Commit graph

29489 commits

Author SHA1 Message Date
snehring
02d3bd782d
py-netcdf4: adding version 1.6.2 (#35393)
* py-netcdf4: adding version 1.6.2

* py-netcdf4: updating setuptools dep.
2023-02-08 18:10:28 -08:00
Erik Heeren
b6906be846
cvise: new package (#35366)
* cvise: new package
* cvise: colordiff as optional dependency
* cvise: remove old versions and correctly name master version
* cvise: update license date
* cvise: use maintainers directive
* Remove @olupton as maintainer

After live discussion: it's been too long since he did anything with this package.
2023-02-08 16:13:32 -08:00
H. Joe Lee
a0ce6f7890
protobuf-c: add 1.4.1 version (#35397)
* protobuf-c: add 1.4.1 version
* protobuf-c: add maintainers
2023-02-08 15:49:59 -08:00
Rocco Meli
09cf265ff4
Add new versions of spglib (#35332)
* add spglib versions
* add maintainer
* fmt
* maintainer
* url
2023-02-08 15:37:47 -08:00
Adam J. Stewart
0d72b29193
wrf: fix v4.4.2 checksum (#35401) 2023-02-08 14:24:24 -08:00
Wouter Deconinck
7f1467e795
dd4hep: new version 1.24, depends_on podio@0.16: (#35384)
* dd4hep: new version 1.24, depends_on podio@0.16:
* Update var/spack/repos/builtin/packages/dd4hep/package.py

Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch>
2023-02-08 10:51:22 -08:00
Mikael Simberg
f89cd29054
Add whip 0.2.0 (#35390) 2023-02-08 10:36:05 -08:00
Matthieu Dorier
89720583c3
[mochi-margo] Added version 0.12.1 (#35392) 2023-02-08 10:33:51 -08:00
Adam J. Stewart
7e78efcc44
spack help --spec: fix indentation (#35383) 2023-02-08 08:46:56 -08:00
Dan Lipsa
126accfce1
Fix external freetype that provides freetype-config.cmake (#35363)
* Fix external freetype that provides freetype-config.cmake

---------

Co-authored-by: Dan Lipsa <dan.lipsa@khq.kitware.com>
2023-02-08 10:00:14 -06:00
Massimiliano Culpo
27c2ff6c64
Ensure we print the correct branch number for tutorials (#35371) 2023-02-08 09:46:21 +01:00
Scott Wittenburg
9bde77199c
bindist: use append as a method, not assignable attr (#35379) 2023-02-08 09:42:28 +01:00
Adam J. Stewart
f5ed18f6a3
py-installer: bootstrap without pip (#35341)
* py-installer: bootstrap without pip

* [@spackbot] updating style on behalf of adamjstewart

---------

Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-02-07 22:30:06 -06:00
Christian Glusa
ccd11666c6
py-gmsh-interop: Fix PyPI link (#35381) 2023-02-07 20:23:41 -08:00
Christian Glusa
df80cffafa
New package: PyNucleus & dependencies (#35327)
* Add py-scikit-sparse package

* Add py-gmsh-interop package

* Add py-modepy package

* Add py-pymbolic package

* Add py-meshpy package

* Add py-pynucleus package

* Add new version of py-pytools
2023-02-07 14:12:15 -08:00
Adam J. Stewart
b52d4b8abf
py-symengine: setuptools 61+ not yet working (#35368)
* py-symengine: setuptools 61+ not yet working
* symengine still required for master
2023-02-07 11:49:07 -08:00
Teo
96624d1490
halide: new package (#35254)
* add halide package.

* some style changes.

* small fix

* Update var/spack/repos/builtin/packages/halide/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

* Update var/spack/repos/builtin/packages/halide/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/halide/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

add comment to requirements.txt

* Update package.py

Fix version order.

* Update package.py

style

* Update package.py

Removed unneeded vars.

* Update var/spack/repos/builtin/packages/halide/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/halide/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Fix some deps

* Update package.py

* Fix finding llvm cmake info

* Update package.py

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-07 13:12:29 -06:00
Dan Lipsa
1648968514
Windows: Fix spack.bat handling of env commands (#35143)
This PR enables the successful execution of the spack binary cache
tutorial on Windows. It assumes gnupg and file are available (they
can be installed with choco).

