Commit graph

32601 commits

Author SHA1 Message Date
Wouter Deconinck
9f1a30d3b5
veccore: new variant vc (#39542)
* veccore: new variants umesimd and vc

* veccore: remove variant umesimd again
2023-08-22 11:20:19 -04:00
Harmen Stoppels
1340995249
clingo-bootstrap: pgo, lto, allocator optimizations (#34926)
Add support for PGO and LTO for gcc, clang and apple-clang, and add a
patch to allow mimalloc as an allocator in operator new/delete, give
reduces clingo runtime by about 30%.
2023-08-22 14:44:07 +02:00
dependabot[bot]
afebc11742
Bump sphinx from 6.2.1 to 7.2.2 in /lib/spack/docs (#39502)
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 6.2.1 to 7.2.2.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v6.2.1...v7.2.2)

---
updated-dependencies:
- dependency-name: sphinx
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-22 12:02:58 +02:00
Jim Edwards
34e9fc612c
parallelio: add v2.6.1 (#39479) 2023-08-22 09:44:06 +02:00
dependabot[bot]
1d8ff7f742
Bump sphinx-rtd-theme from 1.2.2 to 1.3.0 in /lib/spack/docs (#39562)
Bumps [sphinx-rtd-theme](https://github.com/readthedocs/sphinx_rtd_theme) from 1.2.2 to 1.3.0.
- [Changelog](https://github.com/readthedocs/sphinx_rtd_theme/blob/master/docs/changelog.rst)
- [Commits](https://github.com/readthedocs/sphinx_rtd_theme/compare/1.2.2...1.3.0)

---
updated-dependencies:
- dependency-name: sphinx-rtd-theme
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-22 09:32:39 +02:00
Axel Huebl
0e27f05611
openPMD-api: 0.15.2 (#39528)
Latest patch release.
2023-08-21 18:31:53 -07:00
Axel Huebl
19aaa97ff2
C-Blosc2: v2.10.2 (#39537)
This fixes regressions with external dependencies introduced
in 2.10.1
2023-08-21 18:29:58 -07:00
Kamil Iskra
990309355f
[bats] Update to v1.10.0 (#39561)
* [bats] Update to v1.10.0
  Original bats has been abandoned for years; nowadays it's
  community-maintained.
* [bats] Fix style
2023-08-21 18:25:35 -07:00
eugeneswalker
2cb66e6e44
tasmanian@:7.9 +cuda conflicts with cuda@12 (#39541) 2023-08-21 13:08:12 -07:00
David Gardner
cfaade098a
add sundials v6.6.0 (#39526) 2023-08-21 10:48:58 -07:00
Wouter Deconinck
ed65532e27
singularityce: fix after no spaces in Executable allowed (#39553) 2023-08-21 13:43:11 -04:00
Dr Marco Claudio De La Pierre
696d4a1b85
amdblis recipe: adding variant for a performance flag (#39549)
* amdblis recipe: adding variant for a performance flag

Signed-off-by: Dr Marco De La Pierre <marco.delapierre@gmail.com>

* typo fix

Signed-off-by: Dr Marco De La Pierre <marco.delapierre@gmail.com>

* style fix

Signed-off-by: Dr Marco De La Pierre <marco.delapierre@gmail.com>

* another typo fix

Signed-off-by: Dr Marco De La Pierre <marco.delapierre@gmail.com>

* one more style fix

Signed-off-by: Dr Marco De La Pierre <marco.delapierre@gmail.com>

---------

Signed-off-by: Dr Marco De La Pierre <marco.delapierre@gmail.com>
2023-08-21 10:16:39 -07:00
Taillefumier Mathieu
8def75b414
Update cp2k recipe (#39128)
Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>
Co-authored-by: Rocco Meli <r.meli@bluemail.ch>
2023-08-21 17:09:28 +02:00
Harmen Stoppels
5389db821d
aws-sdk-cpp: new versions and greatly reduce install size(#39511) 2023-08-21 14:52:21 +02:00
Wouter Deconinck
0d5ae3a809
cepgen: new version 1.1.0 (#39550) 2023-08-21 08:08:05 +02:00
Wouter Deconinck
b61ad8d2a8
whizard: new versions 3.1.1 and 3.1.2 (#39540) 2023-08-21 08:07:36 +02:00
Wouter Deconinck
b35db020eb
zlib: new version 1.3 (#39539) 2023-08-21 08:06:41 +02:00
Wouter Deconinck
ca1d15101e
zlib: add git url (#39533) 2023-08-21 08:04:28 +02:00
Brian Spilner
c9ec5fb9ac
cdo: add v2.2.2 (#39506)
* update cdo-2.2.2

