Relocation of `PT_INTERP` in ELF files already happens to work from long to short path, thanks to generic binary relocation (i.e. find and replace). This PR improves it:
1. Adds logic to grow `PT_INTERP` strings through patchelf (which is only useful if the interpreter and rpath paths are the _only_ paths in the binary that need to be relocated)
2. Makes shrinking `PT_INTERP` cleaner. Before this PR when you would use Spack-built glibc as link dep, and relocate
executables using its dynamic linker, you'd end up with
```
$ file exe
exe: ELF 64-bit LSD pie executable, ..., interpreter /////////////////////////////////////////////////path/to/glibc/lib/ld-linux.so
```
With this PR you get something sensible:
```
$ file exe
exe: ELF 64-bit LSD pie executable, ..., interpreter /path/to/glibc/lib/ld-linux.so
```
When Spack cannot modify the interpreter or rpath strings in-place, it errors out without modifying the file, and leaves both tasks to patchelf instead.
Also add type hints to `elf.py`.
Certain versions of ifx (the majority of those available) have an issue
where they are not compatible with TMP directories with dot chars
This precludes their use with CMake.
Remap TMP to point to the stage directory rather than whatever the TMP
default is
* Add fenics development version and ufl-legacy
* Make sure python and setuptools are added to ufl-legacy and add version 2022.3.0 as well
* Run black and add maintainer to fenics package
* Fix typo
* Use Fiat version 2019.1.0
* Run black
* Add back master branch of fiat
* Remove master from the list of dolfin versions and add one extra line of each deps instead
* Run black
* Do not specify python version in ufl-legacy
* Remove python dependency from ufl-legacy
* Remove python dependency from ffc
* Add special case for master in ffc
* Run black
* Remove master from loop in ffc
* Run black again
* geopm: Mark all as deprecated
- This recipe will be removed in a future release.
Signed-off-by: Brad Geltz <brad.geltz@intel.com>
* Add py-sphinx-emoji
Signed-off-by: Brad Geltz <brad.geltz@intel.com>
* Add py-dasbus
Signed-off-by: Brad Geltz <brad.geltz@intel.com>
* py-pygobject: Add v3.46.0
- Previous versions error during build phase.
Signed-off-by: Brad Geltz <brad.geltz@intel.com>
* py-sphinx-tabs: Add new versions
Signed-off-by: Brad Geltz <brad.geltz@intel.com>
* Add geopm-service
- Previous geopm package is now 2 packages:
geopm-service and geopm-runtime.
- The GEOPM service is designed as a systemd/dbus
service providing a userspace interface to
privileged hardware telemetry and configurations.
- Installing via spack will enable some userspace
testing, but generally most users will want to
install the GEOPM service via the system package
manager as root to get full functionality.
- This recipe will enable the creation of the fully
userspace geopm-runtime recipe which will replace
the old geopm recipe.
Signed-off-by: Brad Geltz <brad.geltz@intel.com>
---------
Signed-off-by: Brad Geltz <brad.geltz@intel.com>
* py-textual: New package py-textual
* py-textual: Depend on py-mdit-py-plugins
* py-textual: Added dependency on python@3.8:3
* py-textual: Added a comment about why there is a dependency on
py-mdit-py-plugins
* py-textual: Ran black
---------
Co-authored-by: Alex C Leute <aclrc@rit.edu>
* add pytest-aiohttp
* black
* py-setuptools -> py-setuptools-scm
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
VTK struggles to consume some Spack-derived packages on Windows:
Patch VTK to allow a smoother integration
Also add install for examples as they are not part of the install
interface.
gl2ps tries to build static and shared libs simultaneously with
the same target name on the generator side. This causes a name
clash issue for Ninja on Windows (where the extension is .lib
in both cases).
Add a variant on Windows to force building only one of shared
or static, and patch the CMake build to enable use of this
variant.
* gitlab: remove commented-out duplicate entries
* gitlab: reclassify some packages from "huge" to "large"
Our observed max memory usage for these packages is as follows:
hipblas: 7.7G
qt: 6.6G
visit: 9.7G
All of these should fit within a "large" request (currently 12G).
* gitlab: remove pango from list of huge packages
This package is not currently built by any of our CI stacks.
* gitlab: update requests for high memory packages
Refine resource requests for memory-intensive packages based on
max memory usage data.
- Adds perl-sql-translator and its missing deps:
- Adds perl-import-into
- Adds perl-package-variant
- Adds perl-strictures
Built with build-time tests and comes with a simple run-time test.
Add the empty deptype `spack.deptypes.NONE`.
Test the case `traverse_nodes(deptype=spack.deptypes.NONE)` to not
traverse dependencies, only de-duplicate.
Use the construct in environment views that otherwise would branch on
whether deps are enabled or not.
* ensure umpire~cuda~rocm when ~cuda~rocm
* MDAnalysis: add v2.7.0
* Apply suggestions from code review
* license
* review changes
* add gsd and py-cmake versions
* Update package.py
* py-cmake
* Update package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* fix and reorder
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* add py-vl-convert-python
* code format
* Update package.py
add homepage
* Update var/spack/repos/builtin/packages/py-vl-convert-python/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* remove old versions, add todo
* Update var/spack/repos/builtin/packages/py-vl-convert-python/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* remove blank line
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* New package: py-metrics
* [py-metrics] cleaned up extra comment
* Updated copyright and ran black
* py-pathspec: Added version 0.5.5
---------
Co-authored-by: vehrc <vehrc@rit.edu>
Co-authored-by: Jen Herting <jen@herting.cc>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
* py-frozendict: patch up for Python 3.11
See also Marco-Sulla/python-frozendict#68, rely on a pure Python
implementation when 3.11+ is used.
* mention related Github issue
* new builtin package: biobb-common
* removed whitespace for the style test
* replaced ' by " for the style test
* changed import line for the style test
* Update var/spack/repos/builtin/packages/biobb-common/package.py
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
* Update var/spack/repos/builtin/packages/biobb-common/package.py
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
* Update var/spack/repos/builtin/packages/biobb-common/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* removed test
* using pypi instead of git
I hope this is declared the right way.
I tried to test it locally but I am having problems with a dependency (openblas) thus I can not even try if this works.
* upgraded version
* Added py prefix
* removed biopython version restriction
* directory with new py-prefixed name
* Delete old non-prefixed package
* Update var/spack/repos/builtin/packages/py-biobb-common/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
