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Author SHA1 Message Date
Tom Payerle
0fb671a19e
Gnuplot fix 16928 (#16929) 
* gnuplot: Fix for #16928

Dependency for --with-wx flag mistyped (should be wxwidgets)

* Revert "gnuplot: Fix for #16928"

This reverts commit 2b85814e5ccf5c9b2c70c7959994e89c18fdc3d8.

* gnuplot: Fix for #16928

Dependency spec for --with-wx flag mistyped (should be wxwidgets, not
wx)
 2020-06-03 22:08:07 -05:00
shanedsnyder
748be57790
update darshan-runtime & darshan-util versions (#16934) 
* update darshan-runtime & darshan-util versions

includes up through the current release, 3.2.1

* remove pre-releases, not needed in spack
 2020-06-03 18:05:46 -07:00
eugeneswalker
0086c47546
patch lambda capture issue for @1.1906.1, fixed in upstream faodel@master (#16935) 2020-06-03 11:38:27 -07:00
Greg Becker
3347ef2de4
Feature: add option to create view by copying/relocating files (#16480) 
* add subcommand `spack view copy/relocate`

* update bash completions

* add copy/relocate commands to view tests

* allow copied views to be removed
 2020-06-03 09:45:13 -07:00
dmorone
600e2cfc4f
amber: updated dependency constraint on cuda (#16919) 
Fix message 'amber requires cuda version :10.1.243, but spec asked for 10.2.89'
 2020-06-03 13:17:36 +02:00
Amjad Kotobi
eed82a19be
openssh: added v8.3p1 and v8.1p1 (#16917) 2020-06-03 11:28:42 +02:00
Amjad Kotobi
417eb3c5b1
git: added v2.27.0 (#16918) 2020-06-03 11:24:08 +02:00
Justin S
5604c8d91a
mummer4: new package at 4.0.0-beta2 (#16907) 2020-06-02 22:09:39 -05:00
Robert Blake
0e71e8716a
Add new package: sbml (#16898) 
* Adding a module for sbml.

* Adding support for all the languages.

* Update var/spack/repos/builtin/packages/sbml/package.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

* Update var/spack/repos/builtin/packages/sbml/package.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

Co-authored-by: Robert Blake <rob.c.blake.3@gmail.com>
Co-authored-by: Greg Becker <becker33@llnl.gov>
 2020-06-02 17:54:50 -07:00
Adam J. Stewart
7f086af05e
Ruby: add warning about Avira antivirus (#16882) 2020-06-02 15:05:50 -07:00
Toyohisa Kameyama
76142124d2
alsa-lib: Add new version and python dependency. (#16905) 
Add version 1.2.2.
Add conditional python dependency.
Add patch for 1.1.4.1 and python.
 2020-06-02 14:23:14 -07:00
Justin S
5d37439a7b
gmap-gsnap: add 2020-06-01 (#16906) 2020-06-02 14:21:00 -07:00
Chuck Atkins
5ace804dc2
Bump ADIOS to 2.6.0 (#16908) 2020-06-02 14:15:23 -07:00
iarspider
9a17d48455
Add ipython 7.5.0 (#16801) 
* Add ipython 7.5.0

* Update dependencies

* Update package.py
 2020-06-02 15:09:35 -05:00
takanori-ihara
b60ab6eefd
ruby: fixed build with Fujitsu compilers (#16889) 2020-06-02 11:07:48 +02:00
Xavier Delaruelle
c7851f896c
environment-modules: added v4.5.1 (#16896) 2020-06-02 11:06:02 +02:00
Greg Becker
2795414a80
Fix satisfaction checks for excluding variants from matrices (#16893) 
Because of the way abstract variants are implemented, the following 
spec matrix does not work as intended:
```
matrix:
- [foo]
- [bar=a, bar=b]
exclude:
- bar=a
```
because abstract variants always satisfy any variant of the same
name, regardless of values.

This PR converts abstract variants to whatever their appropriate 
type is before running satisfaction checks for the excludes clause 
in a matrix.

