Commit graph

14531 commits

Author SHA1 Message Date
Cody Balos
4ec044817b
sundials: add new version (#21488) 2021-02-04 12:19:12 -08:00
Sergei Shudler
10204826db
superlu: Add e4s testsuite-inspired smoke test (#21230) 2021-02-04 12:10:15 -08:00
Adam J. Stewart
6fdb9309d6
py-xarray: add v0.16.2 (#21489) 2021-02-04 11:15:50 -08:00
Kelly (KT) Thompson
473f075896
[pkg][new version] Provide draco@7.9.1 (#21486)
+ Provide optional variant `pythontools` (default False) that adds a run-time dependency on
  `py-matplotlib`.
+ Latest versions require `cmake@3.18:` to support cuda features.
+ Enable a cmake option that forcibly disables qt support.  Previously, draco would enable qt
  support if it was available in the local build environment (outside of spack).
2021-02-04 10:37:36 -08:00
Kurt Sansom
f506b9c7f8
update: update pfunit releases (#21485) 2021-02-04 10:29:52 -08:00
m-shunji
0910f37f45
parallelio: add necessary resources (#21477)
Co-authored-by: Toyohisa Kameyama <kameyama@riken.jp>
2021-02-04 10:13:30 -08:00
Kelly (KT) Thompson
331a1b59b1
Provide eospac-6.4.2. (#21476) 2021-02-04 10:07:34 -08:00
Adam J. Stewart
ba70f90ee0
Fix usage of PythonPackage.test outside of PythonPackage (#20555) 2021-02-04 11:00:37 -06:00
Tomoki, Karatsu
f0cafd21ce
py-numpy: Fix for new version of numpy with Fujitsu compiler. (#21479)
* Change the version to apply patches.

* Change the name of the Fujitsu compiler to 'fujitsu' in numpy.
2021-02-04 10:58:48 -06:00
Adam J. Stewart
df5992293a
Python: add maintainer(s) (#21125)
* Python: add maintainer(s)

* Fix unit tests
2021-02-04 10:00:21 -06:00
Adam J. Stewart
d14a6dc1f7
py-mypy: add v0.800 (#21386) 2021-02-04 10:00:03 -06:00
Seth R. Johnson
31722ac994
Graphviz: don't build ghostscript when ~ghostscript (#19615)
* graphviz: Remove ghostscript requirement when ~ghostscript

* Add doc variant and patch for 2.44.1

* Patch does not apply

* Update graphviz versions, using archives rather than git hash

* Complete implementation of doc variant

* Fix typo
2021-02-04 09:59:24 -06:00
Harmen Stoppels
39a429b2a3
dbcsr: add opencl as a third backend (#21468) 2021-02-04 13:44:59 +00:00
Massimiliano Culpo
694d633a2c
spack external find: allow to search by tags (#21407)
This commit adds an option to the `external find`
command that allows it to search by tags. In this
way group of executables with common purposes can
be grouped under a single name and a simple command
can be used to detect all of them.

As an example introduce the 'build-tools' tag to
search for common development tools on a system
2021-02-04 13:17:32 +01:00
Andrew-Dunning-NNL
e9ae44fd8c
py-flufl-lock: new recipe (#21334)
* py-flufl-lock: new recipe

* py-flufl-lock: fix typing extension when no longer provisional
2021-02-03 21:15:48 -06:00
Greg Becker
457fc4c095
link gettext properly for git when gettext does not provide libintl (#21472) 2021-02-04 01:45:53 +00:00
Frank Willmore
beb4d968ef
intel-oneapi-compilers/mpi: add module support (#20808)
Facilitate running intel-oneapi-mpi outside of Spack (set PATH,
LD_LIBRARY_PATH, etc. appropriately).

Co-authored-by: Robert Cohn <rscohn2@gmail.com>
2021-02-03 16:21:54 -08:00
Frank Willmore
eb345faa57
intel-oneapi-compilers: add to LD_LIBRARY_PATH so that it finds libimf.so (#20717)
* add  to LD_LIBRARY_PATH so that it finds libimf.so

* amrex: fix handling of CUDA arch (#20786)

* amrex: fix handling of CUDA arch
* amrex: fix style
* amrex: fix bug
* Update var/spack/repos/builtin/packages/amrex/package.py
* Update var/spack/repos/builtin/packages/amrex/package.py

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* ecp-data-vis-sdk: Combine the vis and io SDK packages (#20737)

This better enables the collective set to be deployed togethor satisfying
eachothers dependencies

* r-sf: fix dependency error (#20898)

* improve documentation for Rocm (hip amd builds) (#20812)

* improve documentation

* astyle: Fix makefile for install parameter (#20899)

* llvm-doe: added new package (#20719)

The package contains duplicated code from llvm/package.py,
will supersede solve.

