Commit graph

11877 commits

Author SHA1 Message Date
Justin S
7f6266eef6 r-intervals: new package at 0.15.1 (#11884) 2019-06-28 19:42:55 -04:00
Mark W. Krentel
8aa8b50f91 docs: add example for an external module in packages.yaml
Add an example of a 'modules:' entry for an external package in
packages.yaml.  The 'External Packages' section of 'Build
Customization' mentions 'paths:' and 'modules:' and gives an
example of paths, but not modules.
2019-06-28 11:59:10 -07:00
Carson Woods
5873beb83f qthreads package: make hwloc dependency optional and add version 1.14 (#11780) 2019-06-28 11:43:06 -07:00
Andreas Baumbach
5e9437866b New package: libtomlc99 (#11811) 2019-06-28 11:16:34 -07:00
Hironori-Yamaji
d5402147f0 bib2xhtml: replace version and change the download url (#11837)
The old version was no longer available for download
2019-06-28 11:03:54 -07:00
Matthieu Dorier
46c1513296 PMDK package: requires ncurses dependency (#11868) 2019-06-28 10:15:06 -07:00
Toyohisa Kameyama
d8f4e0a565 OTF package: use autotools. (#11873) 2019-06-28 10:13:21 -07:00
Toyohisa Kameyama
ae8710fa36 blast-plus package: remove --with-64 on ARM. (#11877)
This configure option is not supported on ARM
2019-06-28 10:11:04 -07:00
Michael Kuhn
ac76e4692f likwid package: Fix build with version 4.3.4 (#11878) 2019-06-28 10:05:38 -07:00
ktsai7
d48226b260 Update package.py (#11872) 2019-06-28 09:39:59 -06:00
Michael Kuhn
d2de78ab00 fenics, llvm: Fix package names being overriden (#11879)
Setting name within the package class allows overriding the package
name, which both packages do using several for loops.

Fixes #11789
2019-06-28 15:59:19 +02:00
Christoph Junghans
d6ecc29e4b
portage: add v1.2.2 (#11842)
* portage: add v1.2.2

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* flake8
2019-06-28 06:39:26 -06:00
Toyohisa Kameyama
ff877a567e Gotcha package: fixed to build on ARM. (#11840)
Apply patch to current version which has not yet been merged in the
upstream package repo.
2019-06-27 15:34:11 -07:00
Derick Huth
81db89b5e7 New packages: Chill and IEGenLib (#11406)
* Add Chill package
* Add IEGenLib package, a dependency of Chill
2019-06-27 13:41:06 -07:00
Michael Kuhn
f5f2b05c5b pkgconf: Add 1.6.1 (#11863) 2019-06-27 22:15:04 +02:00
Christoph Junghans
8a51215c36
bml: add v1.3.1 (#11856) 2019-06-27 10:57:09 -06:00
Hironori-Yamaji
c48b67ccd7 f90cache: change the download url (#11838)
* f90cache: change the download url

* f90cache: added the download url for ver 0.99
2019-06-27 12:55:48 -04:00
Hironori-Yamaji
9ed4db6eea tcsh: change the download url, add version 6.21.00 (#11836)
* tcsh: change the download url, add version 6.21.00

* tcsh: change the download url

* tcsh: Fix checksum for 6.20.00
2019-06-27 12:53:43 -04:00
Mark Olesen
0119812781 Update openfoam (#11866)
* OpenFOAM: rationalize architecture options

- older versions of OpenFOAM had WM_ARCH_OPTION to choose a 32-bit
  build on 64-bit architectures. This is not exactly relevant anymore
  and has now been largely removed from OpenFOAM.

- simultaneously the newest version of OpenFOAM has rationalized the
  handling of special settings for KNL by rolling these into the
  compiler options. We now do the same thing here in spack.

  1. Reuse the internal variable arch_option to convey processor-specific
     optimizations and add these into the C++OPT=... statement.
  2. Drop spack support for configuring a 32-bit build on 64-bit
     hardware.

These changes can also be applied to older OpenFOAM versions, and to
various OpenFOAM forks without issue.

* update openfoam versions. New release 1906, patched 1812 version.
2019-06-27 11:14:33 -05:00
Michael Kuhn
eb00436ec8 font-util: Add missing mkfontdir build dependency (#11865)
Some of the fonts now included in font-util need mkfontdir to build.
2019-06-27 15:53:05 +02:00
Michael Kuhn
5669144d22 Fix pkgconfig dependencies (#11864)
pkgconfig is the correct virtual dependency.
2019-06-27 14:56:42 +02:00
Toyohisa Kameyama
1c779608b2 cbtf-krell: fixed to build on ARM. (#11859) 2019-06-27 11:55:15 +02:00
Toyohisa Kameyama
977b2621f9 font-util: fix fontname. (#11860) 2019-06-27 11:54:23 +02:00
Satish Balay
85372ae102 petsc: add version 3.11.3 (#11857) 2019-06-27 07:02:03 +02:00
Michael Kuhn
75adb54d51 cdo: Remove obsolete patch (#11854)
Commit ea3e1521fe removed version
1.9.7rc2, making the patch for gcc@9 obsolete.
2019-06-26 19:36:41 -05:00
Michael Kuhn
0ef3b4c578 ncl: Fix build (#11855)
ncl does not build with newer versions of gdal (or rather proj). This
also needs a small change to gdal, otherwise we end up with both proj@5
and proj@6 in the spec.
2019-06-26 19:36:29 -05:00
Greg Becker
a0f2d6a8b9 Make yaml-cpp build with libc++ (#10504)
- Separate `yaml-cpp` tests into variant
- Make conflict between `yaml-cpp` tests and `libc++` explicit
2019-06-26 14:29:09 -07:00
ktsai7
ba5530bb42 added min version for gasnet and legion (#11853)
* added min version for gasnet and legion

