Ben Boeckel
9ec4ae83af
netcdf: link to MPI
...
Newer GNU linker refuses to use transitive linking; if netcdf calls
MPI_Allreduce, it must link the providing library directly.
Also switched to CMake because I don't know autoconf well enough to know
how to put MPI stuff into it.
2015-10-15 09:20:16 -04:00
Gregory L. Lee
5dd39bfca5
bug fix for github issue 122
2015-10-08 08:12:30 -07:00
Todd Gamblin
5d64012868
Merge branch 'features/libxcb-1.11.1' into develop
2015-10-08 00:13:47 -07:00
Massimiliano Culpo
17de9a37f1
gcc : fixed spec file
2015-10-06 18:49:18 +02:00
Massimiliano Culpo
d44571257a
spec file : everything is dumped, only link rule is modified
2015-10-06 18:49:04 +02:00
Massimiliano Culpo
f068d1ba57
GCC : added variants for libelf, binutils, isl. gcc@5.0: still has issues
2015-10-06 18:48:47 +02:00
Gregory L. Lee
6fcf16b710
added libxcb version 1.11.1
2015-10-05 12:59:26 -07:00
Mario Melara
75d30b08fb
Added current version 3.2 of libffi version 3.1 has a bug that interferes with glib
2015-10-01 21:51:55 -07:00
Adam Moody
5563c66675
update scr to 1.1.8
2015-09-29 18:18:34 -07:00
Mario Melara
13eb461ec3
Adding bowtie2 package along with patch
2015-09-24 11:21:54 -07:00
Mario Melara
521632b3dc
Added samtools bioinformatics software
2015-09-23 16:30:44 -07:00
Todd Gamblin
6d4eed3845
Merge pull request #102 from RasmusWL/features/fish
...
Add fish (shell) package
2015-09-23 01:37:59 -07:00
Todd Gamblin
82ea7aec51
Merge pull request #106 from justintoo/add-package-doxygen
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(Package) Add Doxygen (v1.8.10)
2015-09-23 01:37:31 -07:00
Todd Gamblin
d474eeb424
Merge pull request #110 from scalability-llnl/features/boostupdate
...
update boost package for new releases
2015-09-23 00:32:22 -07:00
Todd Gamblin
5d6baacc56
Merge pull request #111 from scalability-llnl/features/protobuf
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add protobuf package
2015-09-23 00:31:26 -07:00
Todd Gamblin
46cf0a23d9
Merge pull request #112 from scalability-llnl/features/glog
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add glog package
2015-09-23 00:30:37 -07:00
Todd Gamblin
f02af701e5
Merge pull request #113 from scalability-llnl/features/gflags
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add gflags package
2015-09-23 00:29:50 -07:00
Todd Gamblin
5f826a0ab7
Merge pull request #114 from scalability-llnl/features/snappy
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Features/snappy
2015-09-23 00:27:27 -07:00
Adam Moody
84823ed828
add lmdb package
2015-09-22 12:17:01 -07:00
Adam Moody
3ade141829
add leveldb package
2015-09-22 11:59:09 -07:00
Adam Moody
30acc6f2f0
add snappy package
2015-09-21 16:45:59 -07:00
Adam Moody
22ba02b22b
add gflags package
2015-09-21 16:40:23 -07:00
Adam Moody
b5d7cd55ce
add glog package
2015-09-21 16:30:11 -07:00
Adam Moody
e4e22ed17e
add protobuf package
2015-09-21 16:19:50 -07:00
Justin Too
99ca0f3153
(Package) Add Doxygen (v1.8.10)
2015-09-11 20:29:18 +00:00
Rasmus Wriedt Larsen
b06117f77a
Add fish (shell) package
2015-09-03 14:19:27 -07:00
Adam Moody
ac088bae6a
update boost
2015-09-01 16:02:14 -07:00
Todd Gamblin
6af49d41fd
Add elfutils.
