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Author SHA1 Message Date
Todd Gamblin
674434b0fc Merge branch 'UCL-RITS-hash_stability' into bugfix/hash-collision 2016-09-02 03:03:25 -07:00
Todd Gamblin
9268b7aa7c Fix hash copying in _dup. 
- Spec._dup() incorrectly copied cached hashes and normal/concrete values
  even when dependency structure was not preserved.

- Now these are only copied when *all* dependencies are copied.
 2016-09-02 01:26:19 -07:00
Todd Gamblin
69d45b49e9 Fix hash handling in directory layout 
- Currently, build dependencies are not currently hashed; we are waiting
  to hash these until we have smarter concretization that can reuse more
  installed specs.  The layout needs to account for this when checking
  whethert things are installed.
 2016-09-02 01:26:01 -07:00
Todd Gamblin
f5bc0cbb65 Merge pull request #1535 from LLNL/bugfix/faster-install-db-gh1521 
[WIP] Faster database loading, faster in-memory hashing
 2016-09-01 13:00:21 -07:00
Todd Gamblin
8d755c010d Merge pull request #1658 from LLNL/features/git-lfs 
Add git-lfs package.
 2016-09-01 11:58:18 -07:00
Todd Gamblin
0f26bb9e92 Merge pull request #1688 from LLNL/bugfix/database-issues 
Fix dependency bug with `spack reindex`.
 2016-09-01 11:39:21 -07:00
Todd Gamblin
69b68153a1 Fix spack reindex so that it will work if DB is corrupt (duh). 
- Transaction logic had gotten complicated -- DB would not reindex when
  corrupt, rather the error would be reported (ugh).

- DB will now print the error and force a rebuild when errors are
  detected reading the old databse.
 2016-09-01 11:29:32 -07:00
Todd Gamblin
bee5c05568 Update tests to reflect new in-memory hashing vs. coarser dag_hash. 
- Spack currently not hashing build deps (to allow more reuse of packages
  and less frequent re-installing)

- Fast in-memory hash should still hash *all* deptypes, and installed
  specs will only reflect link and run deps.

- We'll revert this when we can concretize more liberally based on what
  is already installed.
 2016-09-01 11:29:32 -07:00
Todd Gamblin
235a045d08 Add option to copy only certain deptypes to Spec.copy() 
- can now pass these to Spec.copy() and Spec._dup():
  - deps=True
  - deps=False
  - deps=(list of deptypes)

- Makes it easy to filter out only part of a spec.
 2016-09-01 11:29:32 -07:00
Todd Gamblin
409e7a2e64 Faster database loading. 
- use a 3-pass algorithm to load the installed package DAG.

- avoid redundant hashing/comparing on load.
 2016-09-01 11:29:32 -07:00
Todd Gamblin
a8aad95d41 Specs now cache result of "fast" in-memory hash. 
- Hash causes major slowdown for reading/setting up large DBs

- New version caches hash for concrete specs, which includes all specs in
  the install DB
 2016-09-01 11:29:32 -07:00
Todd Gamblin
c46a15b574 Fix dependency bug in database. Fixes #1265, #1320. 2016-09-01 11:25:01 -07:00
Todd Gamblin
4a87d4ab8e Make gh-pages redirect to readthedocs.io 2016-08-31 19:40:22 -07:00
Todd Gamblin
bf8413379f Merge pull request #1593 from eschnett/eschnett/depends_on 
Expand/clarify description of dependency types
 2016-08-31 12:07:11 -07:00
Erik Schnetter
efc570afab Expand/clarify description of dependency types 2016-08-31 14:42:32 -04:00
Todd Gamblin
e3c182a1c4 Merge pull request #1677 from eschnett/eschnett/lzo-hotfix 
Switch lzo download from https to http
 2016-08-31 09:43:16 -07:00
Erik Schnetter
932cd6fa19 Switch lzo download from https to http 
lzo's download server does not present a valid certificate, so that downloads via https are failing. Spack's MD5 checksum still ensure a safe download.

