Commit graph

10937 commits

Author SHA1 Message Date
Adam J. Stewart
4f5bd044d6
py-torchvision: add new version (#16208) 2020-04-21 11:43:30 -05:00
Michael Kuhn
b9655636ce
gettext: Fix typo (#16206) 2020-04-21 08:48:48 -07:00
Andrew Gaspar
a41b9365a9
catch2: added v2.12 (#16207) 2020-04-21 17:15:59 +02:00
Michael Kuhn
cd5d477db9
qgis: Fix pkgconfig dependency (#16188) 2020-04-21 08:02:45 -05:00
Axel Huebl
6c8e15ee18
gettext: add missing iconv dependency (#16193)
`gettext` will pick up a random `iconv` dependency if not
specified, which crashes python and its own builds on macOS.
2020-04-20 21:47:04 -07:00
Christoph Junghans
ca86e56572
votca-*: remove rc versions (#16197) 2020-04-20 20:30:43 -06:00
darmac
e4805bb75f
Add new package: sse2neon (#16168) 2020-04-20 16:59:51 -05:00
Adam J. Stewart
45fee6edbd
Python: add latest Python 2 releases (#16191) 2020-04-20 16:57:08 -05:00
G-Ragghianti
5e69125e51
Implemented +shared and +static_tools variants (#16105) 2020-04-20 16:54:44 -05:00
Toyohisa Kameyama
c6ef9c2b87
Add ppOpen-APPL/FDM and ppOpen-APPL/FDM-AT. (#16116) 2020-04-20 16:36:36 -05:00
Toyohisa Kameyama
8e7f55e6d6
ppOpen-APPL/DEM-util: New package (#16120) 2020-04-20 16:29:06 -05:00
darmac
c2ca832883
Add new package: audacious (#16121) 2020-04-20 16:24:33 -05:00
darmac
e8a7e4f5ec
Add new package: bgpdump (#16122) 2020-04-20 16:23:47 -05:00
darmac
cf12541281
Add new package: byacc (#16123)
* Add new package: byacc

* refine byacc info
2020-04-20 16:22:37 -05:00
Amjad Kotobi
a70e76d043
Package Bonniepp adding sbin to PATH (#16124) 2020-04-20 16:19:55 -05:00
Michael Kuhn
8635c0d804
rocksdb: Add 6.7.3 (#16189)
This also adds a shared variant, so we can build both the static and
shared libraries at the same time. It also adds a pkg-config file.
2020-04-20 16:16:51 -05:00
Michael Kuhn
e3966d2791
pixman: Add 0.40.0 (#16190) 2020-04-20 16:16:39 -05:00
Amjad Kotobi
78f1940646
update package py-graphviz version (#16131) 2020-04-20 16:11:07 -05:00
Hadrien G
ac17d0783a
Add Acts v0.22 (#16141) 2020-04-20 16:08:44 -05:00
darmac
eb0d82a7e4
Add new package: codec2 (#16142) 2020-04-20 16:07:44 -05:00
darmac
126491288a
Add new package: libsamplerate (#16143) 2020-04-20 16:07:18 -05:00
darmac
cab1d06d6a
Add new package: collectd (#16144) 2020-04-20 16:06:31 -05:00
darmac
ed13319a4b
Add new Package: accumulo (#16148) 2020-04-20 15:59:16 -05:00
Justin S
73e0dd9f61
prism: new package at 4.5 (#16187) 2020-04-20 15:39:53 -05:00
Michael Kuhn
1f49fb8ceb
python: Add 3.7.7 (#16170) 2020-04-20 15:32:58 -05:00
Elizabeth Fischer
742a4b7e2a
proj (#16175)
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-04-20 15:21:36 -05:00
Elizabeth Fischer
3a9ce3ac4a
glib (#16179)
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-04-20 15:15:38 -05:00
Adam J. Stewart
0db2f00635
PyTorch: remove CUDA conflicts (#16136) 2020-04-20 14:57:56 -05:00
Todd Gamblin
de13ea2284
autotools: remove FORCE_UNSAFE_CONFIGURE from docs, commands, code (#16145)
Since #16132, we've consolidated the setting of FORCE_UNSAFE_CONFIGURE to
`autotools.py`, so we don't need to use it in packages like `coreutils`,
in our commands, or in our container recipes.