2015-08-27 00:10:53 -07:00
Todd Gamblin
13fd742610
Merge branch 'features/pidx' into develop
2015-08-26 23:48:52 -07:00
Todd Gamblin
babbc5bb45
Minor fix-ups for PIDX
2015-08-26 23:48:36 -07:00
Gregory L. Lee
2c3e7a6f87
added graphviz dependency and dysect variant to STAT
2015-08-25 11:48:12 -07:00
Gregory L. Lee
1c9c5a385d
added graphviz and dependencies
2015-08-25 11:38:39 -07:00
Gregory L. Lee
689dbb8fb6
use filter_file instead of patch
2015-08-24 08:51:41 -07:00
Peer-Timo Bremer
40b21d7cbe
Initial version of PIDX package
2015-08-17 15:38:12 -07:00
Gregory L. Lee
bd1cd83d71
added lapack and blas deps, fixed gfortran compiler dependency
2015-08-17 11:54:14 -07:00
Gregory L. Lee
92ea86dc36
moved lapack package to netlib-lapack
2015-08-14 16:30:35 -07:00
Gregory L. Lee
ec47ab16ce
updated blas and lapack packages
2015-08-14 16:27:51 -07:00
Todd Gamblin
c8f65c1530
Fix 2.6 incompatibility
2015-08-13 00:21:02 -07:00
Todd Gamblin
17c2a0d6f3
Merge pull request #92 from trws/flux-build
...
pre-alpha flux build and requisite dependencies
2015-08-13 00:02:49 -07:00
Todd Gamblin
58f848fa29
Merge pull request #94 from alfredo-gimenez/dev-pandas
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Fixed py-pandas package
2015-08-13 00:00:35 -07:00
Todd Gamblin
f34b04e555
Merge pull request #87 from alfredo-gimenez/develop
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Added gui and cscope features to Vim package
2015-08-12 23:58:27 -07:00
Alfredo Gimenez
d6bf9c9887
Cscope vim variant depends on cscope
2015-08-07 07:58:04 -07:00
Alfredo Gimenez
d017c5080a
Fixed py-pandas package
2015-08-07 00:03:14 -07:00
Alfredo Gimenez
067ecb90b9
Added cscope (dependency for vim+cscope)
2015-08-06 09:28:28 -07:00
Tom Scogland
7182671f8f
pre-alpha flux build and requisite dependencies
...
NOTE: the ncurses package now installs *BOTH* versions, wide and non-wide
character for compatibility with packages that require either one. It may be
desirable for this to be an option in the future.
2015-08-03 11:59:52 -07:00
Mike Nolta
7ebb4fcedc
add missing gmp dependency to mpfr package
2015-08-01 16:00:13 -04:00
Tom Scogland
016eef6a16
adding the bear compilation database generator
2015-07-29 14:21:03 -07:00
Alfredo Gimenez
00ab6eb616
Vim with added feature support, including gvim
2015-07-23 11:38:02 -07:00
Tom Scogland
6ad5210216
adding a zsh package
2015-07-22 11:35:51 -07:00
Todd Gamblin
e097696390
Update concretize to check for more changes and iterate further.
2015-07-16 01:12:11 -07:00
Todd Gamblin
8828dbf2e8
Remove superfluous print in vim.
2015-07-14 23:48:07 -07:00
Todd Gamblin
2e90599283
Merge branch 'develop' of github.com:scalability-llnl/spack into develop
2015-07-14 23:43:59 -07:00
Todd Gamblin
6f8a4318c5
Remove python 2.6-incompatible format expression.
2015-07-13 18:25:18 +00:00
Tom Scogland
889485181e
adding gnu global tags and exuberant ctags
2015-07-10 13:54:38 -07:00
Tom Scogland
fda208f6b8
adding YAPF (Yet Another Python Formatter)
2015-07-09 14:55:27 -07:00
Gregory L. Lee
2e37523428
for LaunchMON added latest git commit and dependences
2015-07-08 11:25:41 -07:00
Gregory L. Lee
ddfc276688
removed workaround
2015-07-02 15:14:30 -07:00
Florent Pruvost
e06d351f7a
add cblas headers in install directory
2015-07-02 02:05:00 -07:00
Todd Gamblin
7625881cb3
Merge pull request #75 from alfredo-gimenez/develop
...
Thanks!
2015-07-02 01:27:47 -07:00
Todd Gamblin
6f94a2567b
Add py-lockfile and py-python-daemon packages.
2015-07-02 00:40:25 -07:00
Alfredo Gimenez
25c1678004
Commented out old version
2015-06-23 17:39:23 -07:00
Alfredo Gimenez
9f27ddc256
New mpfr release invalidates previous download link (not sure where old version is...)
