Commit graph

15979 commits

Author SHA1 Message Date
Michael Kuhn
f7008f37d4 slurm: Fix build with gcc@10:
gcc@10: defaults to -fno-common, which breaks slurm up to version
20-02-1. For more details, see https://gcc.gnu.org/gcc-10/porting_to.html
2020-06-17 13:42:00 -07:00
Sergey Kosukhin
01b277ad0f
openmpi: options for local transport (#16831) 2020-06-17 14:41:24 -05:00
Chris White
506f31b7a7
axom conduit mfem build fixes (#17121)
* honor global compiler flags

* Honor debug variant when using global compiler flags

* Add cppflags to c/cxx flags, clarify flag handling
2020-06-17 12:43:47 -05:00
vvolkl
03880f5413
Split hepmc Into hepmc and hepmc3 (#16892) 2020-06-17 12:13:27 -05:00
Michio Ogawa
ad18933ef4
FrontISTR: various updates to the package (#17089)
* Added maintainers
* Refined dependencies
* Changed git url
2020-06-17 17:45:51 +02:00
Sergey Kosukhin
eca08c77e3
openmpi: fixes for NAG compiler (#17073)
* openmpi: fixes for NAG compiler

* openmpi: more fixes
2020-06-17 10:32:08 -05:00
Seth R. Johnson
e90c229dab
Fix/clarify some trilinos variants/dependencies (#17006)
- Parallel HDF5 isn't required -- the comment seems to be about a
  transitive dependency with pnetcdf.
- Boost usage should respect the variant, not automatically be reenabled
  when choosing DTK.
2020-06-17 09:34:53 -05:00
takanori-ihara
eb5f1886b7
py-tensorflow: Update for use with Fujitsu compiler (#17088)
* py-tensorflow: Update for use with Fujitsu compiler

* py-tensorflow: remove -march option

* fix flake8 error
2020-06-17 08:00:36 -05:00
darmac
dc0dfe9220
New package: lynx (#17099) 2020-06-16 23:04:00 -07:00
Muhammad Haseeb
d2b745b3d6
lua: requires -ltermcap when building (#17108) 2020-06-16 22:55:46 -07:00
Fabian Brandt
494a523636
libnetworkit: add version 7.0 (#17111) 2020-06-16 22:44:43 -07:00
Ryan Mast
0c28d8932f helics: Add version 2.5.2 2020-06-16 22:43:27 -07:00
Seth R. Johnson
93fcca900f
vecgeom: add version 1.1.7 (#17120) 2020-06-16 22:42:56 -07:00
h-denpo
fd8971feec
Modified for Fujitsu compiler. (#17124) 2020-06-16 22:36:08 -05:00
Glenn Johnson
8e6f0c353c
Add patch for older versions of py-tensorflow (#17122)
Versions of py-tensorflow between versions 1.1 and 1.14 need a patch to
avoid an import error on the cloud package even if built without support
for the cloud package.
2020-06-16 22:35:03 -05:00
Toyohisa Kameyama
6e467d13a4
mxnet: avoid GNU parallel shuffle without openmp. (#17095) 2020-06-16 22:24:38 -05:00
takanori-ihara
b0c73c3325
bazel: Update for use with Fujitsu compiler (#16860)
* bazel: Update for use with Fujitsu compiler

* bazel: Fix for use with Fujitsu compiler

* bazel: Fix flake8 error

* bazel: add conflicts setting for use with Fujitsu compiler

* fix flake8 error

* fix flake8 error
2020-06-16 22:18:04 -05:00
takanori-ihara
84e117b497
Add compiler option to use with Fujitsu compiler (#17067)
* Add compiler option to use with Fujitsu compiler

* Fix flake8 error

* remove 1-1_fcc_tf_patch.patch

* fix flake8 error
2020-06-16 21:59:20 -05:00
Axel Huebl
896a14af82
Doc: E4S Build Cache Link (#16986)
Link to the E4S build cache in the according section of the docs.
2020-06-16 15:53:34 -07:00
Geoffrey Oxberry
4652b217cf
pango: add libffi, glib, and other dependencies (#12384) 2020-06-16 15:34:18 -07:00
Andrew W Elble
ff816f76b3
ruby: add version 2.7.1 (#17112) 2020-06-16 21:35:49 +02:00
Tom Payerle
4a948060cf
VTK: add version 9.0.0; update Python dependency constraints (#17019)
In Python 3.8, the reserved "tp_print" slot was changed from a function
pointer to a number, which broke the Python wrapping code in vtk@8
(causing "cannot convert 'std::nullptr_t' to 'Py_ssize_t'" errors in
various places).  This is fixed in vtk@9.0.0.

