Commit graph

5497 commits

Author SHA1 Message Date
Justin M Wozniak
163bdfde93 Swift/T: all packages (#3130)
* New package.py for ExM C-Utils: An initial package dependency for Swift/T
* New package.py for ADLB/X: A 2nd package dependency for Swift/T
* New package.py for Turbine
* New package.py for STC
2017-02-17 11:35:45 -08:00
Adam J. Stewart
c2fa7b1254 Add latest version of OpenSSL (#3171) 2017-02-17 07:11:54 -08:00
Ce Qin
f7a0a6fbc4 Add tag master for version develop of dealii. (#3048) 2017-02-16 18:37:20 -08:00
serbanmaerean
7bebfd29c2 spectrum-mpi: Add url info to spectrum-mpi package file (#3042)
Spack wants URL info even for external packages.  Without it, I get
the following error:

NoURLError: Package SpectrumMpi has no version with a URL.
  File "/home_local/serbanspack/spack/lib/spack/spack/repository.py", line 580, in get
    self._instances[key] = package_class(copy)
  File "/home_local/serbanspack/spack/lib/spack/spack/package.py", line 562, in __init__
    f = fs.for_package_version(self, self.version)
  File "/home_local/serbanspack/spack/lib/spack/spack/fetch_strategy.py", line 878, in for_package_version
    url = pkg.url_for_version(version)
  File "/home_local/serbanspack/spack/lib/spack/spack/package.py", line 682, in url_for_version
    raise NoURLError(cls)
2017-02-14 11:28:35 -08:00
Gregory Lee
4a20d170f4 fixes for pygtk and some dependencies (#3077) 2017-02-14 10:52:05 -08:00
Brian Van Essen
56952aaf1f LBANN (#3049)
* Creating a spack package for LLNL's LBANN (Livermore Big
Artificial Neural Network) training toolkit.

* Recipe for building LBANN toolkit.  Contains limited feature set and
is optimized for building with GNU gcc and OpenBLAS.

* Removed unnecessary dependencies based on reviewers feedback.

* Added support for the int64 data type in the Elemental library.  This
is required for supporting indices for large matrices.

* Added a variant to force a sequential weight matrix initialization.
This is slow, but provides an initialization that is independent of
model parallelism.

* Added a guard to prevent building Elemental with the Intel compiler
for versions that have known bugs.
2017-02-13 11:57:46 -08:00
Massimiliano Culpo
e34acd0074 qa: allow fast finish to avoid consuming a precious OSX build on a PR that will fail (#3120) 2017-02-10 18:21:52 -08:00
Adam J. Stewart
4dd0b349f9 Add Jmol package (#3041) 2017-02-10 16:18:56 -08:00
Adam J. Stewart
6e2903534a Add patch to allow PGI to build Bison (#3044) 2017-02-10 16:17:55 -08:00
Massimiliano Culpo
e24fdb49ea fix: don't call setup_environment when not needed (#3060)
* Don't call setup_environment when not needed. fixes #3059

* setup_environment and modules: added unit tests
2017-02-10 16:09:43 -08:00
Denis Davydov
cbbf5791ba numdiff: update dependencies and fix (#3061)
compile with -O0 as per upstream known issue with optimization and GMP,
according to Ubuntu folks.
2017-02-10 16:05:07 -08:00
Justin M Wozniak
2305f6434e New package.py for ExM C-Utils and Turbine (#3076)
* New package.py for ExM C-Utils: An initial package dependency for Swift/T
* New package turbine

* Fix package.py as requested by @adamjstewart

* New package.py for ADLB/X: A 2nd package dependency for Swift/T

* Add latest version of GNU Parallel (#3106)