2015-06-23 17:36:57 -07:00
Todd Gamblin
a51d4afe3e
Minor simplification (os.environ -> env)
2015-06-20 20:25:12 -07:00
Alfredo Gimenez
314ecc54fe
Thrift python support
2015-06-18 17:29:16 -07:00
Alfredo Gimenez
f832719ceb
Added silo 4.8 with HDF5 (for LULESH 2.0)
2015-06-18 12:31:01 -07:00
Alfredo Gimenez
0c028e24b4
Removed Lua dependency
2015-06-18 10:30:02 -07:00
Alfredo Gimenez
55e24548c3
Added Thrift (HBase management in C++)
2015-06-18 10:29:34 -07:00
Tom Scogland
912c29471a
adding python pyelftools package
2015-06-17 15:19:46 -07:00
Todd Gamblin
607f263fbc
Merge pull request #61 from alfredo-gimenez/develop
...
Mitos 0.9.1
2015-06-11 16:31:28 -07:00
Todd Gamblin
3cb10f92af
Merge pull request #62 from trws/tmuxinator
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Partial ruby extension and tmuxinator package
2015-06-11 16:31:15 -07:00
Todd Gamblin
9955df896b
Merge pull request #63 from trws/silver-searcher
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adding package for the silver searcher
2015-06-11 16:31:04 -07:00
Tom Scogland
a087fd71e4
Removing comment line
...
Missed that the auto-generated comment line stuck around.
2015-06-11 13:57:19 -07:00
Tom Scogland
d92ac2a6b2
Small ruby enhancement and tmuxinator package
...
It is currently less painful to pull the source from github, compile it into a
gem, then install the gem, than it is to download a gem and install it. This
still lacks an activation mechanism, but `spack use tmuxinator` is functional.
2015-06-11 13:51:53 -07:00
Alfredo Gimenez
afe3c5b6bb
Mitos 0.9.1
2015-06-11 11:02:51 -07:00
Tom Scogland
cd581d1d5a
adding package for the silver searcher
2015-06-10 14:24:38 -07:00
Tom Scogland
2d465ffd10
partial upgrade to vim package
2015-06-10 14:14:31 -07:00
Todd Gamblin
04bcf43649
Merge pull request #58 from trws/python-cffi
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Python cffi
2015-06-10 00:36:37 -07:00
Todd Gamblin
874326a1ad
Merge pull request #56 from trws/uuid-task-and-taskd
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package files for libuuid, needed for flux and taskwarrior packages
2015-06-10 00:35:30 -07:00
Tom Scogland
c8ad456fd6
nettle depends on gmp, without it the nettle build fails on gcc 4.9.2
2015-06-09 19:37:42 -07:00
Tom Scogland
8839eeb421
new package files for python-cffi and its dependency pycparser
2015-06-09 19:36:08 -07:00
Tom Scogland
eab3d4811e
package files for libuuid, needed for flux and taskwarrior packages, along with the taskwarrior packages
2015-06-09 19:26:49 -07:00
Todd Gamblin
e64c0f4e4e
Fix Boost finding in Dyninst 8.2.1.
2015-06-09 17:48:38 -07:00
Todd Gamblin
bde9c7eee3
Upate ATLAS and netlib-blas.
2015-06-07 15:41:15 -07:00
Todd Gamblin
0570660d81
Make blas a virtual dependency, default netlib-blas.
2015-06-06 18:23:12 -07:00
Todd Gamblin
26b9592780
Add disablement of cpu throttle check.
2015-06-06 18:19:05 -07:00
Todd Gamblin
8b9dcfe635
Delete lapack/atlas combined package.
2015-06-06 18:18:51 -07:00
Todd Gamblin
5d94864b6c
Rename netlib_blas -> netlib-blas
2015-06-06 18:18:44 -07:00
Todd Gamblin
50d7b3df2b
Merge branch 'psaravan-fastmath' into features/fastmath
...
Conflicts:
var/spack/packages/lapack/package.py
2015-06-06 18:17:59 -07:00
Todd Gamblin
8215c85619
Merge branch 'develop' into features/fastmath
2015-06-06 18:15:52 -07:00
Todd Gamblin
c43b5d670b
Remove dummy fastmath package.
2015-06-06 17:48:33 -07:00
Todd Gamblin
b6ad37557f
fix up Saravan's petsc install
2015-06-06 17:41:15 -07:00
Todd Gamblin
d266bf0184
Working Hypre, PARPACK.
2015-06-06 17:21:11 -07:00
Todd Gamblin
5294e2b9b9
CGM package working on cab.