* r-e1071: added v1.7-4 (#20891)

* r-diffusionmap: added v1.2.0 (#20881)

* r-covr: added v3.5.1 (#20868)

* r-class: added v7.3-17 (#20856)

* py-h5py: HDF5_DIR is needed for ~mpi too (#20905)

For the `~mpi` variant, the environment variable `HDF5_DIR` is still required.  I moved this command out of the `+mpi` conditional.

* py-hovorod: fix typo on variant name in conflicts directive (#20906)

* fujitsu-fftw: Add new package (#20824)

* pocl: added v1.6 (#20932)

Made version 1.5 or lower conflicts with a64fx.

* PCL: add new package (#20933)

* r-rle: new package (#20916)

Common 'base' and 'stats' methods for 'rle' objects, aiming to make it
possible to treat them transparently as vectors.

* r-ellipsis: added v0.3.1 (#20913)

* libconfig: add build dependency on texinfo (#20930)

* r-flexmix: add v2.3-17 (#20924)

* r-fitdistrplus: add v1.1-3 (#20923)

* r-fit-models: add v0.64 (#20922)

* r-fields: add v11.6 (#20921)

* r-fftwtools: add v0.9-9 (#20920)

* r-farver: add v2.0.3 (#20919)

* r-expm: add v0.999-6 (#20918)

* cln: add build dependency on texinfo (#20928)

* r-expint: add v0.1-6 (#20917)

* r-envstats: add v2.4.0 (#20915)

* r-energy: add v1.7-7 (#20914)

* r-ellipse: add v0.4.2 (#20912)

* py-fiscalyear: add v0.3.0 (#20911)

* r-ecp: add v3.1.3 (#20910)

* r-plotmo: add v3.6.0 (#20909)

* Improve gcc detection in llvm. (#20189)

Co-authored-by: Tom Scogland <tom.scogland@gmail.com>
Co-authored-by: Thomas Green <ca-tgreen@gw4a64fxlogin00.head.gw4.metoffice.gov.uk>

* hatchet: updated urls (#20908)

* py-anuga: add new package (#20782)

* libvips: added v8.10.5 (#20902)

* libzmq: add platform conditions to libbsd dependency (#20893)

* r-dtw: add v1.22-3 (#20890)

* r-dt: add v0.17 (#20889)

* r-dosnow: add v1.0.19 (#20888)

* add version 1.0.16 to r-doparallel (#20886)

* add version 1.3.7 to r-domc (#20885)

* add version 0.9-15 to r-diversitree (#20884)

* add version 1.3-3 to r-dismo (#20883)

* add version 0.6.27 to r-digest (#20882)

* add version 1.5 to r-rngtools (#20887)

* add version 1.5.8 to r-dicekriging (#20877)

* add version 1.4.2 to r-httr (#20876)

* add version   1.28 to r-desolve (#20875)

* add version   2.2-5 to r-deoptim (#20874)

* add version   0.2-3 to r-deldir (#20873)

* add version   1.0.0 to r-crul (#20870)

* add version   1.1.0.1 to r-crosstalk (#20869)

* add version   1.0-1 to r-copula (#20867)

* add version 5.0.2 to r-rcppparallel (#20866)

* add version   2.0-1 to r-compositions (#20865)

* add version 0.4.10 to r-rlang (#20796)

* add version 0.3.6 to r-vctrs (#20878)

* amrex: add ROCm support (#20809)

* add version 2.0-0 to r-colorspace (#20864)

* add version 1.3-1 to r-coin (#20863)

* add version   0.19-4 to r-coda (#20862)

* add version 1.3.7 to r-clustergeneration (#20861)

* add version 0.3-58 to r-clue (#20860)

* add version 0.7.1 to r-clipr (#20859)

* add version 2.2.0 to r-cli (#20858)

* add version 0.4-3 to r-classint (#20857)

* add version 0.1.2 to r-globaloptions (#20855)

* add version 2.3-56 to r-chron (#20854)