Closes #1675.
 2016-08-31 12:41:04 -04:00
Todd Gamblin
0ff048521b Fix modules.rst doc build warning. 2016-08-30 22:15:13 -07:00
Todd Gamblin
8709e1c1c3 Move docs to readthedocs.io 
- Docs are now visible immediately, and we don't have to push them
  separately.
 2016-08-30 21:19:31 -07:00
Todd Gamblin
9de7e25085 Merge branch 'bugfix/rtd-generation' into develop 2016-08-30 21:13:53 -07:00
Todd Gamblin
3a9388b43a Move sphinx-apidoc into conf.py, too. 2016-08-30 21:02:34 -07:00
Todd Gamblin
32834dd67d fix sys.path in conf.py 2016-08-30 20:50:14 -07:00
Todd Gamblin
05545a2528 test. 2016-08-30 20:49:56 -07:00
Todd Gamblin
41675e5ed6 sorted command index, better colification. 2016-08-30 20:49:56 -07:00
Todd Gamblin
918cb16921 Merge branch 'features/travis' into develop 2016-08-30 20:43:29 -07:00
Todd Gamblin
176a84a828 Don't test sphinx-generated conf.py for flake8 issues. 2016-08-30 20:30:43 -07:00
Todd Gamblin
c470ffe1ac Install graphviz before build. 2016-08-30 20:17:12 -07:00
Todd Gamblin
d9c5191563 Fix issue with path to Spack. 2016-08-30 19:57:33 -07:00
Todd Gamblin
fc748eb3d0 Exclude spack.__all__ from documentation. 
Everything in the __all__ list in the spack module is from some other
module, so only do their documentation in their original location.  This
also avoids issues like the fact that some directive names shadow spack
core module names.
 2016-08-30 16:36:50 -05:00
Adam J. Stewart
1be6267149 Undo changes to trailing triple quotes in docstring 2016-08-30 16:28:55 -05:00
Adam J. Stewart
f6d07b54f1 Always run spack unit tests 2016-08-30 16:01:00 -05:00
Adam J. Stewart
9b455e9254 Resolve new documentation issues that have cropped up 2016-08-30 15:58:22 -05:00
Adam J. Stewart
cc7df29e81 Keep dashes in command names, translate to underscores 2016-08-30 15:37:23 -05:00
Adam J. Stewart
ae2a803496 Make subcommands importable, '-' -> '_', fixes #1642 2016-08-30 15:36:33 -05:00
Adam J. Stewart
8d1a753a1b Fix spack --profile, fixes #1639 2016-08-30 15:35:58 -05:00
Adam J. Stewart
e04b76c2c3 Add spack to the PATH for doc tests 2016-08-30 15:35:58 -05:00
Adam J. Stewart
a0c8aca3a2 Remove py-mercurial, going with mercurial package instead 2016-08-30 15:35:58 -05:00
Adam J. Stewart
6795f4ca12 Use console instead of shell syntax lexer, fixes #1634 2016-08-30 15:35:58 -05:00
Adam J. Stewart
f856952728 Always run Documentation tests 2016-08-30 15:32:54 -05:00
Adam J. Stewart
f78134efa5 Fixes #1620, Missing references 2016-08-30 15:32:54 -05:00
Adam J. Stewart
867a92f083 Fixes #1618, Problems with spack package-list 2016-08-30 15:32:54 -05:00
Adam J. Stewart
69e50595bf Fix docstrings for core Spack libraries, fixes #1612 2016-08-30 15:32:54 -05:00
Adam J. Stewart
02239c094e Fix unexpected indentation in .rst files, #1612 2016-08-30 15:29:51 -05:00
Adam J. Stewart
eb56744f4d Fix package docstrings, #1612 2016-08-30 15:29:50 -05:00
Adam J. Stewart
0614bd206f Fix #1608, Include file not found 2016-08-30 15:28:09 -05:00
Adam J. Stewart
2326355497 Fix #1604 and fix #1605, title underline problems 2016-08-30 15:28:08 -05:00
Adam J. Stewart
c36f13e44d Added more missing dependencies 2016-08-30 15:21:15 -05:00
Adam J. Stewart
fda7fcd73d Fix #1594, duplicate explicit target name 2016-08-30 15:21:15 -05:00
Adam J. Stewart
a235d030ac Fix typos and bugs in Travis config file 
Forgot to change one of the TEST_TYPEs to TEST_SUITE.
-eq not working, trying == instead.
Cache doesn't seem to be working, removed.
 2016-08-30 15:21:15 -05:00
Adam J. Stewart
7f9d098c2f Add mercurial package, used as test dependency 2016-08-30 15:21:15 -05:00