fixes #16841
 2020-06-02 11:02:28 +02:00
takanori-ihara
0875c6a5d0
py-grpcio: fixed build with Fujitsu compilers (#16900) 2020-06-02 10:55:55 +02:00
Axel Huebl
6aa0e9944e
ccache: added v3.7.9 (#16902) 
Add the latest CCache release. Fixes issues with `-x cu` that are
not present in the last checksummed release. This fixes workflows
with CMake.
 2020-06-02 10:53:12 +02:00
Sinan
7f2db5c5b0
qt: add conflict for old gcc (#16904) 
Co-authored-by: Sinan81 <Sinan81@github>
 2020-06-02 10:51:35 +02:00
Michael Kuhn
6035b32748
go: added v1.14.4 and v1.13.12 (#16903) 2020-06-02 10:48:35 +02:00
Jonathon Anderson
feda2a3073
openmpi: add opa-psm2 dependency (#16873) 
Also document with_or_without and enable_or_disable, (which are used
to configure the opa-psm2 dependency).
 2020-06-01 15:33:24 -07:00
Amjad Kotobi
ab6905d5fa
r-exactextractr: package type fixed (#16881) 
* r-exactextractr: should inherit from RPackage
* r-exactextractr: fixed URL
 2020-06-01 14:01:41 -07:00
t-karatsu
9741de504f netcdf-cxx4: Add 'doxygen' dependency. 2020-06-01 13:56:07 -07:00
Jianwen WEI
4387975556 miniforge3: add version 4.8.3-4. 2020-06-01 13:54:53 -07:00
mic84
fe74c22184
amrex: add version 20.06 (#16895) 2020-06-01 13:53:49 -07:00
Christoph Junghans
daea1fcef6
exampm: fix build (#16894) 
* cabana: add mpi variant

* cajita: initial import

* exampm: update deps

* flake8
 2020-06-01 13:58:09 -06:00
健美猞猁
de63e1c2ac
healpix-cxx: added new package at v3.50.0 (#16846) 2020-06-01 06:13:35 +02:00
Greg Becker
b1bd777403
petsc: fix conditional activation of parmetis (#16533) 2020-05-31 14:13:10 -05:00
Hector Martinez-Seara
23a5f3f200
Updated unison to v2.51.2 (#16772) 
The current package does not work. Also several ocaml versions do
not compile such as 4.09.0. Updated to the new ocaml version to
4.10.0, which is now a prerequisite.
 2020-05-31 13:58:37 -05:00
iarspider
6282e337f3
Add new version of py-astroid (#16805) 
* Add new version of py-astroid

* Add new version of py-lazy-object-proxy

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-05-31 13:54:33 -05:00
健美猞猁
3896a401db
Install libsharp header files to include/libsharp. (#16847) 
* Install libsharp header files to include/libsharp.

* Fix flake8 issues.

* Simplify specification of install path.
 2020-05-30 23:09:27 -05:00
Jordan Ogas
66b8b5ab37
add charliecloud 0.16 (#16810) 
* add charliecloud/0.16

* tidy comments
 2020-05-30 22:10:50 -05:00
darmac
2fdb6b5e44
Add new package: canal (#16790) 2020-05-30 21:45:59 -05:00
takanori-ihara
e2fa74c533
Add new package:linsys-v (#16823) 2020-05-30 21:20:08 -05:00
Satish Balay
1ec8d928fa
petsc@3.13: update superlu-dist dependency - as superlu-dist@6.3.1 has API change (#16849) 2020-05-30 21:10:34 -05:00
Erik Schnetter
b00080d2da
ssht: Install include files into "include/ssht" (#16879) 2020-05-30 21:08:18 -05:00
Adam J. Stewart
9eebc6b4c1
horovod: added v0.19.4 (#16878) 2020-05-30 20:22:00 +02:00
Adam J. Stewart
d76eb1fa51
Pandas: add 1.0.4 (#16877) 2020-05-30 11:09:10 -05:00
noguchi-k
816f780be8
revocap-refiner: add space and remove unused function. (#16861) 2020-05-30 10:57:12 -05:00
darmac
7a363e2a3f
Add new package: netkit-ftp (#16876) 
* Add new package: netkit-ftp

* remove parallel constraint
 2020-05-30 10:47:47 -05:00
Jen Herting
3a66d0773c
perl-bioperl: fixed version 1.007002 (#16826) 
* [perl-bioperl] fixed url for version 1.007002
* [perl-bioperl] fixed conditional method directives
 2020-05-30 00:17:01 -07:00
Amjad Kotobi
857d2c9150 r-lfe: New package 2020-05-30 00:15:50 -07:00
Michael Kuhn
3cc0e1a333
cpio: add patch to fix build with gcc@10: (#16844) 2020-05-30 00:14:57 -07:00
Amjad Kotobi
58cc75ac29
git-lfs: add versions 2.10.0, 2.11.0 (#16850) 2020-05-30 00:14:24 -07:00
Ben Morgan
c35ced1465
geant4: New version 10.6.2 (#16868) 
Update both main and data packages. Data versions have not changed
in new version.