* add version 0.4.10 to r-checkpoint (#20853)

* add version 2.0.0 to r-checkmate (#20852)

* add version 1.18.1 to r-catools (#20850)

* add version 1.2.2.2 to r-modelmetrics (#20849)

* add version 3.0-4 to r-cardata (#20847)

* add version 1.0.1 to r-caracas (#20846)

* r-lifecycle: new package at v0.2.0 (#20845)

* add version 3.0-10 to r-car (#20844)

* add version 3.4.5 to r-processx (#20843)

* add version 1.5-12.2 to r-cairo (#20842)

* add version 0.2.3 to r-cubist (#20841)

* add version 2.6 to r-rmarkdown (#20838)

* add version 1.2.1 to r-blob (#20819)

* add version 4.0.4 to r-bit (#20818)

* add version 2.4-1 to r-bio3d (#20816)

* add version 0.4.2.3 to r-bibtex (#20815)

* add version 3.1-4 to r-bayesm (#20807)

* add version 1.2.1 to r-backports (#20806)

* add version 2.0.3 to r-argparse (#20805)

* add version 5.4-1 to r-ape (#20804)

* add version 0.8-18 to r-amap (#20803)

* r-pixmap: added new package (#20795)

* zoltan: source code location change (#20787)

* refactor path logic

* added some paths to make compilers and libs discoverable

* add  to LD_LIBRARY_PATH so that it finds libimf.so
and cleanup PEP8

* refactor path logic

* adding paths to LIBRARY_PATH so compiler wrappers will find -lmpi

* added vals for CC=icx, CXX=icpx, FC=ifx to generated module

* back out changes to intel-oneapi-mpi, save for separate PR

* Update var/spack/repos/builtin/packages/intel-oneapi-compilers/package.py

path is joined in _ld_library_path()

Co-authored-by: Robert Cohn <rscohn2@gmail.com>

* set absolute paths to icx,icpx,ifx

* dang close parenthesis

Co-authored-by: Robert Cohn <rscohn2@gmail.com>
Co-authored-by: mic84 <mrosso@lbl.gov>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Chuck Atkins <chuck.atkins@kitware.com>
Co-authored-by: darmac <xiaojun2@hisilicon.com>
Co-authored-by: Danny Taller <66029857+dtaller@users.noreply.github.com>
Co-authored-by: Tomoyasu Nojiri <68096132+t-nojiri@users.noreply.github.com>
Co-authored-by: Shintaro Iwasaki <siwasaki@anl.gov>
Co-authored-by: Glenn Johnson <glenn-johnson@uiowa.edu>
Co-authored-by: Kelly (KT) Thompson <KineticTheory@users.noreply.github.com>
Co-authored-by: Henrique Mendonça <henrique@users.noreply.github.com>
Co-authored-by: h-denpo <57649496+h-denpo@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Thomas Green <tomgreen66@hotmail.com>
Co-authored-by: Tom Scogland <tom.scogland@gmail.com>
Co-authored-by: Thomas Green <ca-tgreen@gw4a64fxlogin00.head.gw4.metoffice.gov.uk>
Co-authored-by: Abhinav Bhatele <bhatele@cs.umd.edu>
Co-authored-by: a-saitoh-fj <63334055+a-saitoh-fj@users.noreply.github.com>
Co-authored-by: QuellynSnead <quellyn@lanl.gov>
2021-02-03 12:04:23 -08:00
Andrew-Dunning-NNL
22ee367794
py-atpublic: new recipe (#21332) 2021-02-03 13:53:54 -06:00
Hadrien G
91d64dd223
acts: Add version 5.0 (#21466) 2021-02-03 11:50:28 -08:00
Brian Van Essen
db402ed2e3
Set the variant to alway be true since it is requires cuda. (#21358) 2021-02-03 20:44:53 +01:00
Frank Willmore
8be833b242
adding environment to OneMKL packages so that examples will build (#21377) 2021-02-03 09:50:37 -08:00
Josh Essman
61641ecff2
sundials: expose monitoring build option (#21429) 2021-02-03 09:39:57 -08:00
Harmen Stoppels
b597e01e33
Add cuda as opencl provider (#21464) 2021-02-03 09:06:49 -08:00
Tomoyasu Nojiri
2b7547c03c
http-load: Fix checksum error (#21459) 2021-02-03 11:03:50 -06:00
Tomoyasu Nojiri
1a6fe52486
http-post: Fix checksum error (#21460) 2021-02-03 11:03:28 -06:00
Tomoyasu Nojiri
4d194dc5e4
http-get: Fix checksum error (#21458) 2021-02-03 11:03:00 -06:00
Tomoyasu Nojiri
6f4b7870f2
http-ping: Fix checksum error (#21457) 2021-02-03 11:02:42 -06:00
Tomoyasu Nojiri
0a0e0b9b67
symlinks: Fix checksum error (#21456) 2021-02-03 11:02:07 -06:00
Tomoyasu Nojiri
54763a16f4
py-dulwich: Fix python depend (#21461) 2021-02-03 11:00:45 -06:00
iarspider
95fcd9ac13
superchic: added new package (#21463)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-02-03 15:29:52 +01:00
sameershende
d5d1cb09ad
Updated TAU v2.30.1. (#21453) 2021-02-02 15:21:30 -08:00
mic84
e2294ea0b0
amrex: new version 21.02 (#21426) 2021-02-02 14:49:51 -08:00
iarspider
4691177bbf
New package: apfel (#21440) 2021-02-02 14:42:07 -08:00
Axel Huebl
d8ba71993c
openPMD-api: 0.13.2 (#21450) 2021-02-02 14:25:18 -08:00
Andrew-Dunning-NNL
09190c0876
py-bash-kernel: new package (#21441)
* py-bash-kernel: new package

