Commit graph

22933 commits

Author SHA1 Message Date
Valentin Volkl
1f972f90c8
podio, edm4hep: fix tests (#26116)
Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2021-09-26 15:49:10 +02:00
Brian Van Essen
123c105771
onnx: fix python version in environments (#26131)
When using the ONNX package inside of an environment that specifies a
python3 executable, it will attempt to use a system installed
version.  This can lead to a failure where the system python and the
environment python don't agree and the system python ends up with an
invalid environment.  Forces ONNX to use the same version of python as
the rest of the spec.

Co-authored-by: Greg Becker <becker33@llnl.gov>
2021-09-26 15:48:45 +02:00
Brian Van Essen
b909560ed5
Added CMake command to export compiler directories to support emacs LSP mode. (#26118) 2021-09-26 15:47:46 +02:00
Paul Spencer
0e6e9c23a1
libsignal-protocol-c: new package (#26121)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-09-26 15:47:15 +02:00
Hadrien G
a99d8463ac
diffutils: Add v3.8, fixes an incompatibility with newer glibc (#26237) 2021-09-26 12:30:16 +02:00
Harmen Stoppels
e76462da38
Compiler conflict in umpire as a range (#26161) 2021-09-26 12:28:30 +02:00
Harmen Stoppels
fbda52d1b0
Curl 7.79.0 (#26075) 2021-09-26 12:28:05 +02:00
Manuela Kuhn
ab85961e73
py-datalad-hirni: add new package (#26227) 2021-09-26 09:20:36 +00:00
Nikolay Simakov
72cabcf454
enzo: build extra tools, add optimization variant (#25401)
* added inits and rings tools to be built
* added opt variant
2021-09-26 10:59:06 +02:00
iarspider
344b37730b
jemalloc: add more variants (#26144) 2021-09-26 10:56:27 +02:00
bernhardkaindl
5967a10432
candle-benchmarks: depend_on()s: Fix obsoleted and renamed variants (#26250)
Fix solving/concretizing candle-benchmarks:
py-theano: The requested variant +gpu us now named +cuda
opencv: The requested variants +python and +zlib are now fixed deps
2021-09-26 10:37:01 +02:00
bernhardkaindl
6ccda81368
log_parser.py: Find failed test case messages in error logs (#25694)
- Match failed autotest tests show the word "FAILED" near the end
- Match "FAIL: ", "FATAL: ", "failed ", "Failed test" of other suites
- autotest "   ok"$ means the test passed, independend of text before.
- autoconf messages showing missing tools are fatal later, show them.
2021-09-26 10:35:04 +02:00
bernhardkaindl
34415f6878
swiftsim: Fix build with version bump and depends_on('gsl') (#26166)
swiftsim-0.7.0 didn't build because of a configure script issue and
more. Fix the build by a version bump and adding `depends_on('gsl')`.
2021-09-26 10:32:44 +02:00
bernhardkaindl
a947680e37
dropwatch: make check starts a daemon which does not stop: Skip it (#26164)
dropwatch is a network packet drop checker and it's make check starts
a daemon which does not terminate.

- Skip this test to not block builds.
- Add depends_on('pkgconfig', type='build')
  It is needed in case the host does not have pkg-config installed.
- Remove the depends_on('m4', type='build'):
  The depends_on('autoconf', type='build') pulls m4 as it needs it.
2021-09-26 10:32:04 +02:00
bernhardkaindl
2154786b61
dnstop: needs ncurses and it forgot to add -ltinfo (#26163)
dnstop misses a depends('ncurses') and it needs
to link with libtinfo from ncurses as well.
2021-09-26 10:30:42 +02:00
bernhardkaindl
9a64a229a0
xfwp: Fix build using: env.append_flags('CPPFLAGS', '-D_GNU_SOURCE') (#26157)
Without -D_GNU_SOURCE, the build of xfwp has many compilation errors.
Example: io.c:1039:7: error: implicit declaration of function 'swab'
2021-09-26 10:29:43 +02:00
bernhardkaindl
7189a69c70
rivet: Fix of build and tests on Ubuntu 18.04 w/ version bump (#26152)
When using Ubuntu's gcc-8.4.0 on Ubuntu 18.04 to compile rivet-3.1.3,
compilation errors related to UnstableParticles(), "UFS" show up.