Provide new python variant to build Python bindings for 10.6.2 and
newer. Add dependencies on python and Boost+python required by variant.
 2020-05-30 00:13:24 -07:00
Nicholas Sly
ec5959694c
Add netcdf-c~parallel-netcdf variant specification to netcdf-fortran~mpi. (#16671) 
Co-authored-by: sly <sly@lanl.gov>
 2020-05-29 09:48:03 -07:00
Christoph Junghans
11fc6c5791
examinimd/miniaero: fix build with kokkos-legacy (#16867) 
* examinimd/miniaero: fix build with kokkos-legacy

* flake8
 2020-05-29 10:17:55 -06:00
0t1s1
2aca0cf565
gridlab-d: added new package. (#16816) 2020-05-29 09:37:12 +02:00
Christoph Junghans
623cc7427e
legion: add v20.03.0 (#16848) 2020-05-28 14:58:55 -06:00
Marc Allen
712fc696ba
npm: use mkdirp instead of mkdir (#16835) 
fixes #16833

Co-authored-by: Marc Allen <mrcall@amazon.com>
 2020-05-28 12:33:09 +02:00
Luca Heltai
a6779061d7
dealii: deal with nanoflann after 9.2.0 (#16839) 2020-05-28 12:02:34 +02:00
Adam J. Stewart
4351c2eb32
Update checksum for PyTorch patch (#16837) 2020-05-28 11:27:59 +02:00
Toyohisa Kameyama
ab65a8ee27
opencv: fix to build version 3.2.0 with Fujitsu compiler (#16840) 2020-05-28 11:23:15 +02:00
Joseph Ciurej
87cd375559
ffmpeg: add a maintainer to the package (#16830) 2020-05-27 22:51:19 +02:00
Toyohisa Kameyama
4d5a68731a
ffmpeg: set compilers command. (#16799) 2020-05-27 21:04:37 +02:00
Tom Payerle
6ddc077e08
libxv: videoproto is a build and link dependency (#16821) 
fixes #16820

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2020-05-27 16:34:15 +02:00
Jen Herting
d8c7073a9f
py-configargparse: new package at v1.2.3 (#16814) 2020-05-27 09:45:14 +02:00
Jen Herting
768419601d
py-fits-tools: added package at v1.1.2 (#16815) 2020-05-27 09:43:26 +02:00
Tomoki, Karatsu
6b8775f6af py-torch: find openmp when %fj (#16822) 
Fix for 'FindOpenMP.cmake' to detect openmp 
settings used by Fujitsu compiler.
 2020-05-27 09:32:11 +02:00
Justin S
fcacf8dc9d
plink-ng: new package at v200511 (#16750) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2020-05-27 09:20:27 +02:00
Christoph Junghans
ac7f6b98b5
quicksilver: initial commit (#16811) 2020-05-27 09:06:25 +02:00
Mark Olesen
0b96082e74 openfoam: improve handling of wmake rules, version update 
- add future-proofing for wmake rules locations:
  Accept wmake/rules/{ARCH}{COMP} or wmake/rules/{ARCH}/{COMP}

- compiler option is now '-spack' instead of 'RpathOpt'
  which now seems to be a bit harsh on the eyes.
  Now have compilations such as 'linux64GccDPInt32-spack',
  which is moderately easier to read.

- add OpenFOAM 1912, patch 200506

STYLE: adjust for new flakey8 indentation rules
 2020-05-26 10:55:56 -07:00
Dr. Christian Tacke
2c6406c003
grpc: allow building shared libraries (#16356) 2020-05-26 16:30:18 +02:00
darmac
d7fb8701c2
su2: new package at v7.0.3 (#16787) 2020-05-26 11:17:25 +02:00
darmac
7383d923f0
blogbench: added new package at v1.1 (#16793) 2020-05-26 11:16:43 +02:00
iarspider
45b86e2c1d
py-hypothesis: added v5.3.0 (#16804) 2020-05-26 09:42:54 +02:00
Sergey Kosukhin
ff44a6d03f
hdf: new version, variants and refactoring (#16469) 
* hdf: new version, variants and refactoring.

* libc provides rpc

* Fix szip-related configure argument.

* Update dependent packages.
 2020-05-25 19:20:04 -05:00
Sergey Kosukhin
15d2883abe
openmpi: get rid of implicit system dependencies (#16758) 
* openmpi: get rid of implicit system dependencies

* Python 2 compatibility.

* Rename pbspro to openpbs and revert packages.yaml.