* py-bash-kernel: remove git bash kernel dependency
2021-02-02 15:42:08 -06:00
Bryan Herman
182ab78940
add py-python-fsutil recipe (#21449) 2021-02-02 15:41:21 -06:00
Mark W. Krentel
040204c261
intel-xed: add patch to 12.0.1 to fix segfault (#21436)
Fix segfault due to uninitialized data when trying to decode some cases of data that aren't a valid instruction.
2021-02-02 12:40:24 -08:00
bryanherman
d048048911
py-nbsphinx: new package (#21444)
* added py-nbsphinx package

* added a comment about nbsphinx use
2021-02-02 11:24:28 -06:00
Andrew-Dunning-NNL
959df6bb12
py-grandalf: new recipe (#21348)
* py-grandalf: new recipe

* py-grandalf: add runtime dependency

* py-grandalf: add runtime dependency)
2021-02-02 11:22:36 -06:00
Andrew-Dunning-NNL
59a54905ea
py-dictdiffer: fix offline dependencies (#21345)
* py-dictdiffer: fix offline dependencies

* Update var/spack/repos/builtin/packages/py-dictdiffer/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-02-02 11:21:58 -06:00
Andrew-Dunning-NNL
8b6c468cdf
py-ftfy: new recipe (#21333)
* py-ftfy: new recipe

* py-ftfy: depend on python>3.5
2021-02-02 11:19:02 -06:00
Andrew-Dunning-NNL
71309f75b2
py-dulwich: new recipe (#21330)
* py-dulwich: new recipe

* py-dulwhich: add python dependency

* py-dulwich: fix flake8 whitespace
2021-02-02 11:15:34 -06:00
Andrew-Dunning-NNL
49b3ab684e
py-flatten-dict: new recipe (#21329)
* py-flatten-dict: new recipe

* Update var/spack/repos/builtin/packages/py-flatten-dict/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-flatten-dict: fix dependencies

* py-flatten-dict: fix dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-02-02 11:14:12 -06:00
apreifsteck
df0cc9ee02
OSU mvapich2 GDR 2.3.5 package.py update (#21270)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: NOWLAB PACKAGER <mvapich-help@cse.ohio-state.edu>
2021-02-01 18:48:16 -08:00
Sergei Shudler
8f2acc3123
mfem: Add e4s testsuite-inspired smoke test (#21228) 2021-02-01 17:49:20 -08:00
Desmond Orton
71b12e9b27
New R Package Pegas@0.14 (#21359) 2021-02-01 16:42:44 -08:00
Desmond Orton
6cc23e6137
New Feature r-quickplot (#21430) 2021-02-01 18:02:14 -06:00
iarspider
eac95c866a
FastJet: add optional patch to make random generator thread-local (#21395) 2021-02-01 11:18:04 -08:00
Phil Carns
03fce1f0c9
replace margo pkg with updated mochi-margo pkg (#20273) 2021-02-01 12:38:02 -06:00