Commit graph

29762 commits

Author SHA1 Message Date
Manuela Kuhn
c2aab98920
py-beautifulsoup4: add 4.11.1 (#32779) 2022-09-24 15:42:47 -05:00
iarspider
6ee7b5ad91
Add checksum for py-hist 2.6.1, py-boost-histogram 1.3.1 (#32787)
* Add checksum for py-hist 2.6.1

* Swap when and type
2022-09-24 15:41:18 -05:00
iarspider
02e4d4e546
Add checksum for py-google-auth 2.11.0, py-cachetools 5.2.0 (#32791)
* Add checksum for py-google-auth 2.11.0

* Swap when and type

* Update package.py
2022-09-24 15:27:19 -05:00
Tamara Dahlgren
4751881fd1
Fix two docstring typos (#32751) 2022-09-23 11:17:01 -07:00
Manuela Kuhn
3f28ef89cc
py-pytz: add 2022.2.1 (#32711) 2022-09-23 09:30:01 -06:00
Daryl W. Grunau
ca62819261
Packages/py scipy (#32767) 2022-09-23 07:41:44 -06:00
Manuela Kuhn
4bfa61c149
py-attrs: add 22.1.0 (#32762) 2022-09-23 04:09:44 -06:00
Harmen Stoppels
2fa9aff206
gitlab: cuda not compatible amazon linux 2 (#32678)
amazon linux 2 ships a glibc that is too old to work with cuda toolkit
for aarch64.

For example:

`libcurand.so.10.2.10.50` requires the symbol `logf@@GLIBC_2.27`, but
glibc is at 2.26.

So, these specs are removed.
2022-09-23 11:01:59 +02:00
Manuela Kuhn
e98e27ac3f
py-asttokens: add 2.0.8 (#32760) 2022-09-23 02:49:43 -06:00
iarspider
86958669cf
New packages: py-conan, py-node-semver, py-patch-ng (#32753)
* New packages: py-conan, py-node-semver, py-patch-ng

* Update var/spack/repos/builtin/packages/py-conan/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-conan/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-23 02:17:42 -06:00
Peter Scheibel
0a050785e9
Skip all tests using problematic fixture on python 2.7 (#32768) 2022-09-23 09:29:48 +02:00
Manuela Kuhn
8f5b847cb0
py-babel: add 2.10.3 (#32763)
* py-babel: add 2.10.3

* Update var/spack/repos/builtin/packages/py-babel/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-22 18:29:38 -06:00
iarspider
cbde650eed
New package: py-jaraco-classes (#32759)
* New package: py-jaraco-classes

* Update var/spack/repos/builtin/packages/py-jaraco-classes/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-22 14:41:53 -06:00
Matthieu Dorier
b18ab062cf
[py-tinydb] Added package py-tinydb (#32752)
* [py-tinydb] added package py-tinydb

* [py-tinydb] corrected version in dependency for py-tinydb

* [py-tinydb] update python dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [py-tinydb] update dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-22 15:32:19 -05:00
Peter Scheibel
4094e59ab8
Fetching: log more exceptions (#32736)
Include exception info related to url retrieval in debug messages
which otherwise would be swallowed. This is intended to be useful
for detecting if CA configuration interferes with downloads from
HTTPS links.
2022-09-22 10:54:52 -07:00
Adam J. Stewart
0869d22fcb
py-pytorch-lightning: add v1.7.7 (#32765) 2022-09-22 10:22:45 -07:00
Manuela Kuhn
be38400ce2
py-anyio: add 3.6.1 (#32756) 2022-09-22 10:30:14 -06:00
Hans Fangohr
2ad47c8ab2
Enable use of latest version of Octopus (12.0) (#32758)
Release notes:
https://www.octopus-code.org/documentation/main/releases/octopus-12/
2022-09-22 08:50:59 -07:00
iarspider
83d55daae5
New package: cepgen (#32754) 2022-09-22 08:47:44 -07:00
Andrey Alekseenko
0ddbb92ae3
GROMACS: update CMake version, and a couple more fixes (#32748)
- GROMACS is not an acronym (https://www.gromacs.org/about.html).
- GROMACS switched to LGPL a long time ago, so let's mention it first.
- CMake version required for `main` has been bumped to 3.18
  (https://gitlab.com/gromacs/gromacs/-/merge_requests/3093)
- `-DGMX_USE_OPENCL` flag was used before 2021; for newer versions,
  `-DGMX_GPU=OpenCL` is enough.
2022-09-22 07:10:30 -05:00
Tamara Dahlgren
54d06fca79
Add hash hint to multi-spec message (#32652) 2022-09-22 09:18:43 +02:00
Sreenivasa Murthy Kolam
457daf4be6
Add new variants (OPENCL and HIP) for MIVisionX recipe and their dependencies correctly. (#32486)
* add the 2 variants OPENCL and HIP and their dependencies correctly
for OPENCL - rocm-opencl, miopengemm and miopen-opencl
for HIP - miopen-hip
Earlier this was adding both the dependencies -miopen-hip and miopen-opencl
for both the backends which did not seem correct.
Also corrected the miopen-hip or miopen-opencl config.h  in patch() depending on the
backend
Also added libjpeg-turbo as it is required for building ROCAl .
the AMDRpp is still required for ROCAL inclusion but it currently does not build
AMDRpp will be added as a new spack recipe and the mivisionx will refer to that as a
dependency in future.