* Fix handling of args with quotes in spack.bat
* `file` utility can be installed on Windows (e.g. with choco): update
  error message accordingly
2023-02-07 11:04:14 -08:00
Paul Kuberry
8358f430a4
xyce: change cmake cxx compiler variable (#35365) 2023-02-07 14:00:15 -05:00
Adam J. Stewart
ec045f993b
py-fastrlock: add v0.8.1 (#35370) 2023-02-07 11:23:07 -07:00
Mosè Giordano
7fe2039b01
texinfo: Require ncurses (#35356)
I don't know if this is new in version 7.0, but to build `info`, which is a required executable at the end of the recipe, it is necessary to have a terminal library, otherwise you get
```
[...]
checking for tgetent in -ltinfo... no
checking for tgetent in -lncurses... no
checking for tgetent in -lcurses... no
checking for tgetent in -ltermlib... no
checking for tgetent in -ltermcap... no
checking for tgetent in -lterminfo... no
configure: WARNING: info needs a terminal library, one of: tinfo ncurses curses termlib termcap terminfo
[...]
configure: WARNING: Could not find a terminal library among tinfo ncurses curses termlib termcap terminfo
configure: WARNING: The programs from `info' directory will not be built.
```
then compilation runs, `info` is not built and installation fails according to Spack because the required executable is missing.
2023-02-07 05:27:21 -08:00
dependabot[bot]
25cb55ccd9
build(deps): bump docker/build-push-action from 3.3.0 to 4.0.0 (#35252)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 3.3.0 to 4.0.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](37abcedcc1...3b5e8027fc)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-02-07 08:17:53 +01:00
dependabot[bot]
d4e075f667
build(deps): bump docker/setup-buildx-action from 2.2.1 to 2.4.1 (#35354)
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 2.2.1 to 2.4.1.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](8c0edbc76e...f03ac48505)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-02-07 08:17:10 +01:00
Wouter Deconinck
ae98d2ba2f
Support packages for using scitokens on OSG (#35334)
* Support packages for using scitokens on OSG

The Open Science Grid (OSG)  encourages scitokens to provide
certain services (e.g. writing to xrootd). Spack already
supports this through scitokens-cpp and xrootd +scitokens-cpp.

This adds py-htgettoken, a python utility to get a scitoken
from a vault through web authentication. To support htgettoken,
this also adds py-gssapi.

This also adds the OSG CA cert collection which is typically
at /etc/grid-security but pointed to in user installations by
the X509_CERTS_DIR variable.

This allows userspace through spack for functionality that
otherwise depends on installing the RPMs provided by OSG.

* fine, I'll fix style myself then

* fix maintainers

* py-gssapi: version before depends_on

* remove list_url

* add documentation on reason for git describe version numbers

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* better BEARER_TOKEN definition

* import os

* remove older version that don't build with setuptools

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-06 23:23:03 -06:00
snehring
8e49bf0c5b
wps: adding version 4.4 (#35358) 2023-02-06 19:22:41 -08:00
Paul Kuberry
1bb119dbd7
xyce: add version 7.6.0 and RPATH patch for prior (#35360) 2023-02-06 19:17:31 -08:00
Matthias Wolf
a7f39da5db
Fix path handling in prefix inspections (#35318)
At least with ZSH, prefix inspections containing `./bin` result in a
`$PREFIX/./bin` and result in strange `$PATH` handling.

I.e., `module load git` will prepend `/path/to/git/./bin`, `which git`
will find the right executable, but `git --version` will print the
system one. Normalize the relative path to avoid this behavior.

See also spack/spack#31867.
2023-02-06 19:12:30 -08:00
Rocco Meli
1d3a74d926
freesasa: add new package (#35192)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-02-06 18:52:45 -08:00
Rocco Meli
0448f18ab2
maeparser: add new package (#35191)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-02-06 18:52:23 -08:00
Daniele Colombo
2516ed181a
relion: add patch to repair DoublePrec_CPU=OFF build (#35317)
* relion: add patch to repair DoublePrec_CPU=OFF build
* relion: added maintainer

