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Author SHA1 Message Date
Ricardo Silva
5116312ca2 package/gromacs: simd optimizations autodetection for more versions (#12402) 
* gromacs: fix simd detection for pre 2018 versions

* pre 2018 the cmake file was named differently
* fixed up post 2018 patch file which was non pretty

* Trim patch
 2019-08-13 19:21:59 -05:00
健美猞猁
5429713eef Add version 2.4.0 for cantera. (#12405) 2019-08-13 19:18:38 -05:00
Gregory Lee
aabdeb9b63 patch opa-psm2 to build with spack wrappers (#12407) 2019-08-13 19:13:21 -05:00
Daryl W. Grunau
c931757d02 Fix package gpgme dependency (#12410) 
* bump eospac version

* Revert "bump eospac version"

This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.

* build depends on gnupg which provides gpgsm binary
 2019-08-13 19:08:50 -05:00
Michael Kuhn
384281bf94 gcc: Add 9.2.0 (#12411) 2019-08-13 19:08:12 -05:00
Tiziano Müller
95fec7adfc CP2K/SIRIUS: add support for building with CUDA, fix CP2K build with MKL (#11418) 
* cp2k/sirius: add CUDA support

* cp2k: fix building with MKL

* sirius: make sure to link against Spacks blas/lapack/scalapack
 2019-08-13 19:59:08 +02:00
brietzke
68c176998a new package: asagi: create package.py (#11931) 
* Create package.py

* applied reviewer suggestions

* Update package.py

* remove CamelCase from variant names

* add comment on why fetching package via git

* found typo in variant to cmake-argumentlist translation

* rename variants to ~nonuma ~nompi to be in sync with cmake-args, refine mpi@3-dependency definition

* Revert "rename variants to ~nonuma ~nompi to be in sync with cmake-args, refine mpi@3-dependency definition"

This reverts commit 58e8cf7d93c5665f0b4b50228946857734716cef.

* remove version-preference
 2019-08-13 11:13:41 -05:00
Sinan
bb6ec7fb40 Package/grass: fix iconv linking issue (#12165) 
* fix iconv linking issue, package_grass fix linking iconv, add more comments
 2019-08-12 13:45:05 -07:00
Owen Solberg
230678367c singularity: update version to 3.3.0 (#12295) 
* add checksum for singularity release 3.3.0

* update singularity doc URL

URL at the lbl.gov domain has message saying:
"This website is going away soon! Update your bookmarks!"

* add note about build log file for post-install step

* provide links to both 2.x and 3.x security docs

* remove whitespace.  Passing flake8 confirmed locally this time :)

* add TODO comment for fakeroot support
 2019-08-12 15:38:15 -05:00
Jean-Paul Pelteret
2cc89fbf69 New package: TexStudio (#12301) 
* Poppler library: Add new versions

* Poppler library: Allow building with QT4

* Poppler library: Install header files

* Add patch to Poppler package

* Add new package: TexStudio
 2019-08-12 14:48:28 -05:00
Russell J. Hewett
31f9135cbc blaze: converted to CMakePackage (#12357) 
The previous version does not properly install the required cmake
configuration files for blaze-lib, so find_package does not work
correctly.

This patch converts the blaze-lib package to use CMakePackage,
adds the required cmake dependency, and removes the install()
member function, which is not working correctly and is no longer
needed.
 2019-08-12 14:47:54 -05:00
Geoffrey Oxberry
6de750d860 gtksourceview: new package (#12387) 2019-08-12 14:44:54 -05:00
Janne Blomqvist
490168be4d openblas: fix target detection for cross-compiling (#12390) 
In a review of a previous pull request (
https://github.com/spack/spack/pull/10713 ) it was mentioned that the
proper way to figure out the target architecture is via
spec.architecture.target.  This patch fixes this for the openblas
package.

Signed-off-by: Janne Blomqvist <janne.blomqvist@aalto.fi>
 2019-08-12 14:43:04 -05:00
Janne Blomqvist
820b220b22 openblas@0.3.7: New version (#12391) 
This adds OpenBLAS 0.3.7 (released 2019-08-11).
 2019-08-12 14:41:26 -05:00
Kelly (KT) Thompson
5b84d6dff1 Apply xl patch for cce@9: to fix cmake. (#12392) 2019-08-12 14:41:00 -05:00
Daryl W. Grunau
9538889f1c packages/skopeo (#12348) 
* bump eospac version

* Revert "bump eospac version"

This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.