- [x] Remove FORCE_UNSAFE_CONFIGURE from packages
- [x] Remove FORCE_UNSAFE_CONFIGURE from container recipes
- [x] Remove FORCE_UNSAFE_CONFIGURE from `spack ci` command
2020-04-20 08:32:03 -07:00
darmac
e9e2d1d3ca
Httpd: added package at v2.4.43 (#16152) 2020-04-20 09:32:39 +02:00
Glenn Johnson
dff5a4ba57
ngmerge: added package at v0.3 (#16160) 2020-04-20 09:26:22 +02:00
Adam J. Stewart
9a522505e4
Cython: add new version (#16159) 2020-04-19 19:30:21 -05:00
Adam J. Stewart
f9733058a4
NumPy: add new version (#16158) 2020-04-19 17:28:18 -05:00
Toyohisa Kameyama
f1d48a2a8e
FrontFlow/Red: New Package. (#15965)
* FrontFlow/Red: New Package.

* fix comment.
use libs.ld_flags.

* typo fix.

* typo fix.
2020-04-18 22:58:43 -05:00
Veselin Dobrev
d9992a778f
CEED v3.0 release (#15500)
* [mfem] A few updates: add 'strumpack' variant; add 'zlib'
       variant (same as 'gzstream'); fix optmization flag
       for v4.0.

* [mfem] flake8 fix

* [mfem] Add version 4.1

* [mfem] Add/tweak some 'conflicts' directives.

* [gslib] Add new release versions + 'develop' version.

* [petsc] Restrict hdf5 version to <= 1.10.99 since 1.12.0 fails

* [metis] Use the original metis url for v4.0.3.

* [conduit] Remove restrictions to the used hdf5 variant to allow
          building with other packages that use hdf5, e.g. petsc.

* [mfem] Few updates:
* Replace the 'gzstream' variant with 'zlib' variant.
* Do not add system library paths with -L flags.
* Allow '+pumi+shared' variant.
* Update the 'test_builds.sh' script.

* [occa] Add version 1.0.9.

* [mfem] Some OCCA and RAJA updates.

* [gslib] Fix the build for new versions of the library.

* [mfem] Add 'gslib' variant for GSLIB.

* [mfem] Add 'cuda' variant.

* [mfem] Add 'libceed' variant + a few more tweaks.

* [mfem] Add 'umpire' variant.

* [ceed] Add a draft for v3.0. Not tested. Just made sure that
       concretization works for 'ceed' and 'ceed+cuda'.

* [nek] Fix Nek5000/NekCEM

* [nek] Add Nek5000-v19 & polishing Nek packages

* [flake8] Fix flake8 failure

* petsc: use of HDF5 does not care about +hl+fortran

* [petsc] Temporarily allow any hypre version with petsc@develop.

[ceed] Remove the requirement for hypre@develop.

* [libceed] Do not explicitly set NVCCFLAGS for v0.5 and later.

* [laghos] Add version 3.0, pointing to dev branch for now.
         Do not set CXX at the make command line.
         Simplify the dependecy directives a little.

[ceed] Use laghos v3.0 for ceed v3.0.0.

* [laghos] Keep the injection of CXX in the makefile for laghos
         versions <= 2.0.

* [nekcem] Recovert hash-versions used by older versions of the
         'ceed' package.

* [occa] Disable hip autodetection because it fails on some machines.

* [laghos] Update v3.0 with the actual release source.

* [suite-sparse] Explicitly add the c11 flag to CFLAGS.

* Update package.py (#15749)

* [magma] Add forgotten specification of the 'cuda_arch' variant.

* [ceed] Use magma v2.5.3 for ceed v3.0.

* libceed-0.6

* mfem: depend on libceed 0.6:, not 0.6.0:

* [libceed] Add 'magma' variant -- enable MAGMA backend.

* [ceed] In v3.0, use '+magma' variant of libceed when cuda is enabled.

* Initial package for Remhos (needs to be updated with actual sha256

* Adding Remhos to CEED-3.0, for now @develop

* petsc: add 3.13.0 (using petsc-lite) and 3.12.5

* ceed: update to petsc@3.13.0:3.13.99

* Temporary fix

* [nekcem] Add hash-version for ceed v3.0.

