Commit graph

5849 commits

Author SHA1 Message Date
Erik Schnetter
55e1550a59 openblas: Run tests only when requested (#3370)
The tests fail on some systems (e.g. Comet at SDSC) that impose limits on the number of processes or threads one can run simultaneously on the head node. Thus the tests should not be run by default.
2017-03-05 12:29:02 -06:00
Barry Smith
00d6cb9a8f Fixes veclibfort which was broken by PR1875 (#3368)
Funded-by: IDEAS
Project: IDEAS/xSDK
Thanks-to: Adam J. Stewart
2017-03-05 07:34:38 -06:00
healther
a7bab8a418 add package py-py-cpuinfo (#3339)
* add package py-py-cpuinfo

* renamed package to py-cpuinfo
2017-03-04 20:12:37 -06:00
Adam J. Stewart
a2d70a45fb Allow find_libraries to accept lists or strings (#3363)
* Allow find_libraries to accept lists or strings

* Convert one more example from list to string
2017-03-04 11:23:57 -06:00
Massimiliano Culpo
192a4b30f0 atlas: added a missing property decorator (#3366) 2017-03-04 10:24:48 -06:00
Denis Davydov
a36ed7fb9b fix blas/lapack usage after PR 1875 (#3365) 2017-03-04 09:42:02 -06:00
serbanmaerean
c3ac86310e ADIOS: change subclassing from Package to AutotoolsPackage (#3230)
* ADIOS: change the invocation of python script that generates test files

The python script ADIOS*/utils/gpp/gpp.py is invoked directly in the
ADIOS*/tests/genarray/Makefile and the name of the python interpreter
can be quite long if it is one built under spack, i.e. longer than the
80 characters allowed by the #! line in bash.  The name of the shbang
line is truncated at 80 characters and bash cannot find the python
interpreter specified.

This fix changes how the script is executed, by invoking it under
python. This way, the shbang line is ignored.

* adios: fixed flake8 errors from previous commit.

* adio: Switch to AutotoolsPackage class from Package class

Switched in order to add support for the ppc64le platform.
2017-03-04 07:53:50 -06:00
Jon Rood
0c1441c3e3 Using fPIC in PERL when using an Intel compiler. (#3355) 2017-03-04 07:50:38 -06:00
Adam J. Stewart
d52ac82f95 Convert gl2ps to CMakePackage (#3360)
* Convert gl2ps to CMakePackage

* Remove unused spec variable
2017-03-04 07:49:57 -06:00
Erik Schnetter
3e4fced7d8 ncurses: Work around an awk bug (#3361) 2017-03-04 07:49:12 -06:00
healther
1e6871add1 correct ipython dependency (#3332)
* correct ipython dependency

* needed to introduce a github download for py-jedi

* corrected dependencies

* restrict appnope dependency to darwin>10.8

* flake8 fix
2017-03-04 07:45:07 -06:00
healther
16c08fb5b3 add package py-junit-xml (#3336)
* add package py-junit-xml

* Update package.py

* flake8 fix
2017-03-04 07:44:36 -06:00
eklee15
c4e7cfe02b Added magma package (#3273)
* Added magma package

* Incorporated Serban's change

* Removed cmake dependency
2017-03-03 21:37:29 -06:00
healther
f34cd4be2b add package py-neo and py-quantities (#3337)
* add package py-neo and py-quantities

* Update package.py

* fixed errors
2017-03-03 21:34:20 -06:00
healther
ec81643906 add package py-pyminifier (#3340) 2017-03-03 21:34:04 -06:00
healther
b6ebfdaa60 add package py-serial (#3341)
* add package py-serial

* fixed setuptools dependency
2017-03-03 21:33:48 -06:00
healther
16e77086e0 add package py-pyfftw (#3342)
* add package py-pyfftw

* Update package.py
2017-03-03 21:33:31 -06:00
Adam J. Stewart
e7b019bf48 Revert "Make libgcc_s relocatable on Macos by adding @rpath to installname" (#3349) 2017-03-03 21:32:44 -06:00
Denis Davydov
003e841016 openblas: fix flags (#3344) 2017-03-03 19:30:35 -06:00
Andrew Holler
1cf8dbd200 features/highwayhash (#3242)
* Adding highwayhash package from Google

* Added the highwayhash package for Tensorflow

* Fixed the numerous flake8 issues

* fixed requested changes

* added conditionals for some installs

* forgot an import

* create install directories before you install anything in them
2017-03-03 19:00:43 -06:00
healther
8333c56ab8 add versions to package py-pandas (#3338) 2017-03-03 16:35:04 -06:00
Adam J. Stewart
678603f3cc scipy build fails when built in parallel (#3275) 2017-03-03 16:31:03 -06:00
Joschka Lingemann
7ef95767ee Fix error raised for multiple virtual packages. (#3306) 2017-03-03 16:30:32 -06:00
Erik Schnetter
37eb59622d opencoarrays: Correct download url, update version (#3322) 2017-03-03 16:29:56 -06:00
健美猫
9ec148e484 Add package sga. (#3330) 2017-03-03 16:28:34 -06:00
healther
dfbe3278c4 add package py-lmfit (#3333)
* add package py-lmfit

