Commit graph

26289 commits

Author SHA1 Message Date
Satish Balay
c9f8dd93f3
trilinos: new version 13.2.0 (#27106)
* trilinos: add @13.2.0, and switch default to cxxstd=14

* trilinos: fix python dependency when using +ifpack or +ifpack2

* trilinos: add conflict for ~epetra +ml when @13.2.0:

* trilinos: keep 13.0.1 as the preferred version

* Update var/spack/repos/builtin/packages/trilinos/package.py

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>

* update

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2021-11-02 13:07:42 -06:00
Greg Becker
b3711c0d9d
Improved error messages from clingo (#26719)
This PR adds error message sentinels to the clingo solve, attached to each of the rules that could fail a solve. The unsat core is then restricted to these messages, which makes the minimization problem tractable. Errors that can only be generated by a bug in the logic program or generating code are prefaced with "Internal error" to make clear to users that something has gone wrong on the Spack side of things.

* minimize unsat cores manually

* only errors messages are choices/assumptions for performance

* pre-check for unreachable nodes

* update tests for new error message

* make clingo concretization errors show up in cdash reports fully

* clingo: make import of clingo.ast parsing routines robust to clingo version

Older `clingo` has `parse_string`; newer `clingo` has `parse_files`.  Make the
code work wtih both.

* make AST access functions backward-compatible with clingo 5.4.0

Clingo AST API has changed since 5.4.0; make some functions to help us
handle both versions of the AST.

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2021-11-02 10:55:50 -07:00
Manuela Kuhn
3187689862
r-googlesheets4: add new package (#27114) 2021-11-02 11:46:48 -06:00
Manuela Kuhn
00b6927c65
r-dbplyr: add 2.1.1 (#27111) 2021-11-02 17:35:56 +00:00
Manuela Kuhn
9dc790bbe2
r-haven: add 2.4.3 (#27115) 2021-11-02 17:07:55 +00:00
Manuela Kuhn
ae76692c2e
r-lubridate: add 1.8.0 (#27117) 2021-11-02 16:55:27 +00:00
iarspider
fa63bebf36
New versions of py-jupyter-server; fix tests (#27153)
* New versions of py-jupyter-server; fix tests

* Update package.py
2021-11-02 10:37:53 -06:00
Tom Payerle
eee4522103
trilinos: Additional fix for linking C code when built with PyTrilinos (#19834)
This removes `-lpytrilinos` from Makefile.export.Trilinos so that C code
trying to link against a Trilinos built with PyTrilinos does not fail
due to undefined references to python routines (libpytrilinos is only
used when importing PyTrilinos in python, in which case those references
are already defined by Python).

There was already a bit of code to do something similar for C codes
importing Trilinos via a CMake mechanism, this extends that to a basic
Makefile mechanism as well.  This patch also updates the comments to
remove a stale link discussing this issue, and replacing with links to
the some Trilinos issue reports related to the matter.
2021-11-02 12:31:10 -04:00
Manuela Kuhn
b8a44870a4
r-vroom: add new package (#27118) 2021-11-02 11:28:43 -05:00
Manuela Kuhn
426033bc5b
r-brms: add 2.16.1 (#27148) 2021-11-02 11:21:54 -05:00
Manuela Kuhn
c2a7f8c608
r-rvest: add 1.0.2 (#27147) 2021-11-02 11:21:09 -05:00
Manuela Kuhn
429a60c703
r-callr: add 3.7.0 (#27146) 2021-11-02 11:19:09 -05:00
Manuela Kuhn
23f8a7331e
r-forcats: add 0.5.1 (#27113) 2021-11-02 11:17:22 -05:00
Manuela Kuhn
6e2de9e41f
r-processx-3.5.2 (#27119) 2021-11-02 11:13:13 -05:00
Seth R. Johnson
9cfecec002
relocate: do not change library id to use rpaths on package install (#27139)
After #26608 I got a report about missing rpaths when building a
downstream package independently using a spack-installed toolchain
(@tmdelellis). This occurred because the spack-installed libraries were
being linked into the downstream app, but the rpaths were not being
manually added. Prior to #26608 autotools-installed libs would retain
their hard-coded path and would thus propagate their link information
into the downstream library on mac.

We could solve this problem *if* the mac linker (ld) respected
`LD_RUN_PATH` like it does on GNU systems, i.e. adding `rpath` entries
to each item in the environment variable. However on mac we would have
to manually add rpaths either using spack's compiler wrapper scripts or
manually (e.g. using `CMAKE_BUILD_RPATH` and pointing to the libraries of
all the autotools-installed spack libraries).

The easier and safer thing to do for now is to simply stop changing the
dylib IDs.
2021-11-02 17:04:29 +01:00
Manuela Kuhn
34b2742817
r-hms: add 1.1.1 (#27116) 2021-11-02 11:03:52 -05:00
Manuela Kuhn
9d124bdac6
r-crayon: add 1.4.1 (#27110) 2021-11-02 10:49:56 -05:00
Manuela Kuhn
507f7a94d9
r-broom: add 0.7.9 and 0.7.10 (#27109) 2021-11-02 10:48:32 -05:00
Sinan
5fdf6e5f68
package/qgis_revert_incorrect_constraint (#27140)
* package/qgis_revert_incorrect_constraint

* fix bug

* also update dependency constraints

* also update python version constraints

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2021-11-02 10:43:29 -05:00
iarspider
669954a71d
New version: py-isort 5.9.3 (#27144) 2021-11-02 10:42:34 -05:00
iarspider
6f44bf01e0
New version: py-jupyter-console 6.4.0; download sources from pip (#27150) 2021-11-02 10:37:37 -05:00
Joseph Wang
372fc78e98
yoda: add zlib as a dependency (#26454)
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-11-02 12:37:23 +01:00
Cameron Smith
ca30940868
pumi: support build/install time and stand-alone testing (#26832) 2021-11-02 12:18:46 +01:00
Bernhard Kaindl
5a4d03060b
gtk packages: fix dependencies (#26960)
gconf depends on gettext and libintl (dep: intltool)
glibmm, gtkmm, libcanberra and cups need pkgconfig
glibmm needs libsigc++ < 2.9x(which are 3.x pre-releases)
libsigc++@:2.9 depends on m4 for the build

