* Patch CMake version check in Umpire
* Update version constraint for cmake_version_check patch
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add maintainers to Umpire
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* [py-torch-nvidia-apex] added version 201019 and added dependency on py-pybind11
* [py-torch-nvidia-apex] changed versioning format
* [py-torch-nvidia-apex] removed redundent version condition
* [py-torch-nvidia-apex] removed condition on dependency
* Adding AOCC support for M4
* combining 4 if-statements into a single if-statement with or conditions
* keeping parentheses around the or expressions
* fixing flake8 test failures
Co-authored-by: mohan babu <mohbabul@amd.com>
For some mysterious reason Qt4 stopped building the xmlpatterns
component, needed by some downstream packages. With this patch, the
component successfully builds with
```
qt@4.8.7~dbus~debug~examples~framework~gtk~opengl~phonon+shared~sql~ssl~tools~webkit freetype=none arch=linux-rhel7-haswell %gcc@10.2.0
```
* Update package.py
Remove breaking patch.
Patching the shebang is useless is the dependencies are properly loaded before execution. Furthermore, the long paths which can be generated when installing with Spack can exceed the maximum length of the shebang.
* Add newer versions of strelka.
* [libcudf] created template
* [libcudf] depends on cuda
* [libcudf] set cmake dir
* [libcudf] depends on boost
* [libcudf] depends on py-pyarrow
* [libcudf] depends on librmm
* [libcudf] depends on dlpack
* [libcudf] added more dependency information from https://github.com/rapidsai/libcudf/blob/v0.15.0/CONTRIBUTING.md#customizing-the-build
* [libcudf] removed python dependencies
* [libcudf] fixed url that got mangled in package renaming
* [libcudf] added default build options from build.sh
* [libcudf] added version 0.16.0a
* [libcudf] removed version 0.16.0a as it's an alpha version
* [libcudf] added homepage and description. removed fixmes
* [libcudf] flake8
* [libcudf] arrow requires +orc
* [libcudf] requires +parquet
* [libcudf] checksum changed
On Cori(Cray-XC40), I need to pass the entire path for the compilers, this is what is saved in c_compiler, cpp_compiler, f_compiler. Therefore, when for the MPI wrappers only the binary name is provided I run into the same issue. There is no drawback of passing the entire path, this is set by the user through the compiler path anyways.
* added -lpthread flag in kv/tests/CMakeLists.txt
* Update var/spack/repos/builtin/packages/papyrus/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
PHP supports an initial shebang, but its comment syntax can't handle our 2-line
shebangs. So, we need to embed the 2nd-line shebang comment to look like a
PHP comment:
<?php #!/path/to/php ?>
This adds patching support to the sbang hook and support for
instrumenting php shebangs.
This also patches `phar`, which is a tool used to create php packages.
`phar` itself has to add sbangs to those packages (as phar archives
apparently contain UTF-8, as well as binary blobs), and `phar` sets a
checksum based on the contents of the package.
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
* New package: py-minrpc
* Delete package.py.save
* Update var/spack/repos/builtin/packages/py-minrpc/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* package/gunrock add v1.2
* Update var/spack/repos/builtin/packages/gunrock/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
`sbang` is not always accessible to users of packages, e.g., if Spack
is installed in someone's home directory and they deploy software
for others. Avoid this by:
1. Always installing the `sbang` script in the `install_tree`
2. Relocating binaries to point to the copy in the `install_tree`
and not the one in the Spack installation.
This PR also:
- ensures that `sbang` is reinstalled if it is modified in Spack
- adds tests
- updates the way `gobject-introspection` patches Makefiles
to support `sbang`
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
* Add BLT package
* Switch install function
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add type='run' to cmake dependency
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add git attribute to BLT
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* cp2k: locate correct include dir when using intel-parallel-studio+mkl for fftw-api
* libxc: drop arch-specific intel opt. flags
fixes#17794
* libint: drop arch-specific intel opt. flags, always build Fortran example with FC
fixes#17509
* package/pmdk add variants, version 1.9
* add dependency
* Update var/spack/repos/builtin/packages/pmdk/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
GROMACS still requires a version of FFTW when compiling it to utilize
NVIDIA GPUs. In fact, the type of calculation that depends on FFTW --
Particle-Mesh Ewald (PME) -- is generally run on the host system's CPUs,
even when GPUs are available.
* New package: py-rise
* Fix URL and add description
* Update var/spack/repos/builtin/packages/py-rise/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* gaussian-src: initial commit to build from source
* do not install the source to ensure to not accidentally distribute
it to users
* set required runtime env vars based on the login.profile
* gaussian-view: update to 6.1.1
PR #19482 updated gcc to only apply the zstd patch until @10.2 but the
releases/gcc-10 branch actually does not contain the patch yet, that is,
gcc@10.3 will most likely have the same problem. Apply the patch for all
10.x releases instead.
