Commit graph

6954 commits

Author SHA1 Message Date
Justin Stanley
553cecaade r-manipulatewidget: new package at 0.10.0 (#9826) 2018-11-12 18:41:03 -06:00
Justin Stanley
2ee0d98be1 r-webshot: new package at 0.5.1 (#9824) 2018-11-12 18:38:48 -06:00
Levi Baber
dcb696bd3f r-callr: adding new dependencies (#9730) 2018-11-12 18:38:03 -06:00
Justin Stanley
5ed3873f2f r-convevol: new package at 1.3 (#9767) 2018-11-12 18:36:31 -06:00
Justin Stanley
8357c1e0bc r-miniui: new package at 0.1.1.1 (#9823) 2018-11-12 18:34:56 -06:00
Justin Stanley
407bfbc2cb r-clustergeneration: new package at 1.3.4 (#9765) 2018-11-12 18:34:03 -06:00
Jim Galarowicz
5dc0b65719 Update Dyninst package file for TBB dependency (#9728)
* Update Dyninst package file for TBB dependency

Dyninst master and 10.0 release
versions require the tbb package.  This mod
updates the tbb versions adding the one that
dyninst uses and adds the required spack package
changes to dyninst/package.py.

* Put new version of tbb in proper location, per reviewer comment.

* Only depend on tbb if building the development version.

* Changes for the release of Dyninst 10.0.0
2018-11-09 13:35:11 -08:00
Nichols A. Romero
236b34f3df Introduce fftw-api virtual package for Intel-MKL and FFTW (#9618)
* Introduce FFTW2 and FFT3 providers for Intel-MKL and FFTW Spack packages.

* make fftw default package for fftw-api virtual package

* virtual package test assertion now provides location of default virtual packages.

* Change name of virtual package to fftw-api and used versioned interface.
2018-11-09 08:16:11 -08:00
Todd Gamblin
0e60fcccfb utils: merge spack.environment into spack.util.environment
- `spack.util.environment` is the new home for routines that modify
  environment variables.

- This is to make room for `spack.environment` to contain new routines
  for dealing with spack environments
2018-11-09 00:31:24 -08:00
Justin Stanley
d1b17e8207 canu: use built-in makefile install (#9726) 2018-11-08 10:28:10 +01:00
Denis Davydov
8f4d6caf32 muparser: minor fixes to 2.2.5 and add 2.2.6 with CMake (#9724)
* muparser: minor fixes to 2.2.5 and add 2.2.6 with CMake
* dealii: make muparser optional
2018-11-08 10:05:52 +01:00
Michael Kuhn
da193a07a3 ncl: Add 6.5.0 (#9736) 2018-11-08 10:03:29 +01:00
Levi Baber
55b6105af7
r-delayedarray: new dep in latest vers (#9731) 2018-11-07 10:27:08 -06:00
Valentin Clement (バレンタイン クレメン)
768111c365 Use the raw compiler path for the preprocessing pass in CLAW driver (#9748) 2018-11-07 15:24:24 +01:00
Peter Scheibel
7d97e8b067 New repo for advanced packaging tutorial (#9711)
* modified tutorial packages

* update hint in hdf5 tutorial file (typo for suggested argument)

* add repo.yaml to tutorial repository

* update tutorial docs to refer user to tutorial package repository

* flake edits

* recommend site scope vs. defaults

* you don't specify the repo's name when adding a repo, just the path
2018-11-06 19:57:32 -08:00
Levi Baber
4ba3c81bc8
snpeff: add wrapper for SnpSift.jar (#9674) 2018-11-06 08:36:47 -06:00
sknigh
d5327d8d4b Add OpenMPI 3.1.3 and a bug patch (#9680) 2018-11-06 09:12:48 +01:00
Gregory Lee
e6eb2b960e py-backports-functools-lru-cache: add to 'backports' namespace (#9720) 2018-11-05 16:01:03 -08:00
Justin Stanley
d7c9128875 new package: homer (starting at 4.9.1) (#9669) 2018-11-02 18:18:05 -07:00
Eric
b471a3626e freetype: enable-freetype-config build option for 2.9.1 (#9653)
This builds the 'freetype-config' binary which can be used to get
configuration information about the freetype install, used by some
dependents.
2018-11-02 18:06:40 -07:00
Tim Law
a33d123e2e Add version 2.0.2 of BookLeaf_Cpp and version 3.0.2 of Typhon. (#9662) 2018-11-02 13:30:52 -07:00
Dmitriy
36ddcc2e97 henson: new package (#9657)
* henson: new package