* new package: skopeo

* address flake8 issues

* address adamjstewart's comments

* use the Executable class and undocumented 'str' feature for output

* Package -> MakefilePackage

* add missing build phase

* patch -> edit phase
 2019-08-12 11:28:05 -05:00
Seth R. Johnson
172fcb0225 Update SWIG versions and add Fortran fork (#12185) 
* Add git repositories for SWIG and SWIG-Fortran

* Fix typo in documentation

* Move 'master' to top of SWIG version list
 2019-08-11 12:58:12 -05:00
Glenn Johnson
30cf665d16 Fix py-matplotlib build with Intel compiler (#12144) 
Not sure what happened between #5321 and now but the CC=CXX fix now
prevents py-matplotlib from building with the Intel compiler. I verified
with versions of py-matplotlib from 2.0.2 to 3.0.2 and intel-17.0.4 and
19.0.4 that py-matplotlib successfully builds with the Intel compiler
without that code.
 2019-08-11 12:57:31 -05:00
Seth R. Johnson
52a737affe Use correct GCC installation when installing clang with GCC (#12381) 2019-08-11 12:40:12 -05:00
Sinan
5532b8e617 new package: qwtpolar (#12382) 
* create qwtpolar package

* patch config files so that qwtpolar successfully builds

* make flake8 happy
 2019-08-11 12:39:58 -05:00
Frédéric Simonis
33bec18cc2 Add preCICE xSDK support (#12356) 
* Add preCICE xSDK support

* Cleanup generation of cmake arguments

* Generalize numpy include

* Fix python spec

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Fix numpy spec

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-08-11 12:19:44 -05:00
Adam J. Stewart
0d4114b095
Add NCCL 2.4.8-1 (#12362) 2019-08-10 11:53:29 -05:00
Adam J. Stewart
c5c1d1db43
Port py-poster to Python 3 (#12363) 
* Port py-poster to Python 3

* Forgot the patch
 2019-08-10 11:53:15 -05:00
Adam J. Stewart
e69456bde2
Add py-clipboard package (#12364) 2019-08-10 11:52:52 -05:00
Adam J. Stewart
6e14e74014
Add py-gee-asset-manager package (#12365) 2019-08-10 11:52:38 -05:00
Adam J. Stewart
889b625452
Add py-geeadd package (#12366) 2019-08-10 11:52:24 -05:00
Adam J. Stewart
8e4d60645f
Add py-geeup package (#12367) 2019-08-10 11:52:10 -05:00
Adam J. Stewart
706d57bd23
Add py-google-api-core package (#12368) 2019-08-10 11:51:56 -05:00
Adam J. Stewart
09e0f1ad4e
Add py-google-cloud-core package (#12369) 2019-08-10 11:51:41 -05:00
Adam J. Stewart
3c54e55546
Add py-google-cloud-storage package (#12370) 2019-08-10 11:51:27 -05:00
Adam J. Stewart
a3cc7eb4f7
Add py-google-resumable-media package (#12371) 2019-08-10 11:51:12 -05:00
Adam J. Stewart
b329d5f27f
Add py-googleapis-common-protos package (#12372) 2019-08-10 11:50:58 -05:00
Adam J. Stewart
fbf386328c
Add py-oauth2client package (#12373) 2019-08-10 11:50:43 -05:00
Adam J. Stewart
1d0f61816a
Add py-pathlib package (#12374) 2019-08-10 11:50:24 -05:00
Adam J. Stewart
37e59cbd7e
Add py-pyperclip package (#12375) 2019-08-10 11:50:10 -05:00
Adam J. Stewart
572bc5cc77
Add py-pysmartdl package (#12376) 2019-08-10 11:49:55 -05:00
Adam J. Stewart
3601f1c825
Add py-retrying package (#12377) 2019-08-10 11:49:41 -05:00
Adam J. Stewart
25b3946e0b
Add py-selenium package (#12378) 2019-08-10 11:49:25 -05:00
Sajid Ali
48016366c8 modified: var/spack/repos/builtin/packages/libflame/package.py (#12379) 2019-08-10 11:48:58 -05:00
Cameron Smith
a4a30de8a1 libconfig: add version 1.7.1 (#12324) 
* libconfig: add version 1.7.1

