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Author SHA1 Message Date
Ross Miller
c49c37af9b py-adios package: restrict python dependency to <=3.6.x (#12932) 
The adios code (currently) won't compile against the Python 3.7 C API.
This change adds a dependency on 3.6 or less.
 2019-09-27 17:19:36 -07:00
Kevin Huck
b4c28182dc Tau package: turn off unsupported variants by default on OSX (#12890) 2019-09-27 17:16:44 -07:00
G-Ragghianti
61d41eea7f New package: libibumad (#12886) 2019-09-27 17:02:34 -07:00
Glenn Johnson
fc99eddb12 New package: maker and dependencies (#12904) 2019-09-27 14:59:58 -07:00
Seth R. Johnson
5201d2615e qt4: fix 'arch' string due to microarchitecture change (#12957) 
qt4 fails to build because it's expecting something like 'x86_64' rather 
than 'broadwell'.
 2019-09-26 21:15:17 +02:00
Massimiliano Culpo
90236bc9f5
Update target comparison semantic for a few packages (#12947) 
Use spec.target.family instead of spec.architecture.target
 2019-09-26 10:25:12 +02:00
Massimiliano Culpo
31e5318c24
Removed references to '(-march|-mtune|-mcpu)=native' (#12948) 
Now that Spack injects microarchitecture specific optimizations for
the selected target, packages should avoid adding flags that could
step over those.
 2019-09-26 10:02:08 +02:00
Massimiliano Culpo
78d051b534
parsimonator: simplified recipe by removing SIMD variants (#12949) 
Now the support for SSE3 or AVX is tested on the selected target
 2019-09-26 09:33:18 +02:00
Seth R. Johnson
f2967b6c16 New package: flibcpp (Fortran bindings to C++ standard library) (#12926) 2019-09-25 19:25:24 -07:00
liuyangzhuan
b384504218 butterflypack package: add version 1.0.3 (#12927) 2019-09-25 19:16:47 -07:00
Glenn Johnson
dd626a0f07 interproscan package: add version 4.8, patch for version 5 (#12897) 
This PR adds interproscan-4.8, which has a completely different build
system than version 5. Note that this builds for running on a host as
opposed to a queue system. I am fairly certain that a queue system can
be configured later.

This PR also adds a patch for intrproscan-5 to build when the user
building the packages has a large GID by setting posix mode for tar.
 2019-09-25 19:04:57 -07:00
Sinan
c5860d89b7 libspatialite package: add version 3.0.1 and missing dependencies (#12843) 2019-09-25 18:48:48 -07:00
Sinan
507b28de18 py-imageio package: add versions 2.4.1 and 2.5.0 (#12884) 2019-09-25 18:44:57 -07:00
Matthieu Dorier
e6cae978b8 llvm, mesa: update target comparison semantics (#12914) 
* llvm: fixed issues with syntax and formatting
  * use spec.architecture.target.family
  * use spec.target instead of spec.architecture.target
* mesa: use == instead of __contains__
 2019-09-25 16:41:02 -07:00
Adam J. Stewart
4e858e24b0
libflame: fix macOS build (#12950) 2019-09-25 18:37:33 -05:00
Matthieu Dorier
71cc29691b openblas: fixed a query to target family (#12910) 2019-09-25 22:15:23 +02:00
Christoph Junghans
ccfe8aaf76
portage: fix RelWithDebInfo build (#12944) 2019-09-25 11:29:43 -06:00
Christoph Junghans
e123058721
kokkos-kernels: initial commit (#12934) 2019-09-25 09:00:01 -06:00
Mathias Jacquelin
7a11a2ccdb Upcxx package: remove warning, add version 2019.9.0 (#12880) 
A function added to this package ran as part of importing it and
printed a warning for most Spack invocations, this removes the
warning message.

Also:

* Use compilers directly instead of Spack compiler wrappers (since
  references to the compiler are embedded in text and binary files
  of the installation)
* Add 'cross' variant for setting CROSS environment variable for
  build
* Set UPCXX_INSTALL for generated module files
* Set UPCXX_GASNET_CONDUIT/UPCXX_NETWORK in generated module files
  on Cray systems
* Also set UPCXX_NETWORK in build environment for Cray systems
 2019-09-24 13:25:05 -07:00
Simo Tuomisto
6cd5edacca heaptrack: added new package at version 1.1.0 (#12844) 2019-09-24 15:54:23 +02:00
Glenn Johnson
10d5e90e65 Add missing dependency to perl-xml-parser (#12903) 
This PR adds the following dependency:

+    depends_on('perl-libwww-perl', type=('build', 'run'))
 2019-09-24 12:51:55 +02:00
Glenn Johnson
fa5a9cd878 Added missing dependencies for perl-list-moreutils (#12900) 
The following dependencies were added:

+    depends_on('perl-exporter-tiny', type=('build', 'run'))
+    depends_on('perl-list-moreutils-xs', type=('build', 'run'))
 2019-09-24 12:45:39 +02:00
Glenn Johnson
b508eaa806 Added depencies to perl-libwww-perl (#12899) 
The following dependencies are needed for perl-libwww-perl according to
https://metacpan.org:

+    depends_on('perl-encode-locale', type=('build', 'run'))
+    depends_on('perl-file-listing', type=('build', 'run'))
+    depends_on('perl-html-parser', type=('build', 'run'))
+    depends_on('perl-http-cookies', type=('build', 'run'))
+    depends_on('perl-http-daemon', type=('build', 'run'))
+    depends_on('perl-http-date', type=('build', 'run'))
+    depends_on('perl-http-message', type=('build', 'run'))
+    depends_on('perl-http-negotiate', type=('build', 'run'))
+    depends_on('perl-lwp-mediatypes', type=('build', 'run'))
+    depends_on('perl-net-http', type=('build', 'run'))
+    depends_on('perl-try-tiny', type=('build', 'run'))
+    depends_on('perl-uri', type=('build', 'run'))
+    depends_on('perl-www-robotrules', type=('build', 'run'))
 2019-09-24 12:45:02 +02:00
Glenn Johnson
ca11ce06b8 Add missing dependencies to perl-http-daemon (#12898) 
Added the following dependencies:

+    depends_on('perl-http-date', type=('build', 'run'))
+    depends_on('perl-module-build-tiny', type='build')
 2019-09-24 12:44:28 +02:00
Axel Huebl
1d316c4eb3 spdlog: added version 1.4.1 (#12917) 
Add newest release with ability to pre-build as shared or static
library.
 2019-09-24 12:19:19 +02:00
Adam J. Stewart
53db1eafb9
Fix installation permissions on BLIS and libflame libs (#12919) 
* Fix installation permissions on BLIS and libflame libs

* Fix undefined symbols
 2019-09-23 18:54:47 -05:00
Jed Brown
958b81a564 libceed package: add version 0.5 (#12875) 
Also enable vectorization via -O3 for gcc/clang
 2019-09-23 10:38:44 -07:00
Seth R. Johnson
27d4e9a1d1 QT package: only enable fontconfig when freetype is enabled (#12574) 
The 'fontconfig' option is only valid when freetype is enabled.
 2019-09-23 10:04:29 -07:00
Xavier Delaruelle
53ab298e88 environment-modules: add version 4.3.1 (#12893) 2019-09-21 21:32:27 -05:00
Paul
ef652ee42a czmq package: add autoreconf stage (#12846) 2019-09-20 18:14:41 -07:00
Jordan Ogas
d9c22e3f9c charliecloud package: add version 0.11 and test dependency (#12861) 2019-09-20 18:01:40 -07:00
Sinan
326c2718d5 New package: py-gast (#12874) 2019-09-20 17:59:50 -07:00
t-karatsu
e26b23e980 intel-tbb: fix typo. 2019-09-20 17:53:23 -07:00
Sinan
af8f245f48 py-protobuf package: fix import error for Python 2.x (#12873) 2019-09-20 17:52:11 -07:00
Massimiliano Culpo
7daf860991 targets: adjust packages to use new specific targets semantics 
Seamless translation from 'target=<generic>' to either
- target.family == <generic> (in methods)
- 'target=<generic>:' (in directives)

Also updated docs to show ranges in directives.
 2019-09-20 00:51:37 -07:00
Valentin Clement (バレンタイン クレメン)
83bea039cf CLAW Compiler: added version 2.0.1 (#12878) 2019-09-19 18:27:22 +02:00
Adam J. Stewart
cbbd384628
blis: fix darwin install name (#12869) 2019-09-18 22:46:34 -05:00
Adam J. Stewart
a4e585bad5
googletest: fix darwin install name (#12871) 2019-09-18 22:46:16 -05:00
Adam J. Stewart
964500399b
libkml: fix darwin install name (#12872) 2019-09-18 22:44:57 -05:00
Adam J. Stewart
b33d005267
wcslib: fix darwin install name (#12868) 2019-09-18 22:44:38 -05:00
Adam J. Stewart
1fe94748d2
diffutils: add missing libiconv dependency (#12866) 2019-09-18 15:36:41 -05:00
Julien Loiseau
cacbb4ff7a Correcting branch used for FleCSPH (#12865) 2019-09-18 14:00:47 -06:00
Adam J. Stewart
ec11574a02
Add SQLite 3.29.0 (#12862) 2019-09-18 14:36:41 -05:00
Adam J. Stewart
6d7e543cef
GDAL: Add support for MKL driver (#12837) 2019-09-18 13:47:31 -05:00
Adam J. Stewart
680430df0f
Add libkml package (#12836) 
* Add libkml package

