
b721a2e54b
soapdenovo-trans: build on aarch64 (#18187) 
* samtools: Add version 0.1.8 for OSS soapdenovo-trans.

* Add depend on zlib and samtools to build on aarch64.

* soapdenovo-trans: Change the condition of depend on zlib and samtools.
 2020-08-22 22:11:19 -05:00
David Gardner
a6ca236c26
add tcl 6.8.10 (#18221) 2020-08-22 22:02:57 -05:00
Sergey Kosukhin
b5e78bce06
OpenMPI: sanitize dependent build environment. (#15360) 2020-08-22 22:01:41 -05:00
Sergey Kosukhin
9fdb945383
NetCDF: fix constraints. (#16719) 2020-08-22 16:06:17 -05:00
Teodor Nikolov
dc5176fbae
[hpx] Two new variants for upcoming v1.5, stable and master (#18022) 
* New package: cxxopts

* Use +unicode instead of unicode=True

- Make the unicode option more explicit

* Add two new variants to spack for upcoming 1.5, stable and develop

* Add as maintainer

* Add depends_on on clauses

* Remove unrelated change
 2020-08-22 16:00:11 -05:00
Carson Woods
c743d219aa
qthreads: add additional configuration options (#15833) 
* Add new config options for qthreads

* Fix syntax error and add option for specifying stack size

* Fix flake8 issues

* Add input validation for the stack size variant and add explicit enable for spawn cache

* Fix flake8 issues with input validation code
 2020-08-22 15:58:41 -05:00
Jianwen
e26e532eb3
vifi: a new package. [WIP] (#14287) 
* vifi: a new package.

* Fix url.

* Add dependencies.
 2020-08-22 15:23:04 -05:00
noguchi-k
15facf2171
ibm-java: add conflicts for aarch64 (#13728) 2020-08-22 15:22:50 -05:00
Ruben Di Battista
f902202b5e
Add scantailor package (#12833) 
* Add scantailor

* qt: Fix build w/ GCC9 for @4:

* qt: Fix patch filename and qt version

* Fix typo in patch name

* scantailor: Fix version

* scantailor: Use a more-modern fork

* scantailor: Remove unused patch file

Co-authored-by: Ruben Di Battista <ruben.di-battista@polytechnique.edu>
 2020-08-22 15:22:37 -05:00
Andreas Baumbach
27b9727926
Add new package arbor (#11914) 
* Add new package arbor

Change-Id: I70a442d6ad74979d13bd9f599df238c085d4baf9

* Update package.py

* add additional dependencies

* change download to tar-ball

* py26 compatibility

* restrict noqas and expand comment

Co-authored-by: Eric Müller <mueller@kip.uni-heidelberg.de>
 2020-08-22 14:42:46 -05:00
Brian Homerding
2e2c06121a
llvm-openmp-ompt: Additional dependencies and adding variant (#11266) 
* llvm-openmp-ompt: Additional dependencies and adding variant for disabling building libomptarget

* Flake8 fixes
 2020-08-22 14:23:04 -05:00
Levi Baber
d65b9ad195
mark: added new package (#10513) 
* mark: Create new package.

* mark: change description.

* mark: change description.

* mark: Delete set_up environment.

* mark: replace join_path(prefix.bin, mark) with prefix.bin.mark

* mark: new license and sha256 hash

Co-authored-by: lingnanyuan <1297162327@qq.com>
 2020-08-22 14:01:00 -05:00
Elizabeth Fischer
8ce5718922
qgis: Updates for proj@6 (#16172) 
* qgis

* Update package.py

QGIS 3.12.1 can use PROJ >= 4.9.3.  Therefore both version restrictions on PROJ were incorrect.
https://github.com/qgis/QGIS/blob/final-3_12_1/INSTALL

* Update package.py

Add explanation to (hopefully temporary) removal of hdf5 dependency.

* Remove overly restrictive GRASS version number.

* flake8

Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
 2020-08-22 13:22:57 -05:00
Erik Schnetter
488d8ae747
openmpi: Update hwloc version bounds (#18040) 
`openmpi @4:` can use `hwloc @2:`.
 2020-08-22 13:10:11 -05:00
Christoph Junghans
adc98ae409
votca*: add v1.6.2 (#18218) 2020-08-22 11:38:41 -06:00
darmac
74d274f02f
Add new package: consul (#18044) 
* Add new package: consul

* fix package type

* refine install phase
 2020-08-22 10:51:20 -05:00
srekolam
febc8ccb15
new recipe for rocalution and fix for rocm-smi-lib (#18211) 2020-08-21 13:34:06 -05:00
Jen Herting
512aa40151
[py-numba] added version 0.50.1 (#17880) 
* [py-numba] fixing upper limit for conditional dependency

* [py-numba] added version 0.50.1

* [py-numba] Specifying llvmlite version for new version
 2020-08-21 12:45:57 -05:00
Jen Herting
c24b838407
[py-llvmlite] new version 0.33.0 (#17878) 
* [py-llvmlite] new version 0.33.0

* [py-llvmlite] newer version of python required
 2020-08-21 10:54:06 -05:00
g-mathias
d222551185
namd: latest version 2.14 (#18167) 
* upgrade to version 2.14; added target architecture optimization

* renamed devel-> (adamjstuart); keep 2.14bx versions

Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
 2020-08-21 09:55:53 -05:00
Adam J. Stewart
07fc495c94
py-pandas: added v1.1.1 (#18206) 2020-08-21 08:49:32 +02:00
Ryan Mast
3a1334bc6a
helics: Add version 2.6.0 (#18208) 
* helics: Add version 2.6.0

* Remove bms version from HELICS package
 2020-08-20 22:24:46 -05:00
Jordan Ogas
1666db60d0
charliecloud: add 0.18 (#18200) 
* add 0.18, remove older versions