* Remove virtual package 'sendmail'.
 2020-05-25 19:14:47 -05:00
iarspider
3c36a7caab
py-moreitertools: added v7.0.0 (#16802) 2020-05-25 22:18:40 +02:00
Amjad Kotobi
e90f51a802
r-spatialeco: New package (#16744) 2020-05-25 13:19:51 -05:00
Tom Payerle
17e4a72191
netcdf-cxx4: remove erroneous variants (#16762) 
fixes #16725

The dap, jna, pnetcdf, netcdf4, and ncgen4 variants added in #16047
are _not_ supported by the configure script for netcdf-cxx4 package 
(These appear to be configure args for netcdf-c package).
 2020-05-25 15:15:30 +02:00
Stephen Hudson
a3dc9cf848
libensemble: added v0.7.0 (#16773) 2020-05-25 14:35:44 +02:00
Michael Kuhn
30fb364452
py-gdbgui: added v0.13.2.0 (#16781) 2020-05-25 14:34:26 +02:00
Michael Kuhn
5a335e4985
py-pygdbmi: added v0.9.0.3 (#16778) 2020-05-25 14:33:41 +02:00
Mark W. Krentel
f370bc0fa2
libmonitor: added v2019.05.31 (#16774) 2020-05-25 14:31:16 +02:00
Michael Kuhn
9f2fc52165
py-pygments: added v2.6.1 (#16776) 2020-05-25 14:23:41 +02:00
Michael Kuhn
d0e4414bb6
libunwind: fix build with gcc@10: (#16782) 2020-05-25 14:22:51 +02:00
Michael Kuhn
232cdb85a5
python: added v3.8.3 (#16775) 2020-05-25 13:59:47 +02:00
Michael Kuhn
0c735b8f1a
meson: added v0.54.2 (#16777) 2020-05-25 13:52:13 +02:00
Michael Kuhn
8395db361c
py-flask: added v1.1.2 and v0.12.4 (#16779) 2020-05-25 13:51:08 +02:00
Amjad Kotobi
5df64769e3
r-matlab: new package at v1.0.2 (#16785) 2020-05-25 13:48:24 +02:00
darmac
6f85dc66a7
testdfsio: added new package at v0.0.1 (#16789) 2020-05-25 13:46:42 +02:00
darmac
99d9967b8b
sqoop: added new package at v1.99.7 (#16786) 2020-05-25 13:41:08 +02:00
Michael Kuhn
995714cba5
glib: added v2.64.3 (#16800) 2020-05-25 13:32:42 +02:00
darmac
04f60afc08
ffsb: added new package at v5.2.1 (#16791) 2020-05-25 13:16:55 +02:00
Tomoki, Karatsu
821c729ec0
netlib-scalapack: specify MPI's location for Fujitsu-MPI. (#16798) 
Fujitsu-MPI wrapper commands aren't recognized from 'FindMPI' 
function of 'cmake'. If we are using the Fujitsu compiler and Fujitsu MPI, 
specify the MPI path information explicitly.
 2020-05-25 13:12:13 +02:00
David Pape
6d913ddab7
likwid: fixed failing build on powerpc (#16797) 
Fixes #16783
 2020-05-25 13:10:12 +02:00
Kevin Huck
bc145b2b3f
TAU: remove ~nls constraint on binutils dependency 
TAU does not require ~nls.
 2020-05-22 19:40:28 -07:00
Stephen Herbein
5108fe314b flux-sched: add dependency type for flux-core 2020-05-22 19:37:47 -07:00
Stephen Herbein
a74ee4d27a flux: add dependency types for python dependency 
Flux requires `build` for python and many of the python packages because
it builds python bindings.  Beyond the bindings, the Flux front-end
commands now use python too, hence the `run` type. Finally, Flux's
`pymod` module is linked against the python interpreter, so the package
requires a `link` dependency on python too.
 2020-05-22 19:37:47 -07:00
Stephen Herbein
9e3470d797 flux: add latest releases and checksum 
The next release 0.17.0 will also require python3.6+, pre-emptively
prepare for that release.  Also support current master branch.
 2020-05-22 19:37:47 -07:00
Amjad Kotobi
eee6942c8b r-nimble: New package 2020-05-22 19:30:41 -07:00
Amjad Kotobi
9bcf4480b5 r-rferns: New package 2020-05-22 19:20:52 -07:00
Luca Heltai
55eb192234
dealii: 9.2.0 release (#16743) 2020-05-22 19:19:19 -07:00
Amjad Kotobi
3a336b328a
r-reticulate: add version; dependencies (#16747) 
* Add version 1.15
* Add link dependency on r-rcpp
* Add dependency on r-rappdirs
 2020-05-22 19:17:11 -07:00
Sergey Kosukhin
e18c5316bd cdo: fix url for version 1.9.8 2020-05-22 19:12:10 -07:00
Miroslav Stoyanov
86dd42ec70
tasmanian: add version 7.1 (#16769) 2020-05-22 19:10:21 -07:00
Michael Kuhn
be570aa655 zstd: Add 1.4.5 2020-05-22 19:07:29 -07:00
Adam J. Stewart
f17352f6f7
py-horovod: add 0.19.3 (#16768) 2020-05-22 19:20:25 -05:00