Commit graph

26145 commits

Author SHA1 Message Date
iarspider
cdcdd71b41
Add new versions of py-autopep8 and py-pycodestyle (#26924)
* Add new versions of py-autopep8 (1.5.7, 1.6.0) and py-pycodestyle (2.7.0, 2.8.0)

* Update package.py

* Restore old versions
2021-10-25 22:08:52 +00:00
Daniel Arndt
e221617386
deal.II package: Update CMake variable for >=9.3.0 (#26909) 2021-10-25 15:00:40 -07:00
Massimiliano Culpo
6063600a7b
containerize: pin the Spack version used in a container (#21910)
This PR permits to specify the `url` and `ref` of the Spack instance used in a container recipe simply by expanding the YAML schema as outlined in #20442:
```yaml
container:
  images:
    os: amazonlinux:2
    spack:
      ref: develop
      resolve_sha: true
```
The `resolve_sha` option, if true, verifies the `ref` by cloning the Spack repository in a temporary directory and transforming any tag or branch name to a commit sha. When this new ability is leveraged an additional "bootstrap" stage is added, which builds an image with Spack setup and ready to install software. The Spack repository to be used can be customized with the `url` keyword under `spack`.

Modifications:
- [x] Permit to pin the version of Spack, either by branch or tag or sha
- [x] Added a few new OSes (centos:8, amazonlinux:2, ubuntu:20.04, alpine:3, cuda:11.2.1)
- [x] Permit to print the bootstrap image as a standalone
- [x] Add documentation on the new part of the schema
- [x] Add unit tests for different use cases
2021-10-25 13:09:27 -07:00
iarspider
ff65e6352f
py-avro: new version 1.10.2 (#26927)
* Add checksum for py-avro@1.10.2

* Update package.py
2021-10-25 11:45:33 -05:00
Olli Lupton
06c983d38f
cuda: add 11.4.1, 11.4.2, 11.5.0. (#26892)
* cuda: add 11.4.1, 11.4.2, 11.5.0.

Note that the curses dependency from cuda-gdb was dropped in 11.4.0.

* Update clang/gcc constraints.

* Address review, assume clang 12 is OK from 11.4.1 onwards.

* superlu-dist@7.1.0 conflicts with cuda@11.5.0.

* Update var/spack/repos/builtin/packages/superlu-dist/package.py

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-10-25 09:05:21 -07:00
iarspider
b0752bf1b3
Add checksum for py-atomicwrites@1.4.0 (#26923) 2021-10-25 10:54:04 -05:00
Kendra Long!
c9847766e4
draco: new version 7_12_0 (#26907)
* Add draco-7_12_0 to package file

* Update hash to zip version
2021-10-25 11:35:38 -04:00
Kelly (KT) Thompson
86a9c703db
eospac: new default version 6.5.0 (#26723)
* [pkg][new version] Provide eospac@6.5.0 and mark it as default.

* Merge in changes found in #21629

* Mark all alpha/beta versions as deprecated.

- Addresses @sethrj's recommendation
- Also add a note indicated why these versions are marked this way.
2021-10-25 11:10:46 -04:00
Harmen Stoppels
276e637522 Reduce verbosity of module files warning
1. Currently it prints not just the spec name, but the dependencies +
their variants + their compilers + their architectures + ...
2. It's clear from the context what spec the message applies to, so,
let's not print the spec at all.
2021-10-25 17:07:56 +02:00
Olivier Cessenat
b51e0b363e
silo: new release 4.11 (#26876) 2021-10-25 08:13:54 -06:00
Manuela Kuhn
e9740a9978
py-nipype: add 1.7.0 (#26883) 2021-10-25 06:55:50 -06:00
Harmen Stoppels
cc8d8cc9cb
Return early in do_fetch when there is no code or a package is external (#26926)
Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
2021-10-25 13:51:23 +02:00
Todd Gamblin
de8e795563 virtuals: simplify virtual handling
These three rules in `concretize.lp` are overly complex:

```prolog
:- not provider(Package, Virtual),
   provides_virtual(Package, Virtual),
   virtual_node(Virtual).
```

```prolog
  :- provides_virtual(Package, V1), provides_virtual(Package, V2), V1 != V2,
     provider(Package, V1), not provider(Package, V2),
     virtual_node(V1), virtual_node(V2).
```

```prolog
provider(Package, Virtual) :- root(Package), provides_virtual(Package, Virtual).
```

and they can be simplified to just:

```prolog
provider(Package, Virtual) :- node(Package), provides_virtual(Package, Virtual).
```