2015-06-06 16:56:59 -07:00
Todd Gamblin
c5ab3f4e82
CBLAS package working and patching in spack compilers.
2015-06-06 16:29:37 -07:00
Todd Gamblin
f29fc5822b
Working boxlib package.
2015-06-06 16:16:19 -07:00
Todd Gamblin
b9746de52e
Working ARPACK package.
2015-06-06 15:26:54 -07:00
Todd Gamblin
03780ea105
Remove autosave files from saravan's PR
2015-06-06 15:26:54 -07:00
Todd Gamblin
422a75e4b8
Clean up arpack build, use the Spack f77 compiler.
2015-06-06 15:26:54 -07:00
Saravan Pantham
1f0246f970
Updated HDF5 to use MPI.
2015-06-06 15:26:43 -07:00
Saravan Pantham
9d71093500
Updated Zoltan.
2015-06-06 15:26:42 -07:00
Saravan Pantham
fd34f4b119
Added more FASTMath packages.
2015-06-06 15:26:38 -07:00
Saravan Pantham
c174fe6199
Fixed BLAS and Lapack installations
2015-06-06 15:26:31 -07:00
Saravan Pantham
d461aa3722
Added Lapack package
2015-06-06 13:06:18 -07:00
Saravan Pantham
a23e1579e3
Added BLAS package
2015-06-06 13:06:17 -07:00
Todd Gamblin
ab31f989db
Merge Alfredo's Mitos changes from github with Greg's Python changes.
2015-06-06 12:53:28 -07:00
Gregory L. Lee
96ec75f7fe
Merge branch 'develop' of ssh://cz-stash.llnl.gov:7999/scale/spack into develop
2015-06-04 15:49:57 -07:00
Gregory L. Lee
5ac5c021b8
new package versions
2015-06-04 15:49:55 -07:00
Alfredo Gimenez
dae33a31c0
Dyninst 8.2.1+ dependency for cmake
2015-06-03 22:02:47 -07:00
Alfredo Gimenez
15aee0de1a
Mitos updated with new release
2015-06-03 21:58:44 -07:00
Gregory L. Lee
c4f5a881e6
new Python extensions
2015-06-03 10:08:07 -07:00
Gregory L. Lee
6dffe2ddd1
updated url
2015-06-03 10:07:21 -07:00
Gregory L. Lee
74b0a9c059
updated Python extension versions
2015-06-01 08:39:01 -07:00
Gregory L. Lee
83af842a74
fixed cython activation conflict
2015-06-01 08:38:32 -07:00
Todd Gamblin
f813d823a1
Merge branch 'features/optional-deps' into develop
...
This includes:
- Much better variant support (+debug/-debug)
- Optional dependency support (depends_on(... , when='<condition>')
- New config file format (YAML in ~/.spack)
- New Spec format (YAML in $prefix/.spack/spec.yaml)
2015-05-18 16:16:20 -07:00
Matthew LeGendre
46b91ddf57
YAML config files for compilers and mirrors
2015-05-18 16:01:21 -07:00
Gregory L. Lee
50970b72d8
added py-pandas
2015-05-12 13:47:48 -07:00
Todd Gamblin
cd5fa128c5
Work on SPACK-41: Optional dependencies work for simple conditions.
...
- Can depend conditionally based on variant, compiler, arch, deps, etc
- normalize() is not iterative yet: no chaining depends_ons
- really need a SAT solver, but iterative will at least handle
simple cases.
- Added "strict" option to Spec.satisfies()
- strict checks that ALL of other's constraints are met (not just
the ones self shares)
- Consider splitting these out into two methods: could_satisfy() and
satisfies()
- didn't do this yet as it would require changing code that uses
satisfies()
- Changed semantics of __contains__ to use strict satisfaction (SPACK-56)
- Added tests for optional dependencies.
- The constrain() method on Specs, compilers, versions, etc. now
returns whether the spec changed as a result of the call.
2015-05-12 09:56:59 -07:00
Todd Gamblin
ef9deeccd1
Merge branch 'features/yaml-spec' into features/optional-deps
2015-05-10 19:28:47 -07:00
Todd Gamblin
43e5465592
Fix bug in directory layout hidden files()
2015-05-10 17:56:27 -07:00
Todd Gamblin
3b1898b8e4
Fix SPACK-40: Finish adding variant directive.
...
