Matthew Thompson
af3dba8db6
Update gftl, gftl-shared, fargparse, pfunit, yafyaml, pflogger ( #35119 )
2023-01-26 07:06:05 +01:00
eugeneswalker
08a24b5e03
trilinos@14: conflicts with cxxstd=14 ( #35164 )
2023-01-25 20:33:44 -08:00
Adam J. Stewart
65fbc5a461
py-sphobjinv: add v2.3.1 ( #35044 )
2023-01-25 14:09:00 -08:00
Adam J. Stewart
80f3888cc8
py-pytorch-lightning: add +extra variant ( #35121 )
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* py-pytorch-lightning: add +extra variant
* Update dependencies
* py-fsspec: add v2023.1.0
2023-01-25 15:58:26 -06:00
Christopher Christofi
5845750a10
perl-math-symbolic: add 0.612 ( #35145 )
2023-01-25 13:25:49 -08:00
Michael Kuhn
c529a0fddf
qperf: add verbs support ( #35147 )
2023-01-25 13:20:55 -08:00
Adam J. Stewart
d7265d7ddc
py-cligj: add v0.7.2 ( #35149 )
2023-01-25 13:17:20 -08:00
Adam J. Stewart
df0be87ada
py-pycocotools: add v2.0.6 ( #35150 )
2023-01-25 13:14:21 -08:00
Adam J. Stewart
af2aeb275f
py-scikit-learn: add v1.2.1 ( #35152 )
2023-01-25 13:10:57 -08:00
Richard Berger
4fef0bac20
spiner: add v1.6.0 ( #35154 )
2023-01-25 13:08:16 -08:00
Loïc Pottier
b32a07bbe1
amqp-cpp: added RabbitMQ C++ API ( #35156 )
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Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
2023-01-25 13:05:32 -08:00
Sebastian Ehlert
8709dbc232
Add Orca version 5.0.3-f.1 ( #35157 )
2023-01-25 12:18:46 -08:00
Christopher Christofi
54b9e3ce07
py-colorlover: new package with version 0.3.0 ( #35144 )
2023-01-25 11:36:43 -06:00
Sebastian Ehlert
d35c24a3ed
Add packages for scine modules ( #34969 )
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* Add packages for scine modules
- lbfgspp (dependency for scine-utilities)
- scine-core
- scine-utilities and py-scine-utilities (virtual)
- scine-readuct and py-scine-readuct (virtual)
- scine-sparrow and py-scine-sparrow (virtual)
- scine-database and py-scine-database (virtual)
- scine-molassembler and py-scine-molassembler (virtual)
- scine-xtb and py-scine-xtb (virtual)
- py-scine-chemoton
- py-scine-puffin
* Fix line-length for flake8
* Remove virtual dependencies
* Update detection of boost, minor fixes in packages / dependencies
* Correctly declare build-only dependencies, add git versions
* Add sparrow dummy packages, fix dependencies
* Rename latest version from develop to master
* Restore original sparrow package
* Also rename latest version for chemoton and puffin
2023-01-25 11:33:37 -06:00
Matthias Wolf
d4d200952e
py-flatten-dict: require poetry to build. ( #35122 )
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* py-flatten-dict: require poetry to build.
The sources seem to contain a bundled, auto-generated `setup.py`.
Building with `pip` insist on using Poetry as mentioned in
`pyproject.toml`, so require it as a build dependency.
* Update var/spack/repos/builtin/packages/py-flatten-dict/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-flatten-dict/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-25 11:33:04 -06:00
Erik Heeren
902a40bf72
py-lazy: add 1.4 and 1.5 ( #35124 )
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* py-lazy: add 1.4 and 1.5
* py-lazy: add url_for_version
2023-01-25 11:24:50 -06:00
Thomas Bouvier
a2d51cd4db
Add package py-continuum ( #35082 )
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* Add package `py-continuum`
* `py-continuum`: missing `py-pytest-mock` dependency
* `py-continuum`: add missing python dependency
* [@spackbot] updating style on behalf of thomas-bouvier
* Patch to remove useless `prospector` package
* Link to original PR
Co-authored-by: thomas-bouvier <thomas-bouvier@users.noreply.github.com>
2023-01-25 11:23:35 -06:00
Erik Heeren
f8e433689a
py-pyspark: new versions ( #35129 )
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* py-pyspark: new versions
* py-py4j: new versions
* py-py4j: more style
* py-py4j: even more style
* py-spark, py4j: review remarks
2023-01-25 11:22:43 -06:00
Harmen Stoppels
5f8c09fd33
Print file summary on checksum validation failure ( #35161 )
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Currently we print "sha256 checksum failed for [file]. Expected X but
got Y".