- [x] simplify virtual rules to just one implication
- [x] rename `provides_virtual` to `virtual_condition_holds`
2021-10-25 09:11:04 +02:00
Massimiliano Culpo
6d69d23aa5 Add a unit test to prevent regression 2021-10-25 09:11:04 +02:00
Massimiliano Culpo
dd4d7bae1d ASP-based solver: a package eligible to provide a virtual must provide it
fixes #26866

This semantics fits with the way Spack currently treats providers of
virtual dependencies. It needs to be revisited when #15569 is reworked
with a new syntax.
2021-10-25 09:11:04 +02:00
Miguel Dias Costa
1e90160d68
berkeleygw: force openmp propagation on some providers of blas / ffw-api (#26918) 2021-10-25 07:42:05 +02:00
Michael Kuhn
dfcd5d4c81
hyperfine: new package (#26901) 2021-10-24 20:47:56 -04:00
Satish Balay
e3b7eb418f
Add new math solver versions (#26903)
* tasmanian: add @7.7
* butterflypack: add @2.0.0
* pflotran: add @3.0.2
* alquimia: add @1.0.9
* superlu-dist: add @7.1.1
2021-10-24 20:45:44 -04:00
Michael Kuhn
fb5d4d9397
meson: add 0.60.0 (#26921) 2021-10-24 20:35:11 -04:00
Scott Wittenburg
2003fa1b35
Mark flaky test_ci_rebuild as xfail (#26911) 2021-10-24 22:46:26 +02:00
Michael Kuhn
b481b5114a
Fix pkg-config dependencies (#26912)
pkg-config and pkgconf are implementations of the pkgconfig provider.
2021-10-24 20:39:50 +02:00
Michael Kuhn
d7148a74a0
glib: add 2.70.0 (#26915) 2021-10-24 20:39:30 +02:00
Seth R. Johnson
c255e91bba
gcc: support alternate mechanism for providing GCC rpaths (#26590)
* gcc: support runtime ability to not install spack rpaths

Fixes #26582 .

* gcc: Fix malformed specs file and add docs

The updated docs point out that the spack-modified GCC does *not*
follow the usual behavior of LD_RUN_PATH!

* gcc: fix bad rpath on macOS

This bug has been around since the beginning of the GCC package file:
the rpath command it generates for macOS writes a single (invalid)
rpath entry.

* gcc: only write rpaths for directories with shared libraries

The original lib64+lib was just a hack for "in case either has one" but
it's easy to tell whether either has libraries that can be directly
referenced.
2021-10-24 13:46:52 -04:00
Michael Kuhn
5a38165674
python: add 3.9.7, 3.8.12, 3.7.12 and 3.6.15 (#26914) 2021-10-24 11:43:39 -06:00
Morten Kristensen
9e11e62bca
py-vermin: add latest version 1.3.1 (#26920)
* py-vermin: add latest version 1.3.1

* Exclude line from Vermin since version is already being checked for

Vermin 1.3.1 finds that `encoding` kwarg of builtin `open()` requires Python 3+.
2021-10-24 16:49:05 +00:00
Mark Grondona
7fee7a7ce1
flux-core, -sched: update to latest versions, fix czmq build error (#26840)
* flux-core: fix compile error with czmq_containers
* Fix build with clang and gcc-11
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-10-23 17:37:44 +02:00
Jen Herting
7380161ea6
[py-emcee] added versions 3.0.2 and 3.1.1 (#26910)
* [py-emcee] added version 3.0.2

* [py-emcee] added version 3.1.1
2021-10-22 17:52:45 -06:00
eugeneswalker
0baec34dd7
E4S amd64 CI: add parsec (#26906) 2021-10-22 15:02:47 -06:00
Wouter Deconinck
d04b6e0fb5
acts: fix misspelled variant in depends_on (#26904)
Correct variant is plural `unit_tests`.
2021-10-22 12:19:51 -06:00
Harmen Stoppels
336c60c618
Document backport in py (#26897) 2021-10-22 19:14:35 +02:00
iarspider
0beb2e1ab2
Update py-aiohttp to 3.7.4 and py-chartdet to 4.0 (#26893)
* Update py-aiohttp to 3.7.4 and py-chartdet to 4.0

* Changes from review

* Update package.py

* Update var/spack/repos/builtin/packages/py-chardet/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-22 16:36:56 +00:00
iarspider
aa2bcbdc12
Use pypi for astroid; add versions 2.7.3 and 2.8.3; update dependencies (#26900)
* Use pypi for astroid; add versions 2.7.3 and 2.8.3; update dependencies

