George Young
d846664165
paintor: new package @3.0 ( #40359 )
...
* paintor: new package @3.0
* Update var/spack/repos/builtin/packages/paintor/package.py
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-10-09 09:54:44 -07:00
Vanessasaurus
31b3e4898b
Add: flux-pmix 0.4.0 ( #40323 )
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* Automated deployment to update package flux-pmix 2023-10-05
* Pin exactly to flux-core 0.49.0 when between 0.3 and 0.4
* Update var/spack/repos/builtin/packages/flux-pmix/package.py
Co-authored-by: Mark Grondona <mark.grondona@gmail.com>
* Update var/spack/repos/builtin/packages/flux-pmix/package.py
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
---------
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
Co-authored-by: Mark Grondona <mark.grondona@gmail.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-10-09 09:29:18 -07:00
Harmen Stoppels
82f1267486
unparse: drop python 3.3 remnants ( #40331 )
2023-10-09 08:22:27 -07:00
Harmen Stoppels
19202b2528
docs: update Spack prerequisites ( #40381 )
2023-10-09 13:41:36 +00:00
Adam J. Stewart
831cbec71f
py-pydevtool: add new package ( #40377 )
2023-10-09 15:09:59 +02:00
Patrick Broderick
bb2ff802e2
fftx: add v1.1.3 ( #40283 )
2023-10-09 15:06:59 +02:00
dependabot[bot]
83e9537f57
build(deps): bump python-levenshtein in /lib/spack/docs ( #40220 )
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Bumps [python-levenshtein](https://github.com/maxbachmann/python-Levenshtein ) from 0.21.1 to 0.22.0.
- [Release notes](https://github.com/maxbachmann/python-Levenshtein/releases )
- [Changelog](https://github.com/maxbachmann/python-Levenshtein/blob/main/HISTORY.md )
- [Commits](https://github.com/maxbachmann/python-Levenshtein/compare/v0.21.1...v0.22.0 )
---
updated-dependencies:
- dependency-name: python-levenshtein
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-10-09 15:02:14 +02:00
Gavin John
3488e83deb
py-s3cmd: Add new versions ( #40212 )
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* Add new versions of py-s3cmd
* Use correct hashes
2023-10-09 07:46:38 -05:00
Jacob King
c116eee921
nimrod-aai: add v23.9. ( #40303 )
2023-10-09 14:39:40 +02:00
Adam J. Stewart
9cb291b41b
py-jsonargparse: add v4.25.0 ( #40185 )
2023-10-09 14:33:45 +02:00
Thomas Dickerson
c0f1072dc7
racket packages: fix typo after multiple build systems support ( #40088 )
2023-10-09 14:21:13 +02:00
Jordan Galby
3108036533
elfutils: fix +debuginfod again with new libarchive versions ( #40314 )
2023-10-09 14:17:58 +02:00
Mike Renfro
215c699307
velvet: improved variants ( #40225 )
2023-10-09 12:47:54 +02:00
jmuddnv
f609093c6e
Adding NVIDIA HPC SDK 23.9 ( #40371 )
2023-10-09 12:35:59 +02:00
Joe Schoonover
eb4fd98f09
feq-parse: add v2.0.3 ( #40230 )
2023-10-09 12:31:23 +02:00
Harmen Stoppels
08da9a854a
parser: use non-capturing groups ( #40373 )
2023-10-09 07:18:27 +02:00
Mark (he/his) C. Miller
3a18fe04cc
Update CITATION.cff with conf dates ( #40375 )
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Add `start-date` and `end-date` to citation
2023-10-08 18:04:25 -07:00
Harmen Stoppels
512e41a84a
py-setuptools: sdist + rpath patch backport ( #40205 )
2023-10-08 11:47:36 -06:00
Alex Richert
8089aedde1
gettext: Add static and pic options ( #37957 )
2023-10-08 17:42:21 +02:00
Manuela Kuhn
6b9e103305
py-tables: add 3.9.0 ( #40340 )
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* py-tables: add 3.9.0
* Add conflict with apple-clang
2023-10-08 10:28:13 -05:00
Jen Herting
00396fbe6c
[py-tokenizers] added version 0.13.3 ( #40360 )
2023-10-08 10:27:18 -05:00
Jen Herting
a3be9cb853
[py-tensorboardx] Added version 2.6.2.2 ( #39731 )
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* [py-tensorboardx] Added version 2.6.2.2
* [py-tensorboardx] flake8
* [py-tensorboardx] requires py-setuptools-scm
2023-10-08 10:21:55 -05:00
Jen Herting
81f58229ab
py-torch-sparse: add v0.6.17 ( #39495 )
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* [py-torch-sparse] New version 0.6.17