- Variants are now declarable in packages using the variant() directive.
- Variants are checked - you can't just ask for a random variant, it has to be declared.
- conditional logic (@when, if, '+debug' in spec, etc.) still required in package to
implement variant.
2015-05-10 12:24:03 -07:00
Cyrus Harrison
8c4fe6d249
added simple spack package files for uncrustify and cppcheck
2015-04-30 22:42:53 -07:00
Alfredo Gimenez
0f5b26c9cd
MemAxes and Mitos
2015-04-09 14:46:33 -07:00
Todd Gamblin
37a5c3b09f
Version bump for adept-utils
2015-04-01 00:05:26 -07:00
Matthew LeGendre
89731d4a7d
Add binutils as a gcc dependency so it doesn't use the system linker/assembler.
2015-03-30 14:23:02 -07:00
Matthew LeGendre
50687e08cb
Fix QT with gcc 4.9 build error where QT's -Wl,--no-undefined interfered with gcc's implicit libgcc_s.so library
2015-03-27 17:32:37 -07:00
Todd Gamblin
c10773503b
Merge branch 'benjaminwalters-develop' into features/blas
...
Conflicts:
var/spack/packages/lapack/package.py
2015-03-26 00:31:34 -07:00
Todd Gamblin
fa53bb835c
Merge branch 'kev40293-develop' into features/blas
2015-03-26 00:12:41 -07:00
Benjamin Walters
1b75b34eb6
Removed subprocess.call calls and replaced with spack symlink calls
2015-03-19 04:37:21 -05:00
Benjamin Walters
3d2df174d1
Added package files for Lapack (has virtual dependency blas) and Netlib blas (provides virtual dependency blas).
2015-03-19 03:20:24 -05:00
Todd Gamblin
32244ac733
MPICH provides environment vars to make MPI compilers behave like spack.
2015-03-13 13:32:24 -07:00
Todd Gamblin
b80e091f46
metis package.
2015-03-13 00:03:33 -07:00
Todd Gamblin
32e2f21e8d
Working scotch package.
2015-03-12 08:49:45 -07:00
Todd Gamblin
81d518438c
Point ravel download at the github release page.
2015-03-12 06:54:15 -07:00
Todd Gamblin
b24aca6da2
Add -Wno-dev to avoid cmake policy warnings.
2015-03-12 06:54:15 -07:00
Todd Gamblin
e624ebec07
Working ravel package.
2015-03-12 06:54:15 -07:00
Todd Gamblin
14a79a2ddf
Add OTF package.
2015-03-12 06:54:14 -07:00
Todd Gamblin
d6c14f40b2
SAMRAI builds on cab with new URL.
2015-03-11 19:14:43 -07:00
Todd Gamblin
f8044e0290
SAMRAI URL update.
2015-03-11 18:58:29 -07:00
Todd Gamblin
fbebb94cd6
Add cram package.
2015-03-05 11:05:42 -08:00
Todd Gamblin
30e45df8a5
Updates to atlas packages.
2015-03-04 09:34:42 -08:00
Kevin Brandstatter
8921d52a82
Working lapack install linking to installed ATLAS
2015-03-03 22:27:16 -06:00
Kevin Brandstatter
0de021d427
Added LAPACK package file that depends on and builds against ATLAS
2015-03-03 19:21:02 -06:00
Kevin Brandstatter
08f37d478f
Removed FIXME comments from atlas
2015-03-01 21:26:37 -06:00
Kevin Brandstatter
2f2eab0e15
Merge branch 'develop' of github.com:kev40293/spack into develop
2015-02-26 14:42:12 -06:00
Kevin Brandstatter
bbfc519ee5
Added packaging files for ATLAS with and without netlib's LAPACK
2015-02-26 14:41:46 -06:00
Todd Gamblin
ffdb90f39a
Last minute Qt bugfix.
2015-02-24 10:42:35 -08:00
Todd Gamblin
daef78f538
Update packaging documentataion.
2015-02-23 10:31:22 -08:00
Saravan Pantham
14e70ad689
Added netcdf package support.
2015-02-18 18:05:57 -08:00
Todd Gamblin
c7b8a4e25c
Fix for SPACK-46: cleanup spack clean, spack restage.
2015-02-18 14:00:37 -08:00
Todd Gamblin
db11373351
Resurrect combined qt4/5 package from b7dacb
2015-02-18 13:16:22 -08:00