* henson: change github path to henson-insitu

* henson: make mpi-wrappers=off by default

* henson: remove unsued variable and spaces to make linter happy

* henson: rename version master to develop
2018-11-01 18:15:12 +01:00
Thomas Stitt
6a3552274f xeus: new package (#9682)
* xeus: new package
cppzmq: add version 4.3.0
zeromq: make libsodium optional, on by default

* xeus: add patch so it builds, add new version
nlohmann-json: add more versions
cryptopp: add more versions

* xeus: flake8

* xeus: fix license
2018-10-31 20:23:44 -07:00
Abhinav Bhatele
939ce40032 ecp-proxy-apps: disable building CANDLE Benchmarks by default (#9691)
add as a variant
2018-10-31 12:50:37 -06:00
Federico Ficarelli
383cda2c90 lbzip2: add new package (#9688) 2018-10-31 18:08:00 +01:00
Kelly (KT) Thompson
a3ff21eb2b Provide a newer doxygen version. (#9681)
* Provide a newer doxygen version.

+ Also provide a patch that allows collaboration diagrams to work properly with
  C++ std::shared_ptr<T>. Ref:
  6c380ba91a
2018-10-31 18:03:13 +01:00
健美猞猁
79e70afed4 Packmol: a new package. (#9687) 2018-10-31 17:32:09 +01:00
Justin Stanley
abad2c9743 r-dismo: new package starting at 1.1-4 (#9675) 2018-10-31 11:28:09 +01:00
Jim Galarowicz
c10d432a2e Update openspeedshop and cbtf-krell module creation code (#9234)
* Add the setting of CBTF_MPI_IMPLEMENTATION to the cbtf-krell
  and openspeeedshop package files, so that the mpi implementation
  can be found by the tool.  This allows users to not have to
  set this manually if only one mpi implementation is specified
  in the build.
* Update version ranges for dependencies of cbtf packages
2018-10-30 18:41:08 -07:00
Ross Miller
718be8a645 Update dependencies for py-llvmlite (#9668)
Change dependency on llvm from >=6.0 to 6.0:6.99.

Refs #9667
2018-10-30 21:33:43 +01:00
Alberto Chiusole
f602fd8ea4 New package: RegCM, regional climate model. (#9655) 2018-10-30 13:32:59 -07:00
Axel Huebl
33b65ecca0 GCC: ISL and mpfr upper bounds (#9513)
* GCC: constrain version 6, 7, and 8 to build with ISL version at
  most 0.18
* GCC version 9 (not yet released) will be compatible with
  ISL version 0.20 so future GCC releases are constrained to build
  with ISL version at most 0.20
* ISL: Add v0.15, replace all md5 sums with sha256 sums for ISL
  versions
* GCC versions before 6 were constrained to build with ISL 0.14
  but have been confirmed to work with ISL 0.15
* GCC: Place an upper bound on GCC's mpfr dependency
2018-10-30 13:26:41 -07:00
Ruben Di Battista
3c387bfa39 vtk: remove redundant option setting (#9597)
This eliminates duplicates for a couple options which are set
multiple times.
2018-10-30 12:47:48 -07:00
Abhinav Bhatele
26bacbcb8c caliper: specify path to libunwind (#9670) 2018-10-30 18:37:44 +01:00
Dave
be48d41ab1 warpx: Fixes for building on NERSC (#9671) 2018-10-30 18:25:32 +01:00
jthies
38a1732c5a Jthies/xsdk add phist (#8980)
* packages/phist: add variant 'fortran' to enable/disable building the Fortran bindings

* xsdk: add phist

* packages/xsdk: add a comment reg. updating phist dependency

* packages/phist: +fortran variant is only for versions 1.7:

* packages/phist: update comments

* xsdk: forgot to specify kernel library for phist (picked tpetra, assuming trilinos+tpetra will be installed)

* packages/phist: add variant 'openmp' to allow disabling OpenMP

* phist: fix compile error due to missing -lm

* flake8: fix warnings

* packages/phist: fix cmake flag: XSDK_ENABLE_Fortran (rather than XSDK_BUILD_Fortran)

* packages/phist: allow disabling building the scamac matrix generator (which causes trouble on some systems)

* packages/xsdk: disable scamac within phist because it caused problems for @balay and is not essential for now

* packages/phist: actually disable scamac via cmake if ~scamac

* phist: disable openmp from xsdk
2018-10-30 08:12:15 -05:00
jthies
930d6af815 packages/phist: new version 1.7.3 (#9672) 2018-10-30 11:13:11 +01:00
Dan Han
2209d571ea R rjags - new version (#9568)
* REMOVED: -callr: updated to newest version, added sha256, added listurl

* r-rjags: updated

* r-rjags: fix new version
2018-10-29 16:12:20 -05:00
snehring
1e54a42cc9 hoomd-blue: fixing issue during build with newer cmakes (#9543)
* Constrain to build with CMake <= 3.9.6
* Specify installation prefix to match install prefix format of
  other Spack python libraries
2018-10-29 13:46:35 -07:00
Satish Balay
8d4c15e0bd
strumpack: update to version 3.1.1 (#9666) 2018-10-29 15:34:14 -05:00
Satish Balay
6eef6a1d77
slepc: update to version 3.10.1 (#9665) 2018-10-29 15:33:50 -05:00
Miles Perry
2bd453c4a7 add package Feature/sentieon (#9557)
* added package sentieon

* change file location

* updated spack header license and added license_vars

* fixed flake8 error

* fixed license header

* fix license header

* license

* added import os.path

* edits

* flake8 edits
2018-10-29 15:02:27 -05:00
Justin Stanley
c46a39179b orca: new package starting at 4.0.1.2 (#9297)
* orca: new package starting at 4.0.1.2

* orca: fix typo

* orca: fix boilerplate

* orca: reorder deps, add openmpi runtime dependency

* orca: license update
2018-10-29 14:49:58 -05:00
David Wells
c96c38a08f Expand the libMesh dependency list (#9642)
This commit overhauls the libMesh package script in a number of ways:

* We now inherit from AutotoolsPackage.
* libMesh contains about a dozen third-party dependencies that can
  only be provided by the copy bundled with libMesh. This  patch
  enumerates all such bundled dependencies and disables all of them
  by default.
* libMesh supports compilation with external installations of boost,
  eigen, hdf5, slepc, and tbb; this patch adds all of them to
  package.py.
* libMesh will look for a few system executables (xz, bzip, gdb) by
  default. This is now disabled.
* libMesh will now used a copy of perl installed by spack instead of
  trying to find the system copy.
* Compilation with non-system MPI installations requires an additional
  flag (--with-mpi=); this has been added.
2018-10-29 11:50:43 -07:00
Dmitriy
be5c92f7cd diy: new package (#9628) 2018-10-29 10:20:46 +01:00
Denis Davydov
23726617ba Updated octave and gnuplot versions (#9660)
* octave: add 4.2.2, 4.4.0 and 4.4.1
* gnuplot: add 5.2.5
2018-10-29 09:32:30 +01:00
Denis Davydov
d191cb0102 pyfypp: add setuptools build dependency (#9650) 2018-10-26 19:41:10 -07:00
dorier
c8092b3ab7 damaris: add support for VisIt and Catalyst (#9651) 2018-10-26 19:40:25 -07:00
Justin Stanley
91aed716f9 new package: phyluce (starting at 1.6.7) (#9633) 2018-10-26 19:33:32 -07:00
dorier
13e5c3fbe2 VisIt: build vtk without mpi support (#9649)
VisIt cannot use VTK built with mpi support (which was enabled by
default starting in #9494)
2018-10-26 19:01:39 -07:00