* [py-torch-sparse] added dependency on parallel-hashmap
* [py-torch-sparse]
- spack only supports python@3.7:
- py-pytest-runner only needed with old versions
2023-10-08 10:20:46 -05:00
Jen Herting
2eb16a8ea2
[py-lvis] New package ( #39080 )
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* [py-lvis] New package
* [py-lvis] flake8
* [py-lvis] os agnostic
* [py-lvis] added comment for imported dependency
* [py-lvis] style fix
2023-10-08 10:18:01 -05:00
Manuela Kuhn
9db782f8d9
py-bids-validator: add 1.13.1 ( #40356 )
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* py-bids-validator: add 1.13.1
* Fix style
2023-10-08 10:16:08 -05:00
Lydéric Debusschère
633df54520
[add] py-cylc-flow: new recipe ( #39986 )
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* [add] py-cylc-flow: new recipe
* py-cylc-flow: fix py-protobuf version
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-cylc-flow: fix py-colorama version
Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
* py-cylc-flow: Update dependence on py-aiofiles
Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
* py-cylc-flow: Update dependence on py-pyzmq
Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
* py-cylcflow: remove useless dependence
* py-cylc-flow: fix indent
* py-cylc-flow: fix argument in depends_on; move lines
* py-cylc-flow: fix the type of the dependence py-setuptools
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
Co-authored-by: LydDeb <lyderic.debusschere.tgcc@cea.fr>
2023-10-08 10:06:13 -05:00
Mark (he/his) C. Miller
e2a7f2ee9a
Update CITATION.cff ( #40363 )
...
You will note the `Cite this repository` link is not working.
This commit fixes the underlying file...
* `authors` was not indented
* `authors` required by `preferred-citation`
* `authors` list required at top level (I simply duplicated)
* `"USA"` not correct country code
* `month` requires an integer month number
* Added URL to the actual pdf of the cited paper
* Used `identifiers` for doi and LLNL doc number
* added `abstract` copied from paper
Various fixes were confirmed by `cffconvert` using `docker run -v `pwd`:/app citationcff/cffconvert --validate`
2023-10-07 17:44:31 -07:00
Massimiliano Culpo
28c49930e2
Remove warning for custom module configuration, when no module is enabled ( #40358 )
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The warning was added in v0.20 and was slated for removal in v0.21
2023-10-07 09:21:04 +02:00
Ken Raffenetti
6c1868f8ae
yaksa: add version 0.3 ( #40368 )
2023-10-06 22:28:15 -06:00
Massimiliano Culpo
4f992475f4
Python add v3.11.5 ( #40330 )
2023-10-06 18:03:00 -06:00
Alex Richert
7a358c9005
Change 'exit' to 'return' in setup-env.sh ( #36137 )
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* Change 'exit' to 'return' in `setup-env.sh` to avoid losing shell in some cases when sourcing twice.
2023-10-06 16:19:19 -07:00
Veselin Dobrev
b5079614b0
MFEM: add new version v4.6 ( #40170 )
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* [mfem] Initial changes for v4.6
* [@spackbot] updating style on behalf of v-dobrev
* [mfem] Set the proper download link for v4.6
2023-10-06 15:31:23 -07:00
Alex Richert
482525d0f9
Update bufr recipe ( #40033 )
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* Update bufr recipe
* Add v12.0.1
* style fixes
* remove test-related functionality for bufr
* Re-add testing
---------
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-10-06 15:04:51 -07:00
snehring
599220924d
wise2: adding new package wise2 ( #40341 )
2023-10-06 14:24:44 -07:00
Harmen Stoppels
d341be83e5
VersionRange: improve error message for empty range ( #40345 )
2023-10-06 14:19:49 -07:00
George Young
b027d7d0de
metal: new package @2020-05-05 ( #40355 )
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* metal: new package
* style
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-10-06 14:14:45 -07:00
Howard Pritchard
0357df0c8b
openmpi: add 4.1.6 release ( #40361 )
...