* [nek5000] Simplify source urls.

* [nektools] Use the same sources and versions as in nek5000.

* [ceed] Update Nek-related package versions.

* libceed: add v0.6 portabilty fix

* libceed: better v0.6 portabilty fix

* Adding Remhos 1.0 release in CEED-3.0

* Updating hash for Remhos-1.0

* [petsc] Add cuda variant.

* [libceed] Flake8 fix.

* [petsc] Add cuda variant.

* [ceed] Fix the OCCA version to 1.0.9. Enable petsc+cuda when
       compiling ceed@3.0.0+cuda.

* nek5000: fix python 2.7+ syntax

* [laghos] Fix testing.

* [remhos] Fix testing.

* [remhos] For testing use the 'tests' target instead of 'test'.

* Add/update the maintainers for ceed, libceed, mfem, laghos, and remhos.

* [ceed] Remove unnecessary dependencies.

* libceed: activate AVX when supported

Co-authored-by: Thilina Rathnayake <thilinarmtb@gmail.com>
Co-authored-by: Jed Brown <jed@jedbrown.org>
Co-authored-by: Stan Tomov <tomov@eecs.utk.edu>
Co-authored-by: Tzanio <tzanio@llnl.gov>
2020-04-18 16:57:57 -07:00
Christoph Junghans
5d008dc37b
votca-*: add v1.6 (#16139) 2020-04-18 08:16:48 -07:00
Daryl W. Grunau
6cb11d489b
DDD bugfix (#16095)
* DDD: apply extended-prompt patch

* DDD: apply extended-prompt patch

* use the upstream patch

Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-04-17 21:34:49 -05:00
Levi Baber
73d78ae176
py-cutadapt: add version 2.9 (#16135) 2020-04-17 18:35:33 -07:00
Adam J. Stewart
def1d5e637
MPFR: fix patch checksum, add dependencies (#15783)
* MPFR: fix patch checksum, add dependencies

* Update checksum again
2020-04-17 16:30:45 -05:00
Adam J. Stewart
28995b25bc
OpenMPI: add +cxx variant (#15477)
* OpenMPI: add +cxx variant

* C++ support will be removed in 5.0.X release
2020-04-17 16:29:50 -05:00
Adam J. Stewart
284e450c91
Language-specific PIC flags (#15474)
* Language-specific PIC flags

* Add tests for every compiler flag

* Fix bad rebase

* pic_flag -> cxx_pic_flag
2020-04-17 16:28:51 -05:00
Jordan Ogas
ad8977467b
charliecloud: fix url (#16133) 2020-04-17 13:51:18 -07:00
Nichols A. Romero
ebd86bd1eb
LLVM libomptarget fixes (#16104)
* Throw an error at spack install invocation instead of most of the way through the build process when cuda_arch is unspecified.

* Clean-up of CMake booleans. No actual change.

* Use CMake variables for hwloc and libelf installation directories and avoid injecting extra flags into CMAKE_CXX_FLAGS

* Conflict should only exist for +cuda variant.
2020-04-17 15:18:27 -05:00
Todd Gamblin
ac54b7d5c1 coreutils: add variant for g prefix
- [x] Add a `gprefix` variant to coreutils, so that the 'g' prefix on
  binaries is optional.
- [x] Make un-prefixed binaries the default again
2020-04-17 11:21:50 -07:00
Adam J. Stewart
85e089e3fa
NCCL: add new version (#16130) 2020-04-17 13:14:36 -05:00
Adam J. Stewart
435470a93b
oneDNN: add new version (#16129) 2020-04-17 13:14:22 -05:00
Andrew W Elble
985af94c45
singularity: new variants to enable non-suid and non-network builds (#16088)
Defaults are left as they are currently
2020-04-17 17:38:22 +02:00
ilbiondo
854a82bbec
New package: Biopandas python package (#16066)
* Biopandas python package

* Update var/spack/repos/builtin/packages/py-biopandas/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-biopandas/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* remove scipy dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-17 09:50:33 -05:00
Stan Tomov
950180ab03
magma: added v2.5.3 (#16097)
Also updated maintainer list
2020-04-17 11:33:24 +02:00
Michael Kuhn
791e354b2a
py-gcovr: added new package at v4.2 (#16100) 2020-04-17 11:32:19 +02:00