* py-six is not required for recent versions
2021-10-22 16:21:22 +00:00
Wouter Deconinck
d5880f3e7e
acts: add v14.0.0, v14.1.0 added "python" and "analysis" variants (#26657) 2021-10-22 17:43:35 +02:00
Robert Cimrman
2d41d6fc9e
py-sfepy: fix version 2021.3 tar.gz hash (#26890) 2021-10-22 10:23:58 -05:00
iarspider
8349a8ac60
Add py-asn1crypto@1.4.0 (#26895) 2021-10-22 10:22:30 -05:00
Manuela Kuhn
edc7341625
py-jupyterlab: add 3.1.18 and 3.2.1 (#26896) 2021-10-22 10:21:00 -05:00
Harmen Stoppels
609a42d63b
Shorten long shebangs only if the execute permission is set (#26899)
The OS should only interpret shebangs, if a file is executable. 

Thus, there should be no need to modify files where no execute bit is set. 

This solves issues that are e.g. encountered while packaging software as 
COVISE (https://github.com/hlrs-vis/covise), which includes example data
in Tecplot format. The sbang post-install hook is applied to every installed
file that starts with the two characters #!, but this fails on the binary Tecplot
files, as they happen to start with #!TDV. Decoding them with UTF-8 fails 
and an exception is thrown during post_install.

Co-authored-by: Martin Aumüller <aumuell@reserv.at>
2021-10-22 16:55:19 +02:00
Harmen Stoppels
d274769761
Backport #186 from py-py to fix macOS failures (#26653)
Backports the relevant bits of 0f77b6e66f
2021-10-22 13:52:46 +02:00
Harmen Stoppels
7cec6476c7
Remove hard-coded repository in centos6 unit test (#26885)
This makes it easier to run tests in a fork.
2021-10-22 10:24:03 +02:00
Doug Jacobsen
d1d0021647
Add GCS Bucket Mirrors (#26382)
This commit contains changes to support Google Cloud Storage 
buckets as mirrors, meant for hosting Spack build-caches. This 
feature is beneficial for folks that are running infrastructure on 
Google Cloud Platform. On public cloud systems, resources are
ephemeral and in many cases, installing compilers, MPI flavors,
and user packages from scratch takes up considerable time.

Giving users the ability to host a Spack mirror that can store build
caches in GCS buckets offers a clean solution for reducing
application rebuilds for Google Cloud infrastructure.

Co-authored-by: Joe Schoonover <joe@fluidnumerics.com>
2021-10-22 06:22:38 +02:00
Miroslav Stoyanov
d024faf044
heffte: new version with rocm (#26878) 2021-10-22 01:12:46 +00:00
Cameron Stanavige
8b8bec2179
scr/veloc: component releases (#26716)
* scr/veloc: component releases

Update the ECP-VeloC component packages in preparation for an
upcoming scr@3.0rc2 release.

All
- Add new release versions
- Add new `shared` variant for all components
- Add zlib link dependency to packages that were missing it
- Add maintainers
- Use self.define and self.define_from_variant to clean up cmake_args

axl
- Add independent vendor async support variants

rankstr
- Update older version sha that fails checksum on install

* Fix scr build error

Lock dependencies for scr@3.0rc1 to the versions released at the same
time.
2021-10-21 18:05:59 -07:00
Frank Willmore
a707bf345d
Add vacuumms package (#26838) 2021-10-21 17:12:08 -07:00
Robert Cimrman
9b28f99dd2
py-sfepy: add v2021.3 (#26865) 2021-10-21 23:50:38 +00:00
Manuela Kuhn
dbe1060420
py-neurokit2: add 0.1.4.1 (#26871)
* py-neurokit2: add 0.1.4.1

* Update var/spack/repos/builtin/packages/py-neurokit2/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-21 21:03:04 +00:00
eugeneswalker
3720d06e26
update E4S CI environments in preparation for 21.11 release (#26826)
* update E4S CI environments in preparation for 21.11 release

* e4s ci env: use clingo
2021-10-21 07:06:02 -07:00
Alexander Jaust
3176c6d860
[py-pyprecice] add v2.3.0.1 and fix hash of v2.2.1.1 (#26846) 2021-10-21 08:36:24 -05:00
Harmen Stoppels
3fa0654d0b
Make 'spack location -e' print the current env, and 'spack cd -e' go to the current env (#26654) 2021-10-21 13:19:48 +02:00
Eric Brugger
7f4bf2b2e1
vtk: make use of system GLEW dependent on osmesa being disabled. (#26764) 2021-10-21 09:53:13 +02:00
Vanessasaurus
3fe1785d33
libabigail: support source install (#26807)
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-10-21 09:22:22 +02:00