* add note on hdf5
2023-08-18 15:46:50 -07:00
Todd Gamblin
71abb8c7f0
less: update version, dependencies (#39521) 2023-08-18 15:43:54 -07:00
John W. Parent
4dafae8d17
spack.bat: Fixup CL arg parsing (#39359)
Previous changes to this file stopped directly processing CL args to
stop batch `for` from interpolating batch reserved characters needed in
arguments like URLS. In doing so, we relied on `for` for an easy
"split" operation, however this incorrectly splits paths with spaces in
certain cases. Processing everything ourselves with manual looping via
`goto` statements allows for full control over CL parsing and handling
of both paths with spaces and reserved characters.
2023-08-18 14:29:47 -07:00
Jen Herting
b2b00df5cc
[py-gradio-client] New package (#39496) 2023-08-18 12:03:37 -05:00
Jen Herting
114e5d4767
[py-openmim] Beginning work (#39494) 2023-08-18 12:00:48 -05:00
Jen Herting
fd70e7fb31
[py-confection] new package (#39491) 2023-08-18 11:59:47 -05:00
George Young
77760c8ea4
py-multiqc: add 1.15, correct py-matplotlib dependency (#39509)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-08-18 11:56:20 -05:00
Jen Herting
737a6dcc73
py-markdown-it-py: add linkify variant and v2.2.0 (#39492)
* [py-markdown-it-py] added linkify variant

* [py-markdown-it-py] added version 2.2.0
2023-08-18 11:14:15 -05:00
Seth R. Johnson
3826fe3765
fortrilinos: release 2.3.0 compatible with trilinos@14 (#39500)
* fortrilinos: release 2.3.0 compatible with trilinos@14.0
2023-08-18 12:10:00 -04:00
Benjamin Meyers
edb11941b2
New: py-alpaca-farm, py-alpaca-eval, py-tiktoken; Updated: py-accerlate, py-transformers (#39432) 2023-08-18 10:29:12 -05:00
Axel Huebl
1bd58a8026
WarpX 23.08 (#39407)
* WarpX 23.08

Update WarpX and related Python packages to the lastest releases.

* fix style

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-08-18 10:03:47 -05:00
Jordan Galby
f8e0c8caed
Fix Spack freeze on install child process unexpected exit (#39015)
* Fix spack frozen on child process defunct

* Rename parent/child pipe to read/write to emphasize non-duplex mode
2023-08-18 09:41:02 +02:00
Vijay M
d0412c1578
Updating the versions of available tarballs and adding an eigen3 variant as well (#39498) 2023-08-17 22:23:32 -04:00
Harmen Stoppels
ec500adb50
zlib-api: use zlib-ng +compat by default (#39358)
In the HPC package manager, we want the fastest `zlib`  implementation by default.  `zlib-ng` is up to 4x faster than stock `zlib`, and it can do things like take advantage of AVX-512 instructions.  This PR makes `zlib-ng` the default `zlib-api` provider (`zlib-api` was introduced earlier, in #37372).

As far as I can see, the only issues you can encounter are:

1. Build issues with packages that heavily rely on `zlib` internals. In Gitlab CI only one out of hundreds of packages had that issue (it extended zlib with deflate stuff, and used its own copy of zlib sources).
2. Packages that like to detect `zlib-ng` separately and rely on `zlib-ng` internals. The only issue I've found with this among the hundreds of packages built in CI is `perl` trying to report more specific zlib-ng version details, and relied on some internals that got refactored. But yeah... that warrants a patch / conflict and is nothing special.

At runtime, you cannot really have any issues, given that zlib and zlib-ng export the exact same symbols (and zlib-ng tests this in their CI).

You can't really have issues with externals when using zlib-ng either. The only type of issue is when system zlib is rather new, and not marked as external; if another external uses new symbols, and Spack builds an older zlib/zlib-ng, then the external might not find the new symbols. But this is a configuration issue, and it's not an issue caused by zlib-ng, as the same would happen with older Spack zlib.