Compilation with this compiler is fixed in rivet-3.1.4, adding it.

Adding type='link' to the depends on 'hepmc' and 'hepmc' fixes
the tests to find libHepMC.so.4 in `spack install --tests=all`

Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch>
2021-09-26 10:29:08 +02:00
bernhardkaindl
fee0831b63
acct: skip installcheck: fails checking if all progs have --help (#26093)
Checks if all programs support --help and --version but not all do.
2021-09-26 10:26:21 +02:00
bernhardkaindl
919a893c08
mountpointattr: Fix checksum of 1.1.1 and fix build(patch is only for 1.1) (#26087) 2021-09-26 10:25:50 +02:00
bernhardkaindl
91ce8354a2
cairo: pass tests: devs wrote that other people shouldn't attempt them (#26086)
The cairo test suite is huge, has many backends and the README states
that running and attempting to pass it is not a goal for normal users,
it has so many dependencies into the system, including fonts, that
passing it is not a goal realistically in reach soon:
Skip it, it takes far too long to be practical.
2021-09-26 10:25:26 +02:00
bernhardkaindl
c411779c51
libfuse: Fix build when meson doesn't get host's udev pkg (#26147)
Despite the patch disabling installation of rules, meson's setup
stage looks up the udev package to get `/lib/udev/rules.d`, but as
spack has no `systemd/udev` package, it would fail to build.

Fix such builds by passing `-Dudevrulesdir` and bump version to 3.10.5
2021-09-26 10:24:30 +02:00
Manuela Kuhn
17857083b0
py-datalad-container: add new package (#26222) 2021-09-26 10:18:17 +02:00
Manuela Kuhn
dbbc2879e5
py-datalad-neuroimaging: add new package (#26223) 2021-09-26 10:17:22 +02:00
Manuela Kuhn
d627026910
py-datalad-webapp: add new package (#26226) 2021-09-26 09:50:01 +02:00
Manuela Kuhn
3b323d6c90
py-datalad-metalad: add new package (#26225)
Added py-nose for import and a simple installtest from appveyor.yml

Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-09-26 07:44:18 +00:00
bernhardkaindl
7ca657aef6
libidl builds using flex and bison: Add them as build-depends (#26183) 2021-09-26 09:40:18 +02:00
Jen Herting
27e6032f73
New package: py-gpyopt (#26232)
Co-authored-by: Sid Pendelberry <sid@rit.edu>
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-09-26 07:34:18 +00:00
Adam J. Stewart
76ca57bb2f
py-scikit-learn: add v1.0 (#26243) 2021-09-26 08:33:58 +02:00
Jen Herting
56858eb34e
first build of py-doe2 a fork of py-doe (#26235)
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-09-26 08:12:40 +02:00
Carlos Bederián
b4b3b256bc
ucx: use bfd instead of lld with %aocc (#26254) 2021-09-26 04:47:07 +02:00
Jen Herting
3c14d130ca
New package: r-styler (#25399) 2021-09-25 20:50:22 +00:00
Sreenivasa Murthy Kolam
b56e1d1f6d
limit the amd_target_sram_ecc to rocm-3.9.0-4.0.0 (#26240) 2021-09-25 19:18:44 +00:00
Sam Reeve
b2376db632
cabana: add 0.4 and new dependency variants (#25847)
Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
Co-authored-by: Christoph Junghans <junghans@votca.org>
2021-09-25 12:04:24 -06:00
Glenn Johnson
d8dc1f2c80
new package: dicom3tools (#25700) 2021-09-25 08:43:17 -06:00
Jen Herting
348cebfb8f
py-sobol-seq: new package (#26234)
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-09-25 14:39:36 +02:00
Jen Herting
3f7d6763e0
New package: py-pydoe (#26233)
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-09-25 14:34:35 +02:00
bernhardkaindl
ff511e090a
autotools doc PR: No depends_on('m4') with depends_on('autoconf') (#26101)
* autotoolspackage.rst: No depends_on('m4') with depends_on('autoconf')
  - Remove `m4` from the example depends_on() lines for the autoreconf phase.
  - Change the branch used as example from develop to master as it is
    far more common in the packages of spack's builtin repo.
- Fix the wrong info that libtoolize and aclocal are run explicitly
  in the autoreconf phase by default. autoreconf calls these internally
  as needed, thus autotools.py also does not call them directly.
- Add that autoreconf() also adds -I<aclocal-prefix>/share/aclocal.
- Add an example how to set autoreconf_extra_args.
- Add an example of a custom autoreconf phase for running autogen.sh.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-09-25 10:15:03 +02:00
Alec Scott
ef7cf83ea5
Add Go v1.17.1 (#26128) 2021-09-25 01:22:34 -06:00
acastanedam
b67cfc0fd1
gpi-2: improve GPI-2 installation (#25808)
Based on the original script of R. Mijakovic further improvements of
GPI-2 installation, in particular different official versions,
configuration setups and even testing. Importantly, the non-autotools
way of installation for older versions is also considered, which is
relevant for some packages using GPI-2.