This PR extends that message with file size and contents info:
"... but got Y. File size = 123456 bytes. Contents = b'abc...def'"
That way we can immediately see if the file was downloaded only
partially, or if we downloaded a text page instead of a binary, etc.
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-01-25 15:02:41 +00:00
Harmen Stoppels
8eb4807615
libxc: 6.1.0 ( #35159 )
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Currently 6.0.0 fails on develop about incorrect shasum, but I can't
reproduce; maybe the download was temporarily unavailable.
2023-01-25 14:12:59 +01:00
Rocco Meli
047a481e48
Update COSTA package ( #35137 )
2023-01-25 12:01:46 +01:00
Gilles Gouaillardet
051abfb894
py-scipy: do not build 1.6 and older with python < 3.10.1 ( #35120 )
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py-scipy 1.6 and older come with pre cython-ized files that
use the _PyGen_Send symbol that was removed from python 3.10.0.161,
so do not build these old versions with python 3.10.1 and later
2023-01-24 18:32:21 -08:00
eugeneswalker
0447ba1213
loki%gcc@11: -std=c++14 to avoid issue #32122 ( #35148 )
2023-01-24 17:42:33 -08:00
Rémi Lacroix
ff3dbe9394
LAMMPS: Add package ml-hdnnp. ( #35133 )
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First added as user-hdnnp in version 20210527.
2023-01-24 17:15:23 -08:00
Thomas Bouvier
90d00f8a59
Add package py-nvidia-dali ( #35058 )
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* Add package `py-nvidia-dali`
* Add linux check
* Add missing deps
2023-01-24 18:26:04 -06:00
Taillefumier Mathieu
fdc6bd3f1c
Fix dbcsr checksums ( #35134 )
2023-01-24 22:33:12 +01:00
Cory Bloor
d17aaf8729
hip: add cuda variant ( #33872 )
2023-01-24 22:30:58 +01:00
Jen Herting
ef6699b874
New package: srcml ( #35097 )
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* Initial srcml
* [srcml]
- Fixed dependencies likely will need some more rework
- Disabling packaging cmake file (for now)
- Added patch to fix issue with source code library import
* [srcml] updated copyright
* [srcml] requires antlr complied with -fPIC
* [srcml] cleaned up dependencies
* [srcml] flake8
* [srcml] limiting boost versions
Co-authored-by: Benjamin Meyers <bsmits@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2023-01-24 13:13:56 -08:00
Adam J. Stewart
f5418ac344
py-planetary-computer: add new package ( #35089 )
2023-01-24 10:25:29 -08:00
Mikael Simberg
909a5b1d83
Add whip 0.1.0 and use in pika ( #35073 )
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* Add whip 0.1.0
* Make pika depend on whip@0.1.0
Co-authored-by: msimberg <msimberg@users.noreply.github.com>
2023-01-24 10:20:10 -08:00
Emil Briggs
9a0884bfed
rmgdft: Update for version 5.0.1 ( #35047 )
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* Updated for RMG version 5.0.1
* Update var/spack/repos/builtin/packages/rmgdft/package.py
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-01-24 10:18:05 -08:00
Seth R. Johnson
a9d5db572c
ForTrilinos: new version 2.2.0 ( #35138 )
2023-01-24 09:52:45 -08:00
Harmen Stoppels
16dbbb9b26
libgcrypt: make sure flags go through env ( #35135 )
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Parts of libgcrypt should not be optimized with -O1/2/3, so it's best to
let the build system do that; the build system cannot know the compiler
wrapper would inject optimization flags
2023-01-24 09:47:33 -08:00
John W. Parent
3695200a3c
hdf5: remove direct dependency on msmpi on Windows ( #35111 )
2023-01-24 07:57:40 -08:00
Matthieu Dorier
a1b2ba412b
mochi-margo: add v0.12 ( #35132 )
2023-01-24 16:46:27 +01:00
John W. Parent
c81f1235a9
Windows: conflict with Apple-GL ( #35114 )
2023-01-24 16:41:30 +01:00
Taillefumier Mathieu
eaa16338de
Update dbcsr version ( #35131 )
2023-01-24 15:38:49 +01:00
Massimiliano Culpo
115b6b2a51
Avoid creating help.sh and test.sh in cwd ( #35123 )
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When running unit-test the test/ci.py module is leaving
garbage (help.sh, test.sh files) in the current working
directory.