* gemini dep -py-bcolz +
* Update var/spack/repos/builtin/packages/py-bcolz/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-bcolz/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-bcolz URL fix
* Update var/spack/repos/builtin/packages/py-bcolz/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* [py-pyarrow] telling setup.py that we want cuda support
* [py-pyarrow] added orc variant
* [py-pyarrow] passing the orc variant down the line
* [py-pyarrow] added variant description
* ocl-icd: fix build problems
* New package: opencl-c-headers
* New package: opencl-clhpp
* New bundled package: opencl-headers
- bundle C and C++ header files
* ocl-icd: Add +headers variant to use this as opencl provider
* ocl-icd: add new upstream release 2.2.13
* ocl-icd: add asciidoc-py3 and xmlto dependency needed for manpage generation
* ocl-icd and opencl-headers provides OpenCL 3.0
- also add more explicit version providing for older ocl-icd versions
* opencl-headers: add maximum of supported opencl versions for all versions
* opencl-headers: there aren't final releases with OpenCL 3.0
* [orc] created template
* [orc] depends on maven
* [orc] building with -fPIC
* [orc] fixed name of c flags option
* [orc] depends on openssl
* [orc] added dependencies and disableing installing vendored libs
* [orc] disabling hdfs
* [orc] depending on specific versions of dependencies
* [orc] no building of third party libs
* [orc] helping cmake find the dependencies
* [orc] disabling features that would require static protobuf libraries
* [orc] dependency versions are ranges
* [orc] added homepage and description. removed fixmes
* [orc] flake8
* [orc] switching to compilier indipendent code
* r-sf: fix build error
* Update var/spack/repos/builtin/packages/r-sf/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add recipe for qgraf
* Revert "Add recipe for qgraf"
This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd.
* Add herwig3
* Prepare fixes based on MR (needs checking)
* Set all dependencies (except python) as build-type
* OK now
* Move import to the top of the file
* Fix dependency name
Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
* Add recipe for qgraf
* Revert "Add recipe for qgraf"
This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd.
* Add qgraf
* Update package.py
Changes from review
* Changes from MR
* Fix for URLs containing @ symbol
Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add recipe for qgraf
* Revert "Add recipe for qgraf"
This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd.
* Update madgraph to 2.8.1
* Changes from MR
* Changes from MR
Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
* Updated blaspp package
* Modified lapackpp for newest release
* Formatting
* Updates to lapackpp package for new version
* Added dependency on cblas
* Removed cblas dependency
* updated to lapackpp
* Added new version for blaspp and lapackpp
* Removed debugging output
* Converted version matching logic for for loop
* mpich: yaksa configure fix
modified: var/spack/repos/builtin/packages/mpich/package.py
* typo
* python is not needed when building from preconfigured tarballs
* add maintainers
* Added FFLAGS for apple-clang:11
* Added issue #
* Update var/spack/repos/builtin/packages/mpich/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* update version to avoid compile error
* Update var/spack/repos/builtin/packages/r-rgdal/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add recipe for qgraf
* Revert "Add recipe for qgraf"
This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd.
* Add FORM
* Update package.py
Changes from review
Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
* Add recipe for qgraf
* Revert "Add recipe for qgraf"
This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd.
* Fixes for thepeg
Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
* mfem: specify PETSC_DIR, link correct sundials libraries
* fix: only use PETSC_DIR directly for static builds
* fix: only use sundials nvecmpiplusx for MFEM 4.2+
* Add recipe for qgraf
* Revert "Add recipe for qgraf"
This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd.
* LHAPDF should extend Python to get env variables correct
Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
* Adding AOCC compiler to SPACK community
The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications.
* Added unit tests for detection and flags for AOCC
* Addressed reviewers comments w.r.t version checks and url,checksum related line lengths
Co-authored-by: Test User <spack@example.com>
* add updated version of py-dnaio
* Add py-setuptools-scm build dependency
* Fine tune the py-xopen dependency constraint
The needed version of xopen does not become specific until v0.4 of
dnaio.
* Set constraint on py-setuptools-scm
The py-setuptools-scm dependency is needed beginning with v0.4.
* updated version of py-cutadapt
* Update dependency specs
* Add py-setuptools-scm build dependency
* More constraint fixes
* Fix version range for py-xopen
* Added tau version 2.29.1 hash
* Update var/spack/repos/builtin/packages/tau/package.py
Make version name match branch name (master)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* add updated version of py-xopen
* Update dependency constraints
* Further refine the python constraints
Also, put them all together.
* Put python constraints at top of list
* New package - Gate
This PR adds the Gate package as well as the ITK dependency.
* Fix flake 8 errors
* Be more explicit with CMake options
Make sure Cmake values related to variants are explicitly set to either
ON/OFF.
The ITK_USE_MKL flag will turn on the following:
- USE_FFTWD=ON
- USE_FFTWF=ON
- USE_SYSTEM_FFTW=ON
Since the package depends on fftw-api, those options will always be set.
* A collection of tensorflow fixes and updates
* tensorflow 2.3.1 requires the workaround for external protobuf as well
* Update tensorflow-estimator to 2.3.0
* Update tensorboard to 2.3.0
* Update tensorboard-plugin-wit to use actual releases
* Patch that potentially fixes#16073
* add myself to maintainer list
* Changed make command to support new slate build variable 'blas='
* Updated to use package's "make install" target
* Added variant 'blas' to support switching blas provider and removed legacy 'mkl' variant.
* Fixed problem caused by systems which use a non-bash /bin/sh
* Removed blas= variant in preference for setting blas provider via spec syntax (e.g., ^openblas).
* Fixed formating
* Changed to MakefilePackage and cleaned up make argument generation
* Implemented "edit" method
* Removed blank line
* Sqitched to using mpi compiler wrapper variables
* Update var/spack/repos/builtin/packages/slate/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update libensemble to v0.7.1
* Update var/spack/repos/builtin/packages/py-libensemble/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add nvhpc compiler definition: "spack compiler add" will now look
for instances of the NVIDIA HPC SDK compiler executables
(nvc, nvc++, nvfortran) in supplied paths
* Add the nvhpc package which installs the nvhpc compiler
* Add testing for nvhpc detection and C++-standard/pic flags
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