* Update package.py

* Update package.py

* Update package.py
2019-06-26 14:46:18 -06:00
Douglas Duckworth
27b07811dd RELION package: add version 3.0.6 (#11851) 2019-06-26 09:57:14 -07:00
Toyohisa Kameyama
e49c101f05 X11fonts: use autotools for new architecture host (#11785)
* Remove individual font-* packages and add them as resources of the
  font-util package
* Update font-util package to Autotools-based package, and call
  autoreconf to regenerate the old configure script
* Add font-adobe-utopia-type1
2019-06-26 08:26:37 -07:00
Toyohisa Kameyama
b185f87c55 Add --frontend and --backend option to spack arch command (#11746) 2019-06-26 08:19:46 -07:00
Adam J. Stewart
5c5d6cad44 Rename py-pytables -> py-tables (#11847) 2019-06-25 21:32:49 -04:00
Satish Balay
ef48219f15 remove binary file that got added inadvertently via #11828 (#11848) 2019-06-25 21:31:36 -04:00
Christoph Junghans
718af821d1 pfunit: fixed a typo (#11843) 2019-06-25 14:06:52 -04:00
Chuck Atkins
f20c97168d
gnutls: workaround guile build error on macos (#11751) 2019-06-25 13:08:28 -04:00
jthies
6bbc7e8d9b phist can't be compiled with gcc older than 4.9.2 (#11677)
* phist can't be compiled with gcc older than 4.9.2
2019-06-25 12:53:21 -04:00
Ben Morgan
531114cd6c
fmt: Add version 5.3.0 with cxxstd variant support (#11799)
* fmt: Add cxxstd variant, plus cmake/c++ patches

Spack supported versions of fmt default to C++11 for versions
less than 5, C++14 greater than 5, with fmt implementing
fallbacks to whatever compiler supports.

To give better ABI compatibility and use of newer standards, provide
a `cxxstd` variant defaulting to 11 with 98-17 options. Use cmake_args
to set CMAKE_CXX_STANDARD as appropriate, plus use of `FMT_USE_CPP11`
option for C++98 builds. Use `conflicts` to disable use of certain
standards in versions that don't support, or fail the build, with
those standards.

Add patches to unify use of `CMAKE_CXX_STANDARD` in 3.0 versions,
remove hard-coding of compiler flags in `fmt-config.cmake`, and
prevent use of C++11 features in 4.1.0 when in supported C++98
mode.

Default to not building documents as no dependency on Doxygen is
yet present, and they are not part of the "all" build.

* Use CMake to enforce C++ standard support

Fail configure step if fmt tries to build with a cxxstd variant
not supported by the compiler (or known to CMake).

* fmt: New version 5.3.0
2019-06-25 12:01:31 +01:00
Patrick Gartung
30ce818fc4
Fix for #10063 : install from source if buildcache with different DAG exist (#11834)
* Fix for #10063 : install from source if buildcache with different DAG exist

* Flake8
2019-06-24 21:09:24 -05:00
rvinaybharadwaj
fa563f0f55 Bumping-up miniVite to version 1.1 (#11828)
* Bumping-up miniVite to version 1.1

* Keeping both version of miniVite

* Changed to >=
2019-06-24 19:41:01 -06:00
Justin S
5b3f196bc2 New package: Rodinia (starting at 3.1) (#11650) 2019-06-24 18:32:46 -07:00
Carson Woods
ad14432e66 UCX package: add versions 1.5.1/1.5.2 (#11832) 2019-06-24 18:21:06 -07:00
Carson Woods
f10b806bde Singularity package: add version 3.2.1 (#11833) 2019-06-24 18:20:23 -07:00
Denis Davydov
8e89a82076 clamav: add new package (#11818)
* clamav: add new package

* fix flake8

* remove --dsable lines
2019-06-24 19:47:15 -04:00
Gregory Lee
16ff38b784 add glx variant to libepoxy (#11814) 2019-06-24 17:57:17 -04:00
Glenn Johnson
c575cc46db The py-pytables package depends on hdf5-blosc (#11823)
* The py-pytables package depends on hdf5-blosc

* Further modifications to py-pytables package

The 3.2.2 version of py-pytables should still build with internal blosc.
The issue with locking in a multithreaded environment has been
fixed/worked around in version 3.3.

Also, add bzip2 and lzo variants.
2019-06-24 17:56:51 -04:00
Satish Balay
1ec3d78441 hypre: superlu-dist-link-2.15.0.patch is now in hypre@develop (#11829) 2019-06-24 17:55:04 -04:00
Andreas Baumbach
b39a992528 add new package py-absl-py (#11812)
* add new package py-absl-py

Change-Id: I248d30e0a3e5e05d9ea4027d97a85545c63d1125

* Update package.py

* Update package.py

* Update package.py

* Update package.py
2019-06-23 17:33:36 -04:00
Andreas Baumbach
2687af2c53 New package py-astor (and test dependency py-astunparse) (#11813)
* add package py-astor

Change-Id: I2f6becfb5e9771170bf2df5eb629920e1c0998d7

* add new package py-astunparse

Change-Id: Id2d3e8dec28e720ed1cb121dad0d1a405c27ca29

* Update package.py

* Update package.py

* Update package.py
2019-06-23 17:33:22 -04:00
Christoph Junghans
d65e6ad7e3 hypre: add v2.16.0 (#11821)
* hypre: add v2.16.0

* update checksums

* hypre: xsdk-0.2.0 tag is missing on the new repo
2019-06-23 17:33:05 -04:00
Neil Flood
681245c7ed awscli: new package (#11796)
* awscli: new package

* More precise py-pyyaml version dep, as per setup.py
2019-06-23 14:54:48 -04:00