* googletest needs to be linked to RPATH
 2019-09-18 13:46:45 -05:00
Adam J. Stewart
9a7b5ac7cb
libunistring: add missing dependency on libiconv (#12863) 2019-09-18 13:37:19 -05:00
Adam J. Stewart
9d67ac2407
Add minizip package (#12835) 2019-09-18 12:53:01 -05:00
Adam J. Stewart
3eb0bcf4a1
Add uriparser package (#12834) 
* Add uriparser package

* googletest needs to be linked to RPATH
 2019-09-18 12:52:40 -05:00
Patrick Gartung
7c0c31361a
Update buildcache creation and installation to allow mach-o binary relocation using py-machotools on linux or macos. (#12858) 
Update py-machotools dependencies and versions.
 2019-09-18 07:24:45 -05:00
Sinan
9807bb5d03 add a version (#12856) 2019-09-17 22:54:18 -05:00
Greg Becker
eb4dd4a51a Boost: add libs property (#12849) 2019-09-17 20:30:29 -05:00
Sinan
02ae944c74 fix typo in version number (#12855) 2019-09-17 20:28:57 -05:00
Christoph Junghans
b11a98abf0
cmake: add v3.15.{2,3} (#12847) 2019-09-17 13:13:39 -06:00
George Hartzell
ae37896800 cryptsetup package: dont vendor libuuid in util-linux (#12839) 
Fixes #12829

This adds a variant to the util-linux package that controls whether it
builds its own libuuid.  Variant defaults to True.  It enables other
packages to choose to get libuuid from the libuuid package instead.

This also changes the cryptsetup package to build util-linux with
~libuuid (so it uses an explicitly-Spack-built instance of libuuid
instead).
 2019-09-17 11:22:10 -07:00
Adam J. Stewart
14ef0c238e
Add py-pycbc package (#12823) 2019-09-16 13:10:02 -05:00
Adam J. Stewart
269f34c310
Add py-astropy 2.0.14 (#12816) 2019-09-16 13:09:30 -05:00
Adam J. Stewart
98eb8ef0af
Add py-beautifulsoup4 4.8.0 (#12815) 2019-09-16 13:08:36 -05:00
Adam J. Stewart
94291ebd1a
Add py-mpld3 package (#12822) 2019-09-16 13:08:17 -05:00
Adam J. Stewart
a08a7da413
Add py-asdf package (#12817) 2019-09-16 13:07:48 -05:00
Adam J. Stewart
fea315e274
Add py-bintrees package (#12818) 2019-09-16 13:07:21 -05:00
Adam J. Stewart
0885615e22
Add py-lscsoft-glue package (#12821) 2019-09-16 13:06:59 -05:00
Adam J. Stewart
3b11dfdca0
Add py-jplephem package (#12819) 2019-09-16 13:06:33 -05:00
Adam J. Stewart
947413236b
Add py-ligo-segments package (#12820) 2019-09-16 13:06:09 -05:00
Adam J. Stewart
4cce23d1d3
Add py-pyopenssl package (#12824) 2019-09-16 13:05:37 -05:00
Adam J. Stewart
0d64b12c58
Add py-semantic-version package (#12825) 2019-09-16 13:05:12 -05:00
Adam J. Stewart
b8481d7913
Add py-sortedcontainers package (#12826) 2019-09-16 13:04:50 -05:00
Adam J. Stewart
09e3d6514b
Add py-weave package (#12828) 2019-09-16 12:57:18 -05:00
Adam J. Stewart
321c857d4c
Add py-soupsieve package (#12827) 2019-09-16 12:56:53 -05:00
Adam J. Stewart
e3969e33fd
Relax Python version constraints on py-html5lib (#12811) 2019-09-16 12:56:21 -05:00
Chuck Atkins
76b79c125a
xdmf3: new package (#12778) 2019-09-16 12:02:07 -04:00
Ruben Di Battista
9675db4e7f qt: Fix build with GCC9 for version 4 (#12832) 
* qt: Fix build w/ GCC9 for @4:

* qt: Fix patch filename and qt version

* Fix typo in patch name
 2019-09-14 14:00:46 -05:00
Toyohisa Kameyama
c26a3ff894 flang: build on arm. (#12808) 2019-09-14 11:15:06 -05:00
Adam J. Stewart
5f18696169 py-bleach package: add version 3.1.0 (#12814) 2019-09-13 19:15:54 -07:00
Adam J. Stewart
3a47a6196f py-cython package: fix --test (#12813) 
Fix bug in string conversion of "make_jobs"
 2019-09-13 19:15:06 -07:00
Adam J. Stewart
a3c6b07c96 py-emcee package: add version 2.2.1 (#12812) 2019-09-13 19:13:45 -07:00
Adam J. Stewart
f9b8442e1b wcslib package: add version 6.4 (#12810) 2019-09-13 19:09:54 -07:00
Glenn P Johnson
6937416a65 Add diamond dependency 2019-09-13 19:08:57 -07:00
Glenn P Johnson
09047d76e9 Update braker package 
- add version 2.1.4
- change url to github
- add perl dependencies
- new version has a new source layout
- filter shebang to use spack perl
 2019-09-13 19:08:57 -07:00
Glenn P Johnson
b046ee20f5 Fixes for augustus package 
- add missing perl dependency
- only filter Makefile if referred to dependency is in the spec
- rewrite the shebang line of scripts to use spack perl
- remove tabix dependency as tabix and bgzip are part of htslib
 2019-09-13 19:07:35 -07:00
Glenn P Johnson
2256890d4e Update genemark-et package 
- add version 4.46
- add missing perl dependencies
- new version has different source layout
- filter shebang to use spack perl
 2019-09-13 19:05:02 -07:00
Sinan
6df57bb2d0 New package: py-pykwalify (#12540) 2019-09-13 12:22:08 -07:00
Frédéric Simonis
3f06d5c12a preCICE: added versions 1.6.0 and 1.6.1 (#12809) 2019-09-13 16:04:50 +02:00
Glenn Johnson
3cc95c6427 diamond: added version 0.9.25 (#12805) 2019-09-13 07:37:52 +02:00
Sinan
48e9090252 New package: py-ruamel-yaml (#12543) 2019-09-12 15:46:39 -07:00
Owen Solberg
78f3f4c309 Singularity package: add version 3.4.0 (#12785) 
This version in combination with the included patch can install
without root.
 2019-09-12 13:45:00 -07:00
Owen Solberg
6608876747 New package: cryptsetup (#12762) 
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-09-12 13:41:53 -07:00
Sinan
b95b4bb9e0 add compilation option to sqlite (#12794) 
* add compilation option to sqlite

* rename variant

* fix bug

* re-rename variant
 2019-09-12 15:31:03 -05:00
ktsai7
96ba5a1265 Update legion gasnet config (#12523) 2019-09-12 13:46:37 -06:00
Simo Tuomisto
5a6d060b52 py-gpaw: Fixed broken fftw linking in newer versions of py-gpaw (#12795) 2019-09-12 09:36:45 -05:00
brietzke
3269f712f0 fgsl: new version + fix for recent spack commit (#12790) 2019-09-11 20:15:50 -05:00
Chris Green
e727e79b73 jsoncpp: new versions, support cxxstd variant. (#12780) 2019-09-11 12:32:49 +02:00
Owen Solberg
e3d06dc0d7 create package popt (#12783) 2019-09-10 21:33:33 -05:00
Jonas Lippuner
97641aab63 fix bug in p4est (don't use MPI spec if not compiling with MPI) (#12784) 2019-09-10 19:39:42 -05:00
Hironori-Yamaji
9962696128 openmx: new package (#12768) 
* openmx: new package

* openmx: use copy method
 2019-09-10 12:59:13 -05:00
Janne Blomqvist
3f1762bcc2 cuda: New version 10.1.243 (#12777) 
* cuda: New version 10.1.243

Adds CUDA 10.1.243. The installer command-line arguments have slightly
changed, hence in the install method the version needs to be inspected
in order to give the correct arguments for the new installer.

* cuda: Combine common command-line arguments

The CUDA 10.1+ installer has slightly different command-line arguments
than previous versions.  Keep the common parts together and only split
where they are different.

* Make flake8 happy
 2019-09-10 10:52:55 -07:00
Owen Solberg
c23bea80bd py-atropos: new package (#12745) 
* create new package py-atropos

* remove whitespace

* make tqdm and pysam dependencies optional, exposed as variants
 2019-09-10 12:18:31 -05:00
Hironori-Yamaji
fefd998509 ccs-qcd: disable parallel builds (#12775) 2019-09-10 14:19:09 +02:00
xfzhao
c30f9c6833 update bbmap (#12721) 
* update bbmap

* remove one extra comment line
 2019-09-09 12:55:06 -05:00
Michael Kuhn
62f0286f5e Fix pkgconfig dependencies (#12714) 
pkgconfig is the virtual dependency, pkg-config is an implementation.
 2019-09-09 12:54:46 -05:00
brietzke
4de32033b1 Update py-bokeh: new version & dependencies" (#12724) 
* update py-bokeh: new version & dependencies

* Revert "update py-bokeh: new version & dependencies"

This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f.

* update py-bokeh: new version & dependencies

* trigger travis-ci

* adjust python dependency-type to br
 2019-09-09 11:59:27 -05:00