This commit changes the current working directory to a
temporary path before those files are created.
2023-01-24 03:42:15 -08:00
kwryankrattiger
cd2d6a6397
ParaView/VTK: Patch xdmf2 for HDF5 1.13 ( #33930 )
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* ParaView/VTK: Patch xdmf2 for HDF5 1.13
* Meson: update meson build system for 0.64
* ParaView: Change HDF5 1.13 patch to 1.13.1/2 patchs
* Mesa: Remove legacy mesa option from meson_args
* Use append to assemble meson args
2023-01-23 19:22:21 -08:00
Erik Schnetter
c5086a5d0e
curl: New version 7.87.0 ( #35088 )
2023-01-23 19:02:31 -08:00
downloadico
b5fc217dc2
actually add samtools 1.16.1 and fix Copyright dates on samtools, bcftools, and htslib ( #35118 )
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* samtools: add version 1.16.1 (for real this time!)
also, fix Copyright date
* bcftools and htslib: fix Copyright date
2023-01-23 17:37:40 -08:00
Richarda Butler
a4b8753456
Update: spack help --spec ( #35115 )
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* Update variant & compiler propagation
* Add the info for non boolean variants
* Add example for multi variants
2023-01-24 00:42:08 +00:00
Jean-Luc Fattebert
f3e7669400
Update qmd-progress package.py ( #34841 )
2023-01-23 14:20:19 -08:00
HELICS-bot
042d305ed0
helics: Add version 3.4.0 ( #35096 )
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Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
2023-01-23 13:56:19 -08:00
Rémi Lacroix
aca4be1fff
n2p2: Allow building shared libraries ( #35080 )
2023-01-23 13:46:19 -08:00
Alex Richert
beba33b2d8
Update parallelio from NOAA-EMC fork ( #34837 )
2023-01-23 22:29:06 +01:00
Wouter Deconinck
0f2e0a01a9
freeimage: fails to compile with c++17, use c++14 ( #35067 )
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* freeimage: fails to compile with c++17, use c++14
Only `opencascade` when a (non-default) variant depends on `freeimage`, which seems to have gone unmaintained. There are c++17 standard violations [[1]]( https://en.cppreference.com/w/cpp/language/except_spec ) in the code, so we can at most expect c++14. Since some compilers default to c++17 (gcc-12) we need to be explicit.
* freeimage: install directly in prefix
* freeimage: fix inverted patch
2023-01-23 12:14:19 -08:00
downloadico
c2d68975bc
update Samtools, bcftools, and htslib versions ( #35043 )
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* samtools: add version 1.6.1
* htslib: update version to 1.6
* bcftools: update version to 1.6
2023-01-23 12:13:05 -08:00
Christopher Christofi
b9e196e40c
perl-test-leaktrace: add 0.17 ( #35063 )
2023-01-23 10:58:08 -08:00
Jen Herting
a7fbe60660
[antlr] added pic variant ( #35091 )
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* [antlr] modernize config arg processing
* [antlr] added pic variant
* [antlr] flake8
2023-01-23 10:52:23 -08:00