Co-authored-by: Arcesio Castaneda Medina <arcesio.castaneda.medina@itwm.fraunhofer.de>
2021-09-25 00:58:46 -06:00
bernhardkaindl
e3dc586064
xload: fix build by disabling gettext and add v1.1.3 (#26142)
xload failed with unresolved referenced to libintl functions:
Disabled it's use of gettext calls and added the last "new" version.

Co-authored-by: Bernhard Kaindl <bernhard.kaindl@ait.ac.at>
2021-09-25 00:58:32 -06:00
AMD Toolchain Support
ed13addf3b
Cloverleaf: adding AOCC support (#26148)
Co-authored-by: Mohan Babu <mohbabul@amd.com>
2021-09-25 00:49:43 -06:00
Adam J. Stewart
b8e21f2b0b
GDAL: fix build of Java bindings (#26244) 2021-09-25 00:01:45 -06:00
Manuela Kuhn
7e67652983
py-datalad: add 0.15.1 (#26230) 2021-09-24 23:40:48 -06:00
kwryankrattiger
a9cb31ab49
Enable cinema variant in ecp-data-vis-sdk (#26176) 2021-09-25 07:18:34 +02:00
Filippo Spiga
c725ca83ce
nvhpc: add v21.9 (#26217) 2021-09-25 07:15:22 +02:00
bernhardkaindl
2eddc60baa
tauola: Fix build: The current build wants lhapdf headers by default (#26154)
The hand-written `configure` script of this package does not handle
--without-<feature> at all. The source wants to use `lhapdf` headers
even if support of lhapdf is not indicated using `--with-lhapdf`.

Enable the variant `lhapdf` by default: It fixes the build of the
current package and provides the TauSpinner feature as well.
2021-09-24 20:16:59 -06:00
bernhardkaindl
13d313d3ad
scallop: Fix build by bumping the version to 0.10.5 (#26162)
build of 0.10.3 fails with CoinPragma.hpp: No such file or directory
2021-09-24 18:11:06 -06:00
Olivier Cessenat
8ed7f65bc8
pigz: new version 2.6 (#26066) 2021-09-24 17:17:08 -06:00
bernhardkaindl
742bd1f149
nix: bump version, add new depends and make installcheck pass (#26179)
The current version of `nix` has some more features and has more
dependencies. The installcheck is quite involved but passes now.
2021-09-24 17:08:10 -06:00
bernhardkaindl
8d70f94aae
cgdcbxd: Fix build: Use DESTDIR=self.prefix to not write to /etc (#26145)
Fix the build for normal non-root/non-system-user builds, as we cannot
know that we'd have to uninstall these files even if installed as root.
Also add `pkgconfig` and remove not explicitly needed `depends_on('m4')`
2021-09-24 16:32:09 -06:00