related to #40232
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-10-06 13:06:37 -07:00
Edward Hartnett
f70ae6e3c4
g2: updated for 3.4.8 release ( #40366 )
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* updated for 3.4.8 release
2023-10-06 13:02:17 -07:00
Manuela Kuhn
921ed1c21b
py-expecttest: new package ( #40347 )
2023-10-06 14:34:47 -05:00
Manuela Kuhn
c95d43771a
py-asttokens: add 2.4.0 ( #40349 )
2023-10-06 14:33:56 -05:00
Manuela Kuhn
db3d816f8b
py-argcomplete: add 3.1.2 ( #40348 )
2023-10-06 14:32:21 -05:00
Manuela Kuhn
1d6a142608
py-anyio: add 4.0.0 ( #40346 )
2023-10-06 14:27:53 -05:00
George Young
98271c3712
topaz: new package @0.2.5 ( #40352 )
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* topaz: new package @0.2.5
* switching over to pypi
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-10-06 13:00:03 -06:00
Manuela Kuhn
e3f6df884e
py-zipp: add 3.17.0 ( #40278 )
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* py-zipp: add 3.17.0
* Re-add python@3.7 dependency
2023-10-06 13:54:25 -05:00
Sam Gillingham
b0f36b2cd9
RIOS: add recent versions ( #40243 )
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* add recent versions of RIOS
* fix depends_on syntax
* fix typo
* fix sha and add parallel variant
* remove self
* try doing in one
2023-10-06 13:52:15 -05:00
Lydéric Debusschère
5524492e25
[add] py-metomi-rose: new recipe, required by py-cylc-rose ( #39981 )
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* [add] py-metomi-rose: new recipe, required by py-cylc-rose
* py-metomi-rose: remove version constraint on python
---------
Co-authored-by: LydDeb <lyderic.debusschere.tgcc@cea.fr>
2023-10-06 13:49:59 -05:00
Sam Gillingham
112f045352
py-tuiview: add recent versions of tuiview ( #40244 )
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* add recent versions of tuiview and remove Qt4 version
* reformat
* fix stray tabs
* add back a deprecated 1.1.7
* tabs
* more tabs
* reformat
* comma
2023-10-06 13:49:06 -05:00
Harmen Stoppels
72ed8711a7
unparse: drop python 2 remnants ( #40329 )
2023-10-06 09:42:47 -07:00
Harmen Stoppels
55e0c2c900
openssh: 9.5p1 ( #40354 )
2023-10-06 09:37:42 -07:00
Massimiliano Culpo
e20c05fcdf
Make "minimal" the default duplicate strategy ( #39621 )
...
* Allow branching out of the "generic build" unification set
For cases like the one in https://github.com/spack/spack/pull/39661
we need to relax rules on unification sets.
The issue is that, right now, nodes in the "generic build" unification
set are unified together with their build dependencies. This was done
out of caution to avoid the risk of circular dependencies, which would
ultimately cause a very slow solve.
For build-tools like Cython, however, the build dependencies is masked
by a long chain of "build, run" dependencies that belong in the
"generic build" unification space.
To allow splitting on cases like this, we relax the rule disallowing
branching out of the "generic build" unification set.
* Fix issue with pure build virtual dependencies
Pure build virtual dependencies were not accounted properly in the
list of possible virtuals. This caused some facts connecting virtuals
to the corresponding providers to not be emitted, and in the end
lead to unsat problems.
* Fixed a few issues in packages
py-gevent: restore dependency on py-cython@3
jsoncpp: fix typo in build dependency
ecp-data-vis-sdk: update spack.yaml and cmake recipe
py-statsmodels: add v0.13.5
* Make dependency on "blt" of type "build"
2023-10-06 10:24:21 +02:00