This patch:

1) adds vtk@9.0.0
2) updates depends_on constraints to only use python@3.8: for vtk@9:
   vtk@:8 depends on python@2, and vtk@8.0.1:8.9.9 depends on python@:3.7
3) Adds CMake flag VTK_PYTHON_VERSION=3 when using python@3 with vtk@9
2020-06-16 11:33:35 -07:00
psakievich
dc31afe67d
Yaml spec parsing corner case (#17101)
* Catch yaml filename corner case in spec parser

* improved regex and remove redundant error checking

Co-authored-by: Gregory Becker <becker33@llnl.gov>
2020-06-16 13:27:33 -05:00
Omar Padron
e816b66c94
fix docker image entrypoints (#17105)
Also removes extraneous prompt and ssh handling logic.
2020-06-16 14:11:13 -04:00
Joseph Ciurej
0095c4c25c
python: fix distutils for python modules (e.g. matplotlib) with C and C++ source files (#16856)
* python: adding a distutils fix to improve build compatibility for C++ extension modules (e.g. py-matplotlib)

* python: added C/C++ distutils patches for python@3.6:3.8
2020-06-16 12:45:36 -05:00
Tomoki, Karatsu
4b48f70393
gobject-introspection: build sequentially when using the Fujitsu compiler. (#17092) 2020-06-16 14:51:29 +02:00
victorusu
0f484380f5
reframe: fix package bugs with v3.0 (#17104)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-16 13:49:47 +02:00
vvolkl
e28561241b
ROOT: set LD_LIBRARY_PATH when ~rpath (#16899)
Allow Spack to build with ROOT as an external dependency by setting
LD_LIBRARY_PATH: given that the external package was not built by
Spack, dependents would not be able to locate libraries using RPATHs
when running ROOT binaries.
2020-06-15 23:31:41 -07:00
darmac
9f73e60ba9
Add new package: lzop (#17098) 2020-06-16 08:28:44 +02:00
John Jolly
8882dc0d96 chill: Update dependency versions
Specified Python to be v2.7 only, as Python3 support is not currently
implemented in chill.

Update chill dependency versions for the following libraries to the
specific versions:

* rose:  v0.9.13.0
* bison: v3.4.2

Both rose and iegenlib are build time dependencies, but are also run
time dependencies. Added 'run' to the build type for both dependencies.
2020-06-15 23:08:34 -07:00
Sergey Kosukhin
a492187973
hdf5: fix libtool files (#17009) 2020-06-15 23:05:46 -07:00
Andrew W Elble
7e322b3184
CUDA: remove preexisting log file before install (#17018)
cuda: 10.1 and onward, installers will crash if /tmp/cuda-installer.log
exists

Try to help if user owns the file, otherwise try to provide useful
info. Clean up the file post-install to try to avoid the whole issue.
2020-06-15 22:57:00 -07:00
Jen Herting
d4f0a8f70b
[py-torchvision] added dependency of ffmpeg (#17032)
* [py-torchvision] added dependency of ffmpeg

* [py-torchvision] needs ffmpeg >= 3.1. See: https://github.com/pytorch/vision/issues/1597

* [py-torchvision] ffmpeg dependency is only for py-torchvision versions >= 0.4.2.
2020-06-15 22:46:35 -07:00
Amjad Kotobi
0111f2932f
pcre2: add version 10.35; JIT support (#17037) 2020-06-15 22:44:04 -07:00
Jose E. Roman
f54c9ae305
SLEPc: added v3.13.3 (#17085) 2020-06-16 06:25:30 +02:00
Kai Torben Ohlhus
e8fc7871da
openblas: added v0.3.10. (#17086)
[OpenBLAS 0.3.10](https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.10) was released.
2020-06-16 06:22:48 +02:00
Sinan
06c06a5665
arrayfire: added new package at v3.7.0 (#15598)
Co-authored-by: Sinan81 <Sinan81@github>
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-16 06:15:50 +02:00
darmac
6f07f8ae3e
netdata: added new package at v1.22.1 (#17094) 2020-06-16 06:08:45 +02:00
darmac
d1aa54115c
cyrus-sasl: added new package at 2.1.27 (#17096) 2020-06-16 06:00:53 +02:00
darmac
70be1038fd
memtester: added new package at v4.3.0 (#17097) 2020-06-16 05:59:31 +02:00
Miroslav Stoyanov
32558525f6
heffte: added v1.0 (#17102) 2020-06-16 05:44:47 +02:00
David Beckingsale
cb028aaf12
Update master to main for RAJA and Umpire (#17107) 2020-06-16 05:35:23 +02:00
h-denpo
01d9063bb1
ffb: prevent the architecture to be always "x86_64" (#17093) 2020-06-16 05:29:35 +02:00
Todd Gamblin
e5066664ab
README: Update LLNL release number to Apache-2.0/MIT version (#17109)
The release number in the README had not been updated since we did the
relicense to Apache-2.0 OR MIT in v0.12.0. LLNL-CODE-811652 is Spack's
new LLNL release number.
2020-06-15 17:10:49 -07:00
Matthias Diener
24ff34335b
dateutils: add version 0.4.7 (#17106) 2020-06-15 22:50:56 +02:00
Itaru Kitayama
eb26b4666f
Add 4.5 release to cubelib (#17090) 2020-06-15 15:21:35 -05:00
Massimiliano Culpo
5fc88a7c65
Skip failing test on MacOS (#17072)
* Skip failing test on MacOS

* Update setup-python action and unpin coverage
2020-06-15 13:24:56 -05:00
darmac
6c2e14dfca
grafana: added new package at v6.7.3 (#16788) 2020-06-15 15:56:29 +02:00
Sinan
1501de59ed
Package/py-lmfit: add new version (#16975)
* save edits

* tidy up

* Update var/spack/repos/builtin/packages/py-lmfit/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* add python version constraints

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Sinan81 <Sinan81@github>
2020-06-14 08:36:10 -05:00
Mark W. Krentel
aa50c2c7d0
hpctoolkit: add version 2020.06.12 (#17081)
Add versions 2020.06.12 and develop.
Switch default for variant papi to true.
2020-06-13 09:01:42 -05:00