Commit graph

7777 commits

Author SHA1 Message Date
健美猫
a211795a0c Add Intel Parallel Studio XE 2016u4 and 2015u6. (#3182) 2017-02-18 19:12:05 -08:00
Adam J. Stewart
49d7f9db3d Add patches to allow PGI to build Tar properly (#3177) 2017-02-18 19:09:50 -08:00
Adam J. Stewart
4397ce8118 Replace GCC-specific warning flags with valid PGI flags (#3137) 2017-02-18 16:42:45 -06:00
Adam J. Stewart
341b78a96d Add patch to allow M4 make check to pass for PGI (#3108) 2017-02-18 16:42:13 -06:00
Denis Davydov
7f89bc1e1d octave: fix missing --without statements (#3178) 2017-02-18 16:13:00 -06:00
healther
1a5b3e184f Add package: log4cxx (#3097)
* Add log4cxx package

* add missing patch files to log4cxx

* remove unnecessary dependencies

* this fails at 'make check'

* this is the AutotoolsPackage version

* fixed install bug
2017-02-18 16:10:15 -06:00
healther
63a0ca729d Added 2017 Intel libraries (#3084) 2017-02-18 16:02:33 -06:00
healther
5712b524cc Add binutils variant +plugins (#3083)
* Add binutils variant +plugins

* added description to plugins variant
2017-02-18 16:02:01 -06:00
Jim Galarowicz
4da66d71b0 Fix for qt3 specific qt build (#3063)
* Update the krell institute products to use the latest features of spack for building on cluster platforms.

* Address travis error messages and resubmit the pull request.

* Update the contents of openspeedshop package.py so it passes the flake8 tests.

* Fix flake8 error-whitespack issue in mrnet package.py file.

* Add updates based on spack reviewer feedback.

* More fixes based on comments from reviewers.  Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH.

* More review related changes.  Update MPIOption.append lines and take out xercesc references.

* Create a base options function for common openspeedshop base cmake options to reduce redundencies.

* Add libxml2+python depends on to get around issues with the libxml2 package file.

* Using boost over 1.60.0 causes compile errors.  This is a known boost bug. Also, dyninst-9.2.0 is set to be the vesrion of dyninst to use with OSS, as of now. The newer version fails to build.

* Fix bad syntax in specifying the boost version range.

* Update the version numbers for the krell institute components and tools: cbtf and openspeedshop.

* Do not build glib for qt3, it is not needed and causes build problems at this time anyway.

* A fix was added for setting LD_LIBRARY_PATH in the qt3 build, but if LD_LIBRARY_PATH is not set the qt build fails. So so check and set LD_LIBRARY_PATH if not set, update if it is set.

* Update the fix for qt3 build by setting LD_LIBRARY_PATH instead of checking for whether it is set or not per Adams comment that spack clears LD_LIBRARY_PATH.

* A fix was added for setting LD_LIBRARY_PATH in the qt3 build, but if LD_LIBRARY_PATH is not set the qt build fails. So so check and set LD_LIBRARY_PATH if not set, update if it is set.

* Trim comments to fit more concisely.

* Fix tabs versus spaces and swap if and else clause check from a negative to a positive check.
2017-02-18 15:56:40 -06:00
sknigh
69b01c617e Added shmem variant to Score-p build (#3024)
* Disable by default to fix builds on Centos 7
2017-02-18 15:54:57 -06:00
Pramod Kumbhar
18334edf1a Bug fix: PDT configure uses -prefix, not --prefix (#2976)
* This bug was introduced in #2845.
2017-02-18 15:45:47 -06:00
Adam J. Stewart
c2d210568c Fix tab completion after change to uninstall flag (#3175) 2017-02-18 13:08:59 -06:00
Adam J. Stewart
6d3f649382 Fix readline support in spack python (#3132)
* Fix readline support in `spack python`
* Add documentation on `spack python`
* Add unit tests for `spack python`
2017-02-17 15:58:06 -08:00
serbanmaerean
0d22b3eea9 netlib-lapack: Update package file for netlib-lapack to work with IBM (#3040)
Update package file for netlib-lapack to work with IBM XL compiler