Co-authored-by: Daniele Colombo <daniele.colombo@fht.org>
2023-02-06 15:32:06 -08:00
Sreenivasa Murthy Kolam
7740b37923
rocm llvm-amdgpu package - Build libcxx and libcxxabi thru LLVM_ENABLE_RUNTIMES flag. (#33610)
* changes to enable LLVM_ENABLE_RUNTIMES for libcxx and libcxxabi
* remove version update for 5.3.0 as it is done thru PR #33320 to enable
ci and reviews
2023-02-06 15:03:08 -08:00
Sreenivasa Murthy Kolam
358cc5ed1a
Update the ROCm packages for ROCm-5.4.0 release. (#35071)
* initial commit for rocm-5.4.0 release
* update the versions for more packages for 5.4.0 release
* update the gallium patch for mesa for libllvm-15 for ROCm-5.4.0 release
* update rocm-openmp-extras and rocwmma recipes for 5.4.0 release
* fix build error for rocfft for 5.4.0
* address review comments for rocfft for 5.4.0 change
* undo the removal of the older patch file
* bump up the version for hipfft for 5.4.0
* fix the failure after the merge with develop
* add recipes updates for 5.4.0 for migraphx.miopen-hip,miopen-opencl
* address the review comments on the mesa patch.update the rdc package for
5.4.0 release
* fix style errors
2023-02-06 15:00:10 -08:00
Adam J. Stewart
30b8cfad98
py-mypy: add v1.0.0 (#35362) 2023-02-06 16:59:04 -06:00
Tamara Dahlgren
383a343412
GenericBuilder: facilitate post-install phase test callbacks (#35314) 2023-02-06 12:51:01 -08:00
Wouter Deconinck
3714d3443b
acts: new versions 21.1.1, 22.0.1, 23.0.0 (#35227)
* acts: new versions 21.1.1, 22.0.1, 23.0.0

New versions:
- [major 23.0.0](https://github.com/acts-project/acts/compare/v22.0.0...v23.0.0):
  - new option `ACTS_BUILD_PLUGIN_GEANT4` -> enabled with existing variant `geant4`
  - new option `ACTS_BUILD_EXAMPLES_BINARIES`:
    - it is my understanding that the binaries for examples are deprecated (in favor of python examples); warnings to this effect have been printed for a few versions, and now the building of binaries is disabled by default,
    - rather than introducing a variant to enable deprecated behavior for only one or two versions, I propose that we just follow the default and keep this disabled. 
- [bugfix 22.0.1](https://github.com/acts-project/acts/compare/v22.0.0...v22.0.1) (no build system changes)
- [bugfix 21.1.1](https://github.com/acts-project/acts/compare/v21.1.0...v21.1.1) (no build system changes)

* acts: correct 23.0.0 sha

Co-authored-by: Hadrien G. <knights_of_ni@gmx.com>
2023-02-06 12:37:51 -08:00
Wouter Deconinck
42a452d54c
estarlight, dpmjet: new packages (#32834)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-02-06 09:09:22 -07:00
Jim Galarowicz
a913ed229d
Restore openspeedshop and openspeedshop-utils, update the cbtf components (#35052) 2023-02-06 16:10:41 +01:00
Vanessasaurus
7c122da48b
flux-core: add missing dependency(#35312) 2023-02-06 06:29:30 -08:00
Glenn Johnson
fdaa54941d
r-cvxr: add new package with dependencies (#35275) 2023-02-06 15:13:37 +01:00
Wouter Deconinck
135832650f
qt: new version 5.15.8 (#35352)
No build system changes, just bug fixes.

https://github.com/qt/qtbase/compare/v5.15.7-lts-lgpl...v5.15.8-lts-lgpl

Builds fine on linux-ubuntu22.10-skylake.
2023-02-06 06:12:57 -08:00
Stephen Sachs
29d710fdec
wrf: add optional netcdf_classic variant (#35261)
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2023-02-06 15:12:32 +01:00
Mikael Simberg
13c4f92907
hpx: further constrain version for mimalloc patch (#35257) 2023-02-06 15:10:08 +01:00
Erik Schnetter
7a2c9601e8
reprimand: add v1.5 (#35245)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-02-06 15:08:08 +01:00
Harmen Stoppels
31959b72b0
bump: nss + dep (#35294) 2023-02-06 15:06:16 +01:00
Erik Heeren
8109877424
amdlibflame: needs modern make (#35297)
See https://github.com/flame/libflame/issues/55
2023-02-06 15:05:16 +01:00
snehring
91243ecb5b
tau: updating python version restriction (#35268)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-06 14:58:04 +01:00
William Moses
1fc2bf846d
enzyme: add v0.0.48 (#35304) 2023-02-06 14:56:46 +01:00
Vasileios Karakasis
848344d9a5
ReFrame: add versions up to v4.0.4 (#35330) 2023-02-06 14:39:47 +01:00
Cameron Smith
e08da4e2b6
pumi and zoltan: allow building when no fortran compiler is available (#35333) 2023-02-06 14:35:44 +01:00
Wouter Deconinck
75a72766ff
assimp: new version 5.2.5 (#35335)
Bugfix release only. No build system changes.
2023-02-06 14:34:15 +01:00