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-11-02 10:39:25 +00:00
Chien-Chang Feng
bf411c7c55
pgplot: add intel compiler support and add more driver (#26761) 2021-11-02 11:30:28 +01:00
Massimiliano Culpo
3f3048e157
Fix GitHub Action's container build (#27143)
#26538 introduced a typo that causes the Docker image
build to fail.
2021-11-02 04:02:04 -06:00
Jean Luca Bez
85bdf4f74e
h5bench: update maintainers and versions (#27083) 2021-11-02 10:52:36 +01:00
Glenn Johnson
cf50905ee9
modifications to docbook-xml (#27131)
- added more versions in case packages request a specific version of
  docbook-xml
- added a "current" alias to handle when packages use that
2021-11-02 10:50:07 +01:00
Glenn Johnson
f972863712
fsl: new version, updated constraints and patches (#27129)
- add version 6.0.5
- add patch to allow fsl to use newer gcc versions
- add patch to allow fsl to use newer cuda versions
- remove constraints on gcc and cuda versions
- add filters to prevent using system headers and libraries
- clean up the installed tree
2021-11-02 10:49:22 +01:00
Michael Kuhn
1e26e25bc8
spack arch: add --generic argument (#27061)
The `--generic` argument allows printing the best generic target for the
current machine. This can be quite handy when wanting to find the
generic architecture to use when building a shared software stack for
multiple machines.
2021-11-02 10:19:23 +01:00
Tamara Dahlgren
9d3d7c68fb
Add tag filters to spack test list (#26842) 2021-11-02 10:00:21 +01:00
dependabot[bot]
94e0bf0112
build(deps): bump actions/checkout from 2.3.4 to 2.3.5 (#27135)
Bumps [actions/checkout](https://github.com/actions/checkout) from 2.3.4 to 2.3.5.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](5a4ac9002d...1e204e9a92)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-11-02 08:55:28 +01:00
iarspider
80807e6dd4
Add missing dependency to py-setuptools-scm (#27132) 2021-11-01 20:04:43 -06:00
Weiqun Zhang
840c9b7b4a
amrex: add new release 21.11 (#27126) 2021-11-02 02:49:03 +01:00
Vicente Bolea
6a5ea3db99
vtkm: add v1.7.0-rc1 (#26882) 2021-11-02 02:42:10 +01:00
Manuela Kuhn
78a073218f
r-tzdb: add new package (#27105) 2021-11-01 17:10:13 -05:00
Manuela Kuhn
881b2dcf05
r-rcpp: add 1.0.7 (#27088) 2021-11-01 17:09:18 -05:00
eugeneswalker
8bc01ff63c
py-pylint needs pip for build (#27123)
* py-pylint: needs py-pip for build

* alphabetize py- dependencies

* add comment pointing to issue

* fix style
2021-11-01 21:50:36 +00:00
Andre Merzky
e0a929ba60
New package: exaworks (#27054) 2021-11-01 14:15:41 -07:00
Tamara Dahlgren
d4cecd9ab2
feature: add "spack tags" command (#26136)
This PR adds a "spack tags" command to output package tags or 
(available) packages with those tags. It also ensures each package
is listed in the tag cache ONLY ONCE per tag.
2021-11-01 20:40:29 +00:00
Chuck Atkins
b56f464c29
GCC 11 fixes (#27122)
* adios2: Fix compile errors for gcc 11

* unifyfs: Suppress bogus warnings for gcc 11

* conduit: Fix compile errors for gcc 11
2021-11-01 14:31:39 -06:00
Harmen Stoppels
6845307384
Pin actions to a commit sha instead of tag (#26538) 2021-11-01 10:44:03 -07:00
Bernhard Kaindl
02aa1d5d48
intel-gpu-tools: add v1.20 (#26588)
Add version 1.20, fix including the glib-2.0 header files
and add missing dependencies: libunwind and kmod.
2021-11-01 17:35:14 +01:00
Bernhard Kaindl
8ca411c749
glib: skip tests which we cannot make pass (#26693)
glib has a few tests which have external dependencies or
try to access the X server. We cannot run those.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-11-01 17:33:35 +01:00
Jon Rood
888de27210
kokkos-nvcc-wrapper: add HPE MPT to MPI environment variables (#27069) 2021-11-01 17:31:33 +01:00
Chuck Atkins
15d407c674
ci: Enable more packages in the DVSDK CI pipeline (#27025)
* ci: Enable more packages in the DVSDK CI pipeline

* doxygen: Add conflicts for gcc bugs

* dray: Add version constraints for api breakage with newer deps
2021-11-01 08:54:50 -07:00
Satish Balay
a1eb5596ec
kokkos-kernels: add variant 'shared' (#27097)
* kokkos-kernels: add variant 'shared'

* Update var/spack/repos/builtin/packages/kokkos-kernels/package.py
2021-11-01 11:45:26 -04:00
iarspider
6c4f891b8f
New version: py-typing-extensions 3.10.0.2 (#27120) 2021-11-01 10:04:18 -05:00
iarspider
99ee9a826a
New version: py-beautifulsoup4 4.10.0 (#27121) 2021-11-01 10:02:57 -05:00
iarspider
8dcbd2ee6f
alpgen: fix cms recipe (#26812) 2021-11-01 15:13:25 +01:00