* fix style errors
* bump up the version for 5.2.3 release. tested +opencl, +hip and ~hip~opencl(cpu backend)

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-21 16:54:40 -07:00
renjithravindrankannath
c6d7557484
Update the version details for rccl, rvs, rocm-tensile rocm-5.2.3 release (#32741)
* ROCm 5.2.3 release changes
* Patch file for rccl

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-21 15:48:23 -07:00
Sreenivasa Murthy Kolam
e7f1f1af30
Update the version details for rocm-5.2.3 release (#32733)
* Bump up the version for rocm-5.2.3 release
* revert miopen-hip till the tag for mlirmiopen for 5.2.3 is available
2022-09-21 14:40:40 -07:00
Massimiliano Culpo
7e01a1252a
Allow conditional variants as first values in a variant directive (#32740) 2022-09-21 19:22:58 +02:00
Robert Pavel
d07b200b67
Spackage for mlperf's OpenCatalyst (#32553)
* Initial opencatalyst proxy app spackage

Initial spackage for opencatalyst proxy app. Includes exposing of
versions in dependency spackages

* Verified Functionality and Spack Style

Verified build of mlperf-opencatalyst and fixed lingering spack style
issues

* Making requested changes to py-ocp

Making requested changed to spackage

* Further Requested Changes
2022-09-21 10:45:48 -06:00
Vanessasaurus
663f55825d
flux-core: add v0.43.0 (#32744)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2022-09-21 18:26:41 +02:00
Vanessasaurus
dc214edc9c
flux-sched: add v0.24.0 (#32743)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2022-09-21 18:26:09 +02:00
Manuela Kuhn
36df918e7d
py-bleach: add 5.0.1 (#32727) 2022-09-21 09:48:16 -05:00
Laurent Aphecetche
874364bf4d
vgm: add v5-0 (#32742) 2022-09-21 15:38:52 +02:00
Tamara Dahlgren
f12ececee5
Docs: Update pipeline ci rebuild to add --tests (plus fixed typos) (#32048) 2022-09-21 14:23:58 +02:00
Garth N. Wells
1313bc99a6
dolfinx: fix depends_on directive missing a version (#32730) 2022-09-21 10:12:22 +02:00
Adam J. Stewart
e45bc8440b
pango: harfbuzz+coretext required on macOS (#32637) 2022-09-20 17:57:50 -06:00
Paulo Baraldi Mausbach
16692b802b
New python package support: py-river (#32718) 2022-09-20 15:47:08 -05:00
John W. Parent
fd66f55e3c
cmake: add v3.24.1 and v3.24.2 (#32654) 2022-09-20 11:24:16 -07:00
Wouter Deconinck
4b66364b06
gaudi: @:36 fails to build with fmt@9: (#32699)
Since fmt@9.0.0 and 9.1.0 were [added](6c4acfbf83) to spack a few days ago, gaudi fails to compile with default concretization. Since gaudi developers are usually paying attention to new versions of dependencies, I'm going to assume (perhaps optimistically) that the next bugfix version of gaudi will fix this (even though the issue has not been reported yet to Gaudi; I posted on the [key4hep public mirror](https://github.com/key4hep/Gaudi/issues/1)).
2022-09-20 11:20:55 -07:00
HELICS-bot
692f1d0e75
helics: Add version 3.3.0 (#32682)
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Ryan Mast <3969255+nightlark@users.noreply.github.com>
2022-09-20 11:53:59 -06:00
Stephanie Labasan Brink
2f796e1119
variorum: new versions 0.5 and 0.6, remove log option (#32731) 2022-09-20 11:46:04 -06:00
iarspider
ac459df2b6
Add fixed version 0.7.0 to cpu-features (#32726)
* Add fixed version 0.7.0 to cpu-features
* [@spackbot] updating style on behalf of iarspider

Co-authored-by: iarspider <iarspider@users.noreply.github.com>
2022-09-20 10:40:39 -07:00
Joel Falcou
d8e566d554
Update EVE to 2022.09 (#32729) 2022-09-20 10:35:39 -07:00
Luke Diorio-Toth
cc0e7c87c1
new version (py-multiqc v1.13) + new package (py-rich-click) (#32719)
* started updating multiqc package

* working now

* added py-rich-click

* fixed style

* changed py-matlibplot versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-networkx versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-coloredlogs versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed python versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-markdown versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-pyyaml requirement

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-requests requirements

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-spectra requirements

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-20 11:14:01 -06:00
Manuela Kuhn
757a2db741
py-python-gitlab: add 3.9.0 (#32723) 2022-09-20 10:41:53 -06:00
Manuela Kuhn
8409ec0f21
py-annexremote: add 1.6.0 (#32725) 2022-09-20 10:06:03 -06:00
Manuela Kuhn
0d3a4d799a
py-pybids: add 0.15.3 (#32722) 2022-09-20 11:03:33 -05:00
Manuela Kuhn
578d06a86a
py-nibabel: add 4.0.2 (#32721) 2022-09-20 11:01:06 -05:00
dependabot[bot]
e656b4659a
build(deps): bump codecov/codecov-action from 3.1.0 to 3.1.1 (#32717)
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3.1.0 to 3.1.1.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/master/CHANGELOG.md)
- [Commits](81cd2dc814...d9f34f8cd5)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-09-20 14:03:47 +02:00
natshineman
3b273e263b
osu-micro-benchmarks: add v6.1 (#32692) 2022-09-20 12:57:59 +02:00
Jim Galarowicz
24245be85a
must: fix incorrect cmake argument (#32671) 2022-09-20 12:45:15 +02:00
Massimiliano Culpo
71434d8b9d intel-oneapi-itac: remove UTF-8 character in docstring
This character causes random failures in CI for Python 2.7
2022-09-20 11:02:10 +02:00
iarspider
2518a55105
Add checksum for py-nbconvert 6.5.1 (#32646) 2022-09-20 09:31:48 +02:00