* Add rewrite of spack checksum to include --verify and better add versions to package.py files
* Fix formatting and remove unused import
* Update checksum unit-tests to correctly test multiple versions and add to package
* Remove references to latest in stage.py
* Update bash-completion scripts to fix unit tests failures
* Fix docs generation
* Remove unused url_dict argument from methods
* Reduce chance of redundant remote_versions work
* Add print() before tty.die() to increase error readablity
* Update version regular expression to allow for multi-line versions
* Add a few unit tests to improve test coverage
* Update command completion
* Add type hints to added functions and fix a few py-lint suggestions
* Add @no_type_check to prevent mypy from failing on pkg.versions
* Add type hints to format.py and fix unit test
* Black format lib/spack/spack/package_base.py
* Attempt ignoring type errors
* Add optional dict type hint and declare versions in PackageBase
* Refactor util/format.py to allow for url_dict as an optional parameter
* Directly reference PackageBase class instead of using TypeVar
* Fix comment typo
---------
Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
* py-cupy updates: add +rocm and +all
* rocm deps are link only
* set parallelism for both +rocm and +cuda
* add missing deps; remove unnecessary deps; uncomment maintainers; get hipcc properly
* py-rdflib: add 6.3.2
* Update var/spack/repos/builtin/packages/py-rdflib/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Remove python dependency
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add recipe for py-hostlist
* Fix style
* Fix style
* Add homepage, fix version url and remove unnecessary dependency
* Fix version and remove url
* Rename package and fix git link
---------
Co-authored-by: Marc Schouler <marc.schouler@inria.fr>
* sourmash: new package @4.8.2
* sourmash: new package @4.8.2
* py-bitarray: add 2.7.6, 2.7.4
* Update var/spack/repos/builtin/packages/py-bitstring/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update setuptools dependency
* Adding missing deps
* Update var/spack/repos/builtin/packages/sourmash/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Correcting maturin dep
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/sourmash/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/sourmash/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/sourmash/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Adding dependency types
* Add `@0.14.17` as the last pre-`@1:` release
* Switch to use `python_platlib`
* Update package.py
* Update var/spack/repos/builtin/packages/py-screed/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Adding optional hip test
* Modifications to run every samples test
* Skipping test directories without a Makefile
* fix styling and cleaning code
* fix styling and changed method of itterating through sample folders
* changed to new syntax for standalone tests
* Updates for changes in syntax
Currently lm-sensors defaults to the compiler specified in the Makefile
(gcc) rather than the one specified in the spec. This patch appends the
CC flag to the make invocation with the spec compiler to fix this
behavior.
* initial commit for rocm-5.5.0 release
* fix the hipsparse build error for 5.5.0
* fix build error for amrex .add hiprand as a dependency
* modify the patch for rocprofiler-dev
* add hiprand for +rocm build
* initial commit for rocm-5.5.1 release
* bump up the version for rocm-5.5.1 release.
* bump up the version for rocmlir.miopen to use this backend only till 5.5
* add new recipe py-barectf and add it as dependency for rocprofiler-dev
* revert the changes for rocprofiler-dev for 5.5.0/1 for now as it depends
on hsa-amdaqlprofile.so which is a closed source and no spack recipe is
available for now.
* add rocm-core as dependency for rocm packages from 5.5.0 onwards
* avoid download of the gtest for building unit tests
* feature (packages): implement `odgi` package
This commit re-implements odgi package (superseded by #38741)
* fix (packages): remove redundant `requires()` from odgi package
This commit removes redundant use of `requires()` for gcc version in the `odgi` package
libelf fails to build with clang16+ due to Wimplicit-int and
Wimplicit-function-declarations becoming errors by default. This breaks
the configuration stage, so no build takes place. This patch fixes this
by passing -Wno-error=implicit-int and
-Wno-error=implicit-function-declarations as cflags.
gcoff uses the register keyword in a couple different places which
causes errors when building with c++17, which is the default in clang
16. This patch adds the -Wno-register flag to ignore these errors when
when building with clang 16.
Clang 16's change to erroring out by default on implicit function
declarations and implicit integers causes the build script for unzip to
break. Since this project hasn't had a release since 2010, we need to
patch it downstream/pass additional flags to get the build to succeed.