* Address formatting guidelines from @adamjstewart

* WIP on new Turbine package.py

* Formatting fixes

* Complete Turbine package.py
2017-02-10 16:03:40 -08:00
healther
c98249c129 Add version 2017.0.098 to ipp (#3093) 2017-02-10 16:00:52 -08:00
Erik Schnetter
4362caa51a es: Declare readline dependency (#3071) 2017-02-10 16:00:20 -08:00
Adam J. Stewart
57855cab5d Explicitly tell MPC where to find its deps (#3073) 2017-02-10 15:59:46 -08:00
healther
563b6ab73a Add version 2017.0.098 to intel-mkl (#3092) 2017-02-10 15:55:02 -08:00
healther
2aec15a6f9 Add version 2.49.7 to glib (#3089) 2017-02-10 15:52:39 -08:00
becker33
f9e3b58d7e Make distro more robust to unreadable files (#3110)
* Make distro more robust to unreadable files. Will upstream

* Comment for clarify
2017-02-10 10:23:04 -08:00
Adam J. Stewart
f1ca79ba6c Add latest version of PGI (#3107) 2017-02-09 13:58:17 -08:00
Denis Davydov
b07835904a valgrind: add develop; fix build on macOS with clang (#3066)
- add develop version to valgrind; fix build on macOS with clang
- switch valgrind to AutotoolsPackage
2017-02-09 13:57:50 -08:00
Denis Davydov
b1eb921f28 make svn fetch quiet (#3070) 2017-02-09 13:55:18 -08:00
Adam J. Stewart
8d7bcbbbbb Add latest version of GNU Parallel (#3106) 2017-02-09 10:38:08 -08:00
Adam J. Stewart
2a3228e004 Add latest version of NCO (#3080) 2017-02-09 08:33:01 -08:00
Massimiliano Culpo
c91d18b622 qa: adjust thresholds for acceptance (#3105) 2017-02-09 08:31:57 -08:00
Todd Gamblin
b192011add Revert "db and concretization of packages modified after installation: fixes #2911" (#3078) 2017-02-08 13:12:10 -08:00
Massimiliano Culpo
79c1f7885a db and concretization of modified packages: fixes #2911 (#2920) 2017-02-07 18:28:01 -08:00
Massimiliano Culpo
28b7ef3175 codecov: added commit status, made green a reachable state (#3051) 2017-02-07 18:25:38 -08:00
Elizabeth Fischer
892955cc46 Add comments documenting problems in recent versions of NetCDF. (#3058) 2017-02-07 18:23:33 -08:00
Denis Davydov
4264051954 fix usage of self.build_directory in espressopp and astyle (#3053) 2017-02-07 18:22:52 -08:00
George Hartzell
b1f5b5f75b Add comment explaining why patch is still needed (#3054)
[The fix](https://github.com/golang/go/issues/17986) for the small buglet addressed by `misc-cgo-testcshared.patch` has been merged into the tree a while back.  I was surprised to see that it wasn't in 1.7.5 and did a bit of digging.  It is *has not* been merged into the 1.7 branch but it *has* been merged into 1.8 (and therefor the patch will no longer be necessary).

Figured I'd document my digging for the next person to come along.
2017-02-07 18:22:30 -08:00
Denis Davydov
7bf7016383 mpfr: add 3.1.5 (#3050) 2017-02-07 18:22:13 -08:00
Matthew Scott Krafczyk
f71df7bda3 move rpath from ALL to other sections of site.cfg (#3028)
* move rpath from ALL to other sections of site.cfg.  Solves #3007
* Add back mac condition to py-numpy
* Refactor py-numpy a bit.
2017-02-07 13:15:02 -08:00
Brian Van Essen
88e9bb586e Added a new version of the Google protobuf to the spack package. (#3046) 2017-02-07 10:05:02 -08:00
Adam J. Stewart
941dfcbe43 Bash Programmable Completion for Spack (#3026) 2017-02-06 12:34:35 -08:00
serbanmaerean
d78a35bb54 spectrum-mpi: Add new package file for external package (#3005)
* spectrum-mpi: Add new package file for external package

IBM Spectrum MPI is a commercial implementation of MPI based on
OpenMPI.  It is usually install in /opt/ibm/spectrum_mpi.

