Commit graph

21356 commits

Author SHA1 Message Date
Olivier Cessenat
fee5cf4e49
med: add HDF5 support and other variants (#23555)
Enhancing package med enlarged HDF5 compatibility, more options, new version
2021-05-11 09:01:49 -04:00
Tiziano Müller
aacba57e0a
cp2k: update libvori and libxc dependencies (#23553) 2021-05-11 11:09:47 +02:00
Phil Tooley
566becbbfe use package supplied autogen.sh (#20319) 2021-05-10 23:11:29 -07:00
Greg Becker
8c05387ebc respect -k/verify-ssl-false in _existing_url method (#21864) 2021-05-10 23:11:29 -07:00
Valentin Volkl
fb207b80ce root: add first spack external find support
only parses the version, variant parsing will follow.
2021-05-10 21:59:38 -07:00
Jen Herting
d25455277b
[py-pyjwt] added version 2.1.0 (#23547) 2021-05-10 19:57:05 -05:00
lukebroskop
b27ac37547
CrayPE fixes for MAGMA (#23497)
Force CCE to compile fortran modules with lower case names, allow for CCE to be the host compiler with nvcc
2021-05-10 17:42:56 -07:00
Vasileios Karakasis
b6c124572c
Add ReFrame 3.6.0 (#23551) 2021-05-10 17:33:24 -07:00
darmac
795f5e4af1
New package: libmicrodns (#22145) 2021-05-10 16:45:29 -07:00
Tom Payerle
3b590177c9
zfp: Add python as explicit dependency (#23478)
A proposed fix for #23436
2021-05-10 16:35:06 -07:00
Jen Herting
ff4fd6c5bc
[py-websocket-client] added version 0.48.0 (#23549) 2021-05-10 22:51:26 +00:00
eugeneswalker
ea2cba7b40
tau: revert depends_on generic elf provider (#23548) 2021-05-10 22:26:36 +00:00
Harmen Stoppels
3d2b1277e9
Bump fuse-overlayfs (#23541) 2021-05-10 14:35:06 -07:00
lukebroskop
829199a460
craype fix for omega-h (#23504)
add -Wno-final-dtor-non-final-class flag
2021-05-10 14:31:27 -07:00
Axel Huebl
2913000d92
WarpX: 21.05 (#23543)
Add the latest release of WarpX.
2021-05-10 15:04:33 -06:00
lukebroskop
e58d07a819
CrayPE fix for unifyfs (#23498)
When building with CCE, do not use the -Werror flag
2021-05-10 14:02:30 -07:00
lukebroskop
50eec40232
CrayPE fix for otf2 (#23499)
when using Cray's cs-prgenv, allow the build system to detect the systems as an XC
2021-05-10 13:16:41 -07:00
Tamara Dahlgren
2450ee0fb0
bugfix: correct force_autoreconf method syntax (#23546) 2021-05-10 19:31:11 +00:00
lukebroskop
57ccb6ea13
CrayPE fix for json-c (#23515)
remove -Werror flag when compiling with cce
2021-05-10 13:16:25 -06:00
eugeneswalker
a5422f8015
depend on elf provider in place of specifically libelf (#23524) 2021-05-10 11:04:18 -07:00
Adam J. Stewart
e219d89d33
py-numpy: add v1.20.3 (#23545) 2021-05-10 17:42:55 +00:00
eugeneswalker
4903eabc7a
compare full old_prefix and new_prefix instead of layout_root (#23506) 2021-05-10 10:36:53 -07:00
eugeneswalker
ccdda9a74e
metall: fix incorrect use of setup_build_environment (#23532) 2021-05-10 09:26:19 -07:00
darmac
ad44c3ad51
Add new package: ima-evm-utils (#22161) 2021-05-10 10:10:02 -06:00
Cameron Rutherford
c2cd597b45
Use define_from_variant for HiOp package (#23536) 2021-05-10 10:04:07 +02:00
Michael Kuhn
d2cc248192
binutils: Improve flag_handler (#22642)
`flag_handler` currently passes all flags via injection. This makes it
impossible to override the default flags provided by autotools (for
instance, `binutils cflags='-O2'` will still build with `-O2 -g`).
Instead, use injection for our workaround flags and pass other flags to
the build system.
2021-05-10 10:03:24 +02:00
Adam J. Stewart
ecb7d6dca1
py-matplotlib: add v3.4.2 (#23531) 2021-05-08 10:54:28 -07:00
Morten Kristensen
63d4d37c91
py-vermin: add latest version 1.2.0 (#23528) 2021-05-08 09:20:19 -05:00
Massimiliano Culpo
00a1418d10 clingo: don't skip tests that deal with file permissions
When we first merged the ASP-based solver, unit-tests
were run in a Docker container with root permissions
and that was preventing a few tests to succeed.