* needed to deactivate testing in openblas due to spec.cppflags being undefined

* undid openblas modification
2017-03-03 16:27:32 -06:00
healther
7dff5e7646 add package py-myhdl (#3335)
* add package py-myhdl

* Update package.py
2017-03-03 16:27:14 -06:00
Adam J. Stewart
897d0f3f3e Fix unexpected keyword error in Python 2.6 (#2954) 2017-03-03 15:24:44 -06:00
健美猫
d63a53e691 Fix simul by diabling inline and replacing mpicc command. (#3323) 2017-03-03 10:19:17 -06:00
healther
191bf1e132 add package py-elephant (#3302)
* add package py-elephant

* add variants for docs and pandas
2017-03-03 08:39:06 -06:00
healther
ba21940409 add resource manpages to package git (#3299)
* add resource manpages to package git

* Update package.py

* added manpages per version

* added explaining comment

* fixed synatx error
2017-03-03 08:07:50 -06:00
healther
def42f156d add flex variant to cscope (#3252)
* add flex variant to cscope

* fixed dependency

* fixed typo
2017-03-03 08:06:25 -06:00
健美猫
9df2649d02 Add package mdtest. (#3303) 2017-03-03 08:05:16 -06:00
健美猫
f443490f34 Add package sctk. (#3325) 2017-03-03 08:04:01 -06:00
健美猫
e4a0d8a78e Add packag gradle. (#3326) 2017-03-03 08:02:32 -06:00
healther
bb997d2de5 add package py-spyder (#3312)
* add package py-spyder

* fixed dependencies

* py-flake8 -> py-pycodestyle

* fixed packagename

* Update package.py

* Update package.py
2017-03-03 08:01:20 -06:00
healther
818118c589 add package py-qtawesome (#3308)
* add package py-qtawesome

requires py-qtpy

* fixed url

* remove unnecessary comment
2017-03-03 08:00:21 -06:00
healther
2d395d7d75 add package py-qtpy (#3307)
* add package py-qtpy

* (re)added qt dependence

* changed url
2017-03-03 08:00:01 -06:00
healther
ac0fa0ca6e add package py-numpydoc (#3311)
* add package py-numpydoc

* removed unnecessary dependency

* added dependency
2017-03-03 07:59:28 -06:00
健美猫
7511c9cd1a Add a new version for bamtools 2.4.1. (#3328) 2017-03-03 07:58:41 -06:00
healther
15c311fbeb add package notmuch and dependencies (#3329)
* add package notmuch and dependencies

depends on
* gmime

* flake8 again
2017-03-03 07:57:47 -06:00
healther
4494233c93 add package gmime (#3327)
* add package gmime

* flake8 fix..
2017-03-03 07:57:15 -06:00
Adam J. Stewart
7fcd414050 Fixes to allow Boost to build with Python 3 (#3293)
* Fixes to allow Boost to build with Python 3

* Restrict patch to Python 3 only
2017-03-02 18:36:10 -06:00
Adam J. Stewart
bde0a67415 Add new package for PaGMO/PyGMO (#3210)
* Add new package for PaGMO/PyGMO

* Rename py-pygmo to pagmo

* Fix concretization bug

* Correct Python detection, use correct flags

* Install PyGMO to the pagmo prefix, not the Python prefix
2017-03-02 18:35:19 -06:00
Federico Padua
ecca9abc72 Ior package: fix build issues (#3276)
This commits address build issues reported in issue #3268.
In particular, makes cleaner the dependency on parallel-netcdf
when +ncmpi variant is requested and adds CFLAGS=-D H5_USE_16_API
to handle the fact that Ior uses old 1.6 style APIs when +hdf5 is
requested.
These changes make Ior build fine and create modules for HDF5 versions
1.8.x and 1.10.0.
Even though build is successfull the modules haven't been tested in a
run.
2017-03-02 18:33:36 -06:00
Adam J. Stewart
a7be0d4e5d Convert icu4c to AutotoolsPackage (#3316) 2017-03-02 18:32:04 -06:00
Patrick Gartung
4afb7a729c Make libgcc_s relocatable on Macos by adding @rpath to installname (#1671)
* Make libgcc_s relocatable

* spack specifies full path to lib64

* don't need trailing /

* setting rpath is different on macos

* add -headerpad_max_install_names linker options

* formatting fixes

* Add Adam's recommendation
2017-03-02 16:39:05 -06:00
healther
7baefa83b9 add package py-jedi (#3313) 2017-03-02 16:29:01 -06:00
healther
c67b8173e3 add package py-rope (#3314) 2017-03-02 16:28:42 -06:00
healther
a562d684b7 add various variants to vim (#3255)
* add various variants to vim

* default to --enable-fail-if-missing

* vim package: -{python,ruby,lua,perl} sets build option to `no`

* vim's interpreter build options are `--enable-XXXXinterp={yes,no,dynamic}`
* dynamic seems to work only on windows builds
* `=no` is the default => use it in spack if the variant is disabled
2017-03-02 14:26:52 -06:00