Users need to add the Spectrum MPI package in their packages.yaml
file as follows:

packages:
    spectrum-mpi:
        version: ['10.1.0.2']
        paths:
            spectrum-mpi@10.1.0.2: /opt/ibm/spectrum_mpi/
        buildable: False

    all:
        providers:
            mpi: [spectrum-mpi@10.1.0.2]

* spectrum-mpi: Added license files and removed the versions

No need for versions as the package is external.

* spectrum-mpi: Remove extraneous defines

Keep only the defines that other MPI implementation define in their
package file:
    self.spec.mpicc
    self.spec.mpicxx
    self.spec.mpif77
    self.spec.mpifc
2017-02-06 10:53:53 -08:00
Brian Van Essen
ffd582b2f6 Elemental (#2991)
* Add a package for the Elemental distributed linear algebra library.
2017-02-06 00:04:41 -08:00
Gregory Lee
158a1b9c36 fix OMPT support in Archer (#3035) 2017-02-05 23:34:38 -08:00
Nicolas Richart
7c09ad5305 Boostrapping the lammps package (#3032)
* First commit for the lammps package
* reviewed by adamjstewart and davydden
2017-02-05 19:34:53 -08:00
sknigh
dfff1f5cf4 Changed spark URL, Added version 2.0.2, 2.1.0 (#3027) 2017-02-05 15:56:34 -08:00
George Hartzell
d1c7f9c8bd Add a package for hunspell (#3029)
Add a package for the hunspell spelling checker.

This was created by `spack create`, trimmed down, and tested on CentOS 7.
2017-02-05 15:55:55 -08:00
健美猫
47f9096073 Use the official Maven site. (#3034) 2017-02-05 15:49:05 -08:00
Gregory Lee
ccb07dc25e added archer OpenMP race detector and its deps (#3030) 2017-02-04 15:42:22 -08:00
becker33
968199de7d Fix spec hash printing (#2941)
- Fix format printing to match command line for hashes and full name formats
- Update spack graph to use new format
- Changed format string signifier for hashes from `$#` to `$/`
2017-02-03 18:27:34 -08:00
Carlos Bederián
5aefaa6ffe Add FFTW 2.1.5 (#2987) 2017-02-03 18:26:27 -08:00
Carlos Bederián
384698157a MKL: Provide scalapack (#2974) 2017-02-03 18:18:31 -08:00
Erik Schnetter
4c1c284e56 New package “es” (extensible shell) (#3009) 2017-02-03 18:09:25 -08:00
George Hartzell
5e2827433c Update go to v1.7.5 (#3023)
Update the go package to v1.7.5.

- This release no longer needs the time-test patch (it's been merged upstream).
- This release still seems to need the cgo-testcshared patch.
- Also add a comment about environment set up that I need to build it successfully on a very large server.

Tested on CentOS 7.
2017-02-03 18:09:01 -08:00
健美猫
864670c0ab Retrive CUDA installers from Internet. (#3012) 2017-02-03 18:07:54 -08:00
sknigh
24553c12bb Flex and Glib builds are dependent on m4 (#3022) 2017-02-03 17:19:23 -08:00
George Hartzell
c456dfb60f Make module autoload warnings configurable (#2763)
Modules generated by the module creation machinery currently print out
a notice that warnts the user that things are being autoloaded.  In
some situations those warnings are problematic.  See #2754 for
discussion.

This is a first cut at optionally disabling the warning messages:

- adds a helper tothe EnvModule base class that encapsulates the
  config file variable;
- adds a method to the base class that provides a default (empty)
  code fragment for generating a warning message;
- passes the warning fragment into the bit that formats the autoload
  string;
- adds specialized autload_warner() methods in the tcl and lmod
  subclasses;; and finally
- touches up the autoload_format strings in the specialized classes.
2017-02-03 15:53:30 -08:00