Since some time though, clingo is tested as a regular
user within Github Actions VMs, so we should start to
run checks again.
2021-05-08 06:14:44 -07:00
lukebroskop
daebf5caf8
craype fix for pdt (#23505)
* craype fix for pdt

adapt the pdt package for cce

* fix style issues
2021-05-07 17:16:13 -07:00
Jerome Soumagne
eb273f5c2f
mercury: add version 2.0.1 (#23521) 2021-05-07 17:10:14 -07:00
lukebroskop
c1b314e564
CrayPE fix for pfunit (#23512)
allow cce to be the compiler
2021-05-07 17:08:41 -07:00
dsjense
45f84ee548
Bugfix/matplotlib clang lto (#23519)
* Disable link-time optimization for matplotlib when using Clang.

* Remove duplicated line.

* Disable LTO only for versions >= 3.3.0.
2021-05-07 23:56:28 +00:00
lukebroskop
c175d24c0e
Add conflict for the CCE compiler (#23502)
Add conflict for the CCE compiler
2021-05-07 19:24:35 +00:00
Tom Payerle
5a7c339b0c
geos: Fix config issues with python bindings using python3 (#23479) (#23480)
* geos: Fix config issues with python bindings using python3 (#23479)

This should fix some config issues when building geos with python
bindings and using python3 --- the geos configuration scripts had
a few python2-isms.

I only tested (lightly; geos built and I can import geos in python3)
on 3.8.1, but I did check that the patch can at least be applied
in 3.5.

I belatedly discovered that geos dropped all the SWIG bindings
in @3.9, so I also added some conflicts on the +python and +ruby
options to note that they are not supported in 3.9.

* geos: adding omitted patch file
2021-05-07 12:27:29 -05:00
Scott Wittenburg
91de23ce65 install cmd: --no-add in an env installs w/out concretize and add
In an active concretize environment, support installing one or more
cli specs only if they are already present in the environment.  The
`--no-add` option is the default for root specs, but optional for
dependency specs.  I.e. if you `spack install <depspec>` in an
environment, the dependency-only spec `depspec` will be added as a
root of the environment before being installed.  In addition,
`spack install --no-add <spec>` fails if it does not find an
unambiguous match for `spec`.
2021-05-07 10:07:53 -07:00
Peter Josef Scheibel
a3d58129ec return concrete spec (as is advertised in the docstring) 2021-05-07 10:07:53 -07:00
Peter Josef Scheibel
320eb4872d fix check when retrieving matching spec from environment when there is a match with a root spec as well as with a dependency of a root spec 2021-05-07 10:07:53 -07:00
Claire Guilbaud
d82a0c6799
Update py-hieroglyph (#23279) 2021-05-07 09:12:30 -05:00
Sergey Kosukhin
7c6f65d36b
fdb: new package with deps (#23175) 2021-05-07 15:02:57 +02:00
Tiziano Müller
ccf9a11ff9
compilers: aocc is now also available as a Cray PrgEnv (#23289) 2021-05-07 14:55:32 +02:00
Adam J. Stewart
07ed432f27
GDAL: add v3.3.0 (#23426) 2021-05-07 14:54:12 +02:00
Harmen Stoppels
129de9083a
Show useful error in build-env (#23458)
Instead of an out of bounds error tell the user to provide a spec
2021-05-07 14:53:08 +02:00
Mark W. Krentel
1698be3c3c
libmonitor: add v2021.04.27 (#23460) 2021-05-07 14:37:20 +02:00
Robert Mijakovic
72f979a92b
at-spi2-core: add v2.40.1 (#23467)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-05-07 14:32:39 +02:00
Robert Mijakovic
d9c149bb1a
at-spi2-atk: add v2.38.0 (#23468)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-05-07 14:32:00 +02:00
Andrei Poenaru
8d016b87d2
gdbm: patch when using arm@21.0: (#23492) 2021-05-07 12:20:04 +00:00
Greg Sjaardema
b6b0fade46
CGNS:add v4.2.0, v4.1.2 and remove conflicting variant (#23481)
Added the checksum for 4.1.2 and 4.2.0

The `parallel` variant  did the exact same behavior as the `mpi` variant, but they had different default values than each other.  Both variants set the value of `-DCGNS_ENABLE_PARALLEL`, so it was unclear which variant was "winning" and could definitely result in a non-intuitive build.   Did a grep of the spack packages and none of them where using the `parallel` variant to control the cgns options.  Retained the `mpi` variant as that one is being used by multiple packages.

One issue that remains to be solved is that the default integer size has changed from 32-bit to 64-bit for the 4.2.0 release.  This is controlled by the `int64` variant which currently defaults to `OFF`.  There should maybe be some thought about changing the default to match the default of the current release, or maybe having a version-specific default...  For now, left the behavior as it has been for previous versions.
2021-05-07 14:14:56 +02:00
Howard Pritchard
4fb31be45d
OpenMPI: dont apply atomic patch for 4.1.1 and later (#23483)
The patch available in spack does not patch
cleanly for the 4.1.1 and presumably later releases.

See Open MPI commit b8a8096a3f153380f95af8f285f48e926eb18bf1

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2021-05-07 14:12:46 +02:00
Olivier Cessenat
588bdb1ef9
adms: new package (#23466) 2021-05-07 13:42:55 +02:00