* zlib-api: use zlib-ng +compat by default
* make a trivial change to zlib-ng to trigger a rebuild
* add `haampie` as maintainer
2023-08-17 14:03:14 -07:00
Harmen Stoppels
30f5c74614
py-flake8: bump including deps (#39426) 2023-08-17 21:02:11 +02:00
Massimiliano Culpo
713eb210ac
zig: add v0.11.0 (#39484) 2023-08-17 19:18:00 +02:00
Massimiliano Culpo
a022e45866
ASP-based solver: optimize key to intermediate dicts (#39471)
Computing str(spec) is faster than computing hash(spec), and
since all the abstract specs we deal with come from user configuration
they cannot cover DAG structures that are not captured by str() but
are captured by hash()
2023-08-17 14:11:49 +02:00
eugeneswalker
82685a68d9
boost %oneapi: add cxxflags -Wno-error=enum-constexpr-conversion (#39477) 2023-08-17 07:49:20 -04:00
dependabot[bot]
b19691d503
Bump mypy from 1.5.0 to 1.5.1 in /lib/spack/docs (#39478)
Bumps [mypy](https://github.com/python/mypy) from 1.5.0 to 1.5.1.
- [Commits](https://github.com/python/mypy/compare/v1.5.0...v1.5.1)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-17 12:35:49 +02:00
eugeneswalker
54ea860b37
gmsh %oneapi: add cflag: -Wno-error=implicit-function-declaration (#39476) 2023-08-17 06:09:07 -04:00
eugeneswalker
fb598baa53
py-ruamel-yaml-clib %oneapi: -Wno-error=incompatible-function-pointer-types (#39480) 2023-08-17 11:59:45 +02:00
eugeneswalker
02763e967a
sz %oneapi: add cflag=-Wno-error=implicit-function-declaration (#39467) 2023-08-17 02:36:17 -07:00
Seth R. Johnson
2846be315b
kokkos: use 'when' instead of 'conflicts' for CUDA variants (#39463) 2023-08-17 05:12:52 -04:00
eugeneswalker
4818b75814
silo %oneapi: add cflags: -Wno-error=int, -Wno-error=int-conversion (#39475) 2023-08-17 04:42:58 -04:00
eugeneswalker
b613bf3855
py-matplotlib %oneapi: add cxxflags=-Wno-error=register (#39469) 2023-08-17 04:13:09 -04:00
Adam J. Stewart
3347372a7b
py-deepspeed: add new package (#39427) 2023-08-17 08:47:40 +02:00
Sergey Kosukhin
c417a77a19
snappy: patch and conflict for %nvhpc (#39063) 2023-08-17 08:44:38 +02:00
Martin Aumüller
90d0d0176c
botan: version 3 requires newer GCC (#39450)
e.g. 3.1.1 produces this during configuration when trying to install:
  ERROR: This version of Botan requires at least gcc 11.0
2023-08-17 08:34:43 +02:00
Adam J. Stewart
72b9f89504
py-setuptools: document Python 3.12 support (#39449) 2023-08-17 08:31:53 +02:00
Peter Scheibel
a89f1b1bf4
Add debugging statements to file search (#39121)
Co-authored-by: Scheibel <scheibel1@ml-9983616.the-lab.llnl.gov>
2023-08-17 08:31:06 +02:00
Adam J. Stewart
c6e26251a1
py-lightning: add v2.0.7 (#39468) 2023-08-17 08:19:50 +02:00
Harmen Stoppels
190a1bf523
Delay abstract hashes lookup (#39251)
Delay lookup for abstract hashes until concretization time, instead of
until Spec comparison. This has a few advantages:

1. `satisfies` / `intersects` etc don't always know where to resolve the
   abstract hash (in some cases it's wrong to look in the current env,
   db, buildcache, ...). Better to let the call site dictate it.
2. Allows search by abstract hash without triggering a database lookup,
   causing quadratic complexity issues (accidental nested loop during
   search)
3. Simplifies queries against the buildcache, they can now use Spec
   instances instead of strings.

The rules are straightforward:

1. a satisfies b when b's hash is prefix of a's hash
2. a intersects b when either a's or b's hash is a prefix of b's or a's
   hash respectively
2023-08-17 08:08:50 +02:00