* move 1.7.1 above 1.6, latest version is preferred
 2019-08-10 11:08:53 -05:00
Seth R. Johnson
54018b488a Fix build for moab 4.9.2 on gcc8 (#12328) 
```
5 errors found in build log:
     609      CXX      mbpart.o
     610      CXX      quality.o
     611      CXX      umr.o
     612      CXX      merge.o
     613      CXX      parread.o
     614    mbpart.cpp: In function 'int main(int, char**)':
  >> 615    mbpart.cpp:494:19: error: no match for 'operator<<' (operand types
            are 'std::ostream' {aka 'std::basic_ostream<char>'} and 'std::ostri
            ngstream' {aka 'std::__cxx11::basic_ostringstream<char>'})
     616             std::cerr << tmp_output_file << " : failed to write file."
             << std::endl;
     617             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
     618    mbpart.cpp:494:19: note: candidate: 'operator<<(int, int)' <built-i
            n>
     619    mbpart.cpp:494:19: note:   no known conversion for argument 2 from
            'std::ostringstream' {aka 'std::__cxx11::basic_ostringstream<char>'
            } to 'int'
     620    In file included from /software/user_tools/centos-7.2.1511/cades-ns
            ed-spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbum
            ioobdbkw4rwfyn2givi4nyvwq/include/c++/8.2.0/iterator:64,
     621                     from /software/user_tools/centos-7.2.1511/cades-ns
            ed-spack/var/spack/stage/moab-4.9.2-77uuzmj4ofb7z7vz6m25sftyks7p5do
            7/spack-src/src/moab/Range.hpp:167,

     ...

     886    /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
            ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
            vwq/include/c++/8.2.0/ostream:682:5: note: candidate: 'template<cla
            ss _Ostream, class _Tp> typename std::enable_if<std::__and_<std::__
            not_<std::is_lvalue_reference<_Tp> >, std::__is_convertible_to_basi
            c_ostream<_Ostream>, std::__is_insertable<typename std::__is_conver
            tible_to_basic_ostream<_Tp>::__ostream_type, const _Tp&, void> >::v
            alue, typename std::__is_convertible_to_basic_ostream<_Tp>::__ostre
            am_type>::type std::operator<<(_Ostream&&, const _Tp&)'
     887         operator<<(_Ostream&& __os, const _Tp& __x)
     888         ^~~~~~~~
     889    /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
            ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
            vwq/include/c++/8.2.0/ostream:682:5: note:   template argument dedu
            ction/substitution failed:
     890    /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
            ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
            vwq/include/c++/8.2.0/ostream: In substitution of 'template<class _
            Ostream, class _Tp> typename std::enable_if<std::__and_<std::__not_
            <std::is_lvalue_reference<_Tp> >, std::__is_convertible_to_basic_os
            tream<_Ostream>, std::__is_insertable<typename std::__is_convertibl
            e_to_basic_ostream<_Tp>::__ostream_type, const _Tp&, void> >::value
            , typename std::__is_convertible_to_basic_ostream<_Tp>::__ostream_t
            ype>::type std::operator<<(_Ostream&&, const _Tp&) [with _Ostream =
             std::basic_ostream<char>&; _Tp = std::__cxx11::basic_ostringstream
            <char>]':
     891    mbpart.cpp:494:22:   required from here
  >> 892    /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
            ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
            vwq/include/c++/8.2.0/ostream:682:5: error: no type named 'type' in
             'struct std::enable_if<false, std::basic_ostream<char>&>'
     893      CXXLD    mbdepth
     894      CXXLD    hexmodops
  >> 895    make[2]: *** [mbpart.o] Error 1
     896    make[2]: *** Waiting for unfinished jobs....
     897    make[2]: Leaving directory `/localscratch/tmp/s3j-spack/spack-stage
            /spack-stage-NT13kT/spack-src/tools'
  >> 898    make[1]: *** [all-recursive] Error 1
     899    make[1]: Leaving directory `/localscratch/tmp/s3j-spack/spack-stage
            /spack-stage-NT13kT/spack-src/tools'
  >> 900    make: *** [all-recursive] Error 1
```
 2019-08-10 11:08:13 -05:00
Adam J. Stewart
f9e6f0fb62
py-numexpr: switch from PyPI to GitHub download (#12360) 2019-08-09 22:27:34 -05:00
Ricardo Silva
c5849ce04f gromacs: fix CPU optimizations detection (simd=auto) (#12354) 
* SL-637
* https://redmine.gromacs.org/issues/2927
* tested with cmake 3.14.4 and 3.15.1
 2019-08-09 21:38:16 -05:00
Russell J. Hewett
7cc57d74e4 Updated Blaze version 3.5 and added access to master branch (#12341) 
* blaze: added version 3.5

* blaze: added access to bleeding edge
 2019-08-09 21:32:54 -05:00
Cameron Stanavige
13112d6b1c flatcc: add version 0.5.3 (#12358) 
This updates the flatcc package to have the latest version.
 2019-08-09 21:32:10 -05:00
Geoffrey Oxberry
28ffc1a4b9 gnome-common: new package (#12359) 2019-08-09 21:31:47 -05:00
Geoffrey Oxberry
92c65f3150 Add new package: libfive@master (#12334) 2019-08-09 18:10:00 -05:00
Toyohisa Kameyama
b54576abaf sdl2: fix dependency for libxext and build on ARM (#12351) 
1. add dependency for libxext2.
2. SSEMATH is off is aarch64.
3. reformat comment for flake8.
 2019-08-09 10:24:16 -05:00
Sean McGrath
74fe729be2 New Plink beta version (#12352) 
* Plink 1.9 Beta 6.10 added

* Typo Fix
 2019-08-09 10:22:18 -05:00
Sinan
a999092a93 newpackage/tippecanoe (#12319) 
* newpackage/tippecanoe

* make flake8 happy

* add "r" for raw text
 2019-08-09 10:18:26 -05:00