* update url

* fix typo
 2020-08-20 20:16:34 -05:00
Michael Kuhn
fc3b4657ce
sqlite: Add 3.33.0 (#18145) 2020-08-20 17:17:02 -05:00
g-mathias
880ff1d795
new dakota version 6.12; included boost versions limit; changed default url (#18168) 
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
 2020-08-20 17:14:40 -05:00
vvolkl
6b6f6db431
[gaudi] sadly, the cmake fixes are postponed to next version (#18171) 2020-08-20 17:11:45 -05:00
vvolkl
cd06100001
[podio] new version, cxxstd 17 now mandatory (#18191) 2020-08-20 17:06:52 -05:00
Harmen Stoppels
ebe5a5652c
Add rocSPARSE, rocSOLVER, hipSPARSE and hipBLAS (#18108) 2020-08-20 14:55:02 -05:00
Massimiliano Culpo
573ce3fe81
gcc: fixed compilation on OpenSUSE (#18190) 
Set location for dependencies specifying explicitly both
the include and lib path. This permits to handle cases where
the libraries are installed in lib64 instead of lib.

fixes #17556
fixes #10842
closes #18150
 2020-08-20 17:42:18 +02:00
Marc Mengel
d5c3b876e0
detatch binutils usage from bootstrap in gcc variants (#18116) 2020-08-20 17:06:22 +02:00
vvolkl
286c3d6cbc
[lcio] set up run time paths (#18109) 
* [lcio] set up run time paths

* [lcio] update runtime

* [lcio] flake8
 2020-08-20 09:43:59 -05:00
Isaac Whitfield
b9adbac5c6
libimobiledevice: new package (#10819) 2020-08-20 11:22:04 +02:00
ketsubouchi
8a02ef4d51
bwa: patch Makefile to permit the use of compilers other than GCC (#18189) 2020-08-20 09:55:05 +02:00
Tim Haines
c786eb46bb
dyninst: use elfutils for all versions (#18063) 2020-08-20 08:36:02 +02:00
Elizabeth Fischer
306f3a1232
Make finding of NetCDF and HDF5 more explicit. (#18166) 
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
 2020-08-20 08:34:53 +02:00
darmac
1650824ef5
Add new package: phoenix (#18143) 2020-08-19 20:33:37 -05:00
darmac
0187884591
qemu: add pkgconfig to avoid build error (#17929) 2020-08-19 20:32:47 -05:00
darmac
d9722e2730
nfs-ganesha: fix compile error on debian (#18102) 
* nfs-ganesha: fix compile error on debian

* add type for py-stsci-distutils
 2020-08-19 20:32:02 -05:00
darmac
bc2ff81a64
Add new package: presto (#18142) 2020-08-19 20:31:10 -05:00
darmac
472a32fb41
brigand: fix build error (#18173) 2020-08-19 20:30:33 -05:00
eugeneswalker
b5db5cf259
prepend ${NINJA_ROOT}/misc to PYTHONPATH in run environment (#18182) 2020-08-19 15:06:08 -07:00
Filippo Spiga
8e8071ffb6
[WIP] Adding Quantum ESPRESSO v6.6 (#18091) 
* Adding v6.6 (latest stable)

* There is no '-' in Quantum ESPRESSO

Co-authored-by: Filippo Spiga <fspiga@nvidia.com>
 2020-08-19 11:10:54 -05:00
Pieter Ghysels
2945babdad
STRUMPACK: added v4.0.0 (#18159) 
- add cuda variant, enabled by default, but conflicting with
  strumpack@:3.9.999
- add zfp variant, enabled by default, but conflicting with
  strumpack@:3.9.999
- update minimum CMake version to 3.11
- for version 4.0.0:, do not use mpi wrappers. v4.0.0 uses CMake
  MPI targets
- for version 4.0.0, add dependency on butterflypack@1.2.0:
- remove versions 3.1.0 and older
- make parmetis variant True by default
- add TODO for slate variant (spack package not ready yet)
 2020-08-19 10:15:02 +02:00
Kai Germaschewski
3cbd4c8dcf
adios: relax libtool restriction (#18056) 
While I believe there must have been a reason to restrict libtool to <=
2.4.2, adios compiles just fine with libtool 2.4.6 for me.

In fact, without this change, I'm getting this error:

libtool: Version mismatch error.  This is libtool 2.4.6, but the
libtool: definition of this LT_INIT comes from libtool 2.4.2.
libtool: You should recreate aclocal.m4 with macros from libtool 2.4.6

This doesn't make much sense, since spack did build libtool@2.4.2 as a
dependency, and was supposedly trying to use it. My guess is that on
this system (NERSC's cori) the system libtool in /usr/bin, which is
2.4.6 somehow got picked up partially.
 2020-08-19 08:49:54 +02:00
Michael Kuhn
fd0d79ecc5
meson: added v0.55.1 (#18146) 2020-08-19 08:32:13 +02:00
Luke Dalessandro
76f3d84a1b
libfabric: added v1.10.0, v1.10.1 and v1.11.0. (#18161) 2020-08-19 08:26:22 +02:00
Robert Pavel
bc34ab4701
lua: specified better the dependency on ncurses (needs +termlib) (#18163) 
Semi-recently the lua spackage was updated to explicitly add libtinfow
to the lua build line. Ncurses provides this but only when the +termlib
variant is enabled
 2020-08-19 08:23:56 +02:00
Massimiliano Culpo
bef560636d
intel: added external detection capabilities (#17991) 2020-08-19 08:20:57 +02:00
ketsubouchi
71748a3b7a
moab: delete -march=native from generated files (#18137) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2020-08-19 07:40:40 +02:00