The flag -qzerosize is redundant, as the IBM XL compiler should set this flag
by default.  However, at this time the default flag appears to be ignore.
Hence, I am setting it in the package file as well, as it has no negative
effect if set twice.
2017-02-17 15:51:10 -08:00
healther
5c37c17173 Add package: py-apache-libcloud (#3101)
* Add py-apache-libcloud package
2017-02-17 15:30:49 -08:00
Adam J. Stewart
524303db06 Set default module type based on modules.yaml (#3173) 2017-02-17 13:46:31 -08:00
Adam J. Stewart
e492aff4f7 More consistent yes/no prompts (#3174)
* More consistent yes/no prompts
* Add ==> prefix to yes/no and number prompts
2017-02-17 13:45:02 -08:00
Elizabeth Fischer
29d070e50c On uninstall, change shortcut flag for --dependents to -R, as per Spack convention. (-r = --dependencies, -R = --dependents). (#1917) 2017-02-17 12:08:17 -08:00
Elizabeth Fischer
7180613218 graphviz: Tame Language Bindings (#1089)
graphviz: 
  * Download from Fedora projet, as main graphviz site not working.
  * Disable java because Spack does not yet support Java, and the system might not have it installed.
  * Added all language binding variants; disabled enough in the default configuration to avoid dependencies.
  * Removed alternate download location (turned into comments).
  * Turn off all language bindings by default.
  * Raise an exception on bindings that have not been verified to work.
  * Added text indicating what works and doesn't work when user runs `spack info`.
2017-02-17 12:07:54 -08:00
健美猫
1de2c53935 Patch openblas Makefile only when version >= 0.2.16. (#3170) 2017-02-17 12:03:43 -08:00
Adam J. Stewart
38dd01f6b5 Fix missing space in error message output (#3169) 2017-02-17 12:02:48 -08:00
Elizabeth Fischer
682d5cf164 py-git2: New Package (#1971) 2017-02-17 11:55:22 -08:00
Elizabeth Fischer
8cb7f3d262 Keep Curl Bootstrap Working With http:// (#3113)
* Add comments documenting problems in recent versions of NetCDF.
* Add comments to packages required to install curl.
2017-02-17 11:52:08 -08:00
Adam J. Stewart
a9cf99b3e2 Fix typos in External Packages documentation (#3168) 2017-02-17 11:49:55 -08:00
George Hartzell
ea1c582145 go: add support for v1.8 (#3165) 2017-02-17 11:48:45 -08:00
Denis Davydov
3c5024232c abinit: fix compilation on macOS, disable internal netcdf (#3157)
* abinit: fix compilation on macOS
* disable internal netcdf
2017-02-17 11:46:58 -08:00
Carlos Bederián
0f51daff24 hdf5: configure uses FCFLAGS instead of FFLAGS (#3155)
When building `hdf5+pic`, `-fPIC` wasn't being passed to the fortran compiler because `configure` takes `FCFLAGS` instead of `FFLAGS`.
2017-02-17 11:44:16 -08:00
Kelly (KT) Thompson
78962c8978 Provide Random123 header-only package. (#3141)
Add DESRES Random123 package:
- http://www.deshawresearch.com/resources_random123.html
2017-02-17 11:40:14 -08:00
Adam J. Stewart
c719802c83 Add new version of zlib, deprecate 1.2.10 (#3136) 2017-02-17 11:39:21 -08:00
Adam J. Stewart
4f60011121 Add patch to allow ncurses to be built with PGI (#3135) 2017-02-17 11:39:05 -08:00
Justin M Wozniak
163bdfde93 Swift/T: all packages (#3130)
* New package.py for ExM C-Utils: An initial package dependency for Swift/T
* New package.py for ADLB/X: A 2nd package dependency for Swift/T
* New package.py for Turbine
* New package.py for STC
2017-02-17 11:35:45 -08:00
Adam J. Stewart
c2fa7b1254 Add latest version of OpenSSL (#3171) 2017-02-17 07:11:54 -08:00
Ce Qin
f7a0a6fbc4 Add tag master for version develop of dealii. (#3048) 2017-02-16 18:37:20 -08:00
serbanmaerean
7bebfd29c2 spectrum-mpi: Add url info to spectrum-mpi package file (#3042)
Spack wants URL info even for external packages.  Without it, I get
the following error:

NoURLError: Package SpectrumMpi has no version with a URL.
  File "/home_local/serbanspack/spack/lib/spack/spack/repository.py", line 580, in get
    self._instances[key] = package_class(copy)
  File "/home_local/serbanspack/spack/lib/spack/spack/package.py", line 562, in __init__
    f = fs.for_package_version(self, self.version)
  File "/home_local/serbanspack/spack/lib/spack/spack/fetch_strategy.py", line 878, in for_package_version
    url = pkg.url_for_version(version)
  File "/home_local/serbanspack/spack/lib/spack/spack/package.py", line 682, in url_for_version
    raise NoURLError(cls)
2017-02-14 11:28:35 -08:00
Gregory Lee
4a20d170f4 fixes for pygtk and some dependencies (#3077) 2017-02-14 10:52:05 -08:00
Brian Van Essen
56952aaf1f LBANN (#3049)
* Creating a spack package for LLNL's LBANN (Livermore Big
Artificial Neural Network) training toolkit.

* Recipe for building LBANN toolkit.  Contains limited feature set and
is optimized for building with GNU gcc and OpenBLAS.

* Removed unnecessary dependencies based on reviewers feedback.

* Added support for the int64 data type in the Elemental library.  This
is required for supporting indices for large matrices.

* Added a variant to force a sequential weight matrix initialization.
This is slow, but provides an initialization that is independent of
model parallelism.

* Added a guard to prevent building Elemental with the Intel compiler
for versions that have known bugs.
2017-02-13 11:57:46 -08:00
Massimiliano Culpo
e34acd0074 qa: allow fast finish to avoid consuming a precious OSX build on a PR that will fail (#3120) 2017-02-10 18:21:52 -08:00
Adam J. Stewart
4dd0b349f9 Add Jmol package (#3041) 2017-02-10 16:18:56 -08:00
Adam J. Stewart
6e2903534a Add patch to allow PGI to build Bison (#3044) 2017-02-10 16:17:55 -08:00
Massimiliano Culpo
e24fdb49ea fix: don't call setup_environment when not needed (#3060)
* Don't call setup_environment when not needed. fixes #3059

* setup_environment and modules: added unit tests
2017-02-10 16:09:43 -08:00
Denis Davydov
cbbf5791ba numdiff: update dependencies and fix (#3061)
compile with -O0 as per upstream known issue with optimization and GMP,
according to Ubuntu folks.
2017-02-10 16:05:07 -08:00
Justin M Wozniak
2305f6434e New package.py for ExM C-Utils and Turbine (#3076)
* New package.py for ExM C-Utils: An initial package dependency for Swift/T
* New package turbine

* Fix package.py as requested by @adamjstewart

* New package.py for ADLB/X: A 2nd package dependency for Swift/T

* Add latest version of GNU Parallel (#3106)

* Address formatting guidelines from @adamjstewart

* WIP on new Turbine package.py

* Formatting fixes

* Complete Turbine package.py
2017-02-10 16:03:40 -08:00
healther
c98249c129 Add version 2017.0.098 to ipp (#3093) 2017-02-10 16:00:52 -08:00
Erik Schnetter
4362caa51a es: Declare readline dependency (#3071) 2017-02-10 16:00:20 -08:00
Adam J. Stewart
57855cab5d Explicitly tell MPC where to find its deps (#3073) 2017-02-10 15:59:46 -08:00
healther
563b6ab73a Add version 2017.0.098 to intel-mkl (#3092) 2017-02-10 15:55:02 -08:00
healther
2aec15a6f9 Add version 2.49.7 to glib (#3089) 2017-02-10 15:52:39 -08:00
becker33
f9e3b58d7e Make distro more robust to unreadable files (#3110)
* Make distro more robust to unreadable files. Will upstream

* Comment for clarify
2017-02-10 10:23:04 -08:00
Adam J. Stewart
f1ca79ba6c Add latest version of PGI (#3107) 2017-02-09 13:58:17 -08:00
Denis Davydov
b07835904a valgrind: add develop; fix build on macOS with clang (#3066)
- add develop version to valgrind; fix build on macOS with clang
- switch valgrind to AutotoolsPackage
2017-02-09 13:57:50 -08:00