Commit graph

2406 commits

Author SHA1 Message Date
Massimiliano Culpo
497bbb3ae3 added package : pexsi (#1550)
* pexsi : added package
* cp2k : added pexsi (works for gcc+openmpi with and without plumed)
2016-09-03 08:13:47 -07:00
becker33
fa310c825d Merge pull request #1704 from eschnett/eschnett/libiconf-gets
Make libiconv work with C11
2016-09-02 16:46:40 -07:00
becker33
6de191a926 Merge pull request #1708 from robertdfrench/globus-toolkit
Globus Toolkit
2016-09-02 15:31:34 -07:00
becker33
ea6143402f Merge pull request #1715 from alfredo-gimenez/bugfix/vim
Fix vim package.
2016-09-02 14:59:14 -07:00
Alfredo Gimenez
19102559f0 Add sbt (scala build tool) package 2016-09-02 14:15:20 -07:00
Alfredo Gimenez
817c120b1c Fix vim package 2016-09-02 14:09:46 -07:00
Erik Schnetter
d78d18c4bd Update OpenMPI description (#1705) 2016-09-02 10:57:35 -07:00
Jeffrey Salmond
5146c64dfc Fixes for the ImageMagick package. (#1709)
* add pango dependency

* add new package ghostscript-fonts & add to ImageMagick as dependency

also tell ImageMagick's configure where the font dir is!

* refactor to fix flake8

* add homepage to ghostscript-fonts

* use install_tree

* remove unneeded import
2016-09-02 10:41:35 -07:00
Erik Schnetter
c7bb523c8f Declare qthreads dependency on automake (#1711) 2016-09-02 10:34:07 -07:00
Robert.French
d876d9b778 Globus Toolkit 2016-09-02 16:04:26 +00:00
Erik Schnetter
9ceb3f6b49 Add two famous old versions of autoconf
These old versions are often used because their immediate successors are incompatible in some way.
2016-09-02 11:23:33 -04:00
Erik Schnetter
0bd63ce8be Make libiconv work with C11
C11 does not provide gets() any more, so we cannot reference it
2016-09-02 10:53:59 -04:00
Todd Gamblin
8d755c010d Merge pull request #1658 from LLNL/features/git-lfs
Add git-lfs package.
2016-09-01 11:58:18 -07:00
Erik Schnetter
932cd6fa19 Switch lzo download from https to http
lzo's download server does not present a valid certificate, so that downloads via https are failing. Spack's MD5 checksum still ensure a safe download.

Closes #1675.
2016-08-31 12:41:04 -04:00
Adam J. Stewart
1be6267149 Undo changes to trailing triple quotes in docstring 2016-08-30 16:28:55 -05:00
Adam J. Stewart
9b455e9254 Resolve new documentation issues that have cropped up 2016-08-30 15:58:22 -05:00
Adam J. Stewart
a0c8aca3a2 Remove py-mercurial, going with mercurial package instead 2016-08-30 15:35:58 -05:00
Adam J. Stewart
eb56744f4d Fix package docstrings, #1612 2016-08-30 15:29:50 -05:00
Adam J. Stewart
7f9d098c2f Add mercurial package, used as test dependency 2016-08-30 15:21:15 -05:00
Todd Gamblin
7e4c6afd91 Merge pull request #1412 from adamjstewart/features/cmake
Overhaul of CMake package and compression libraries
2016-08-30 12:18:56 -07:00
Todd Gamblin
abd1546d86 Merge pull request #1668 from ax3l/topic-pngwriter
PNGwriter: Add Spack Package
2016-08-30 10:21:27 -07:00
Axel Huebl
d2d2234def
HDF5 Dependency: Rewrite to Union
@adamjstewart
```
think you'll find that if you try running something like:
spack spec libsplash ^hdf5@1.8.15
It will complain that libsplash does not depend on hdf5.
This is a bug in Spack's dependency resolution. A workaround
for this is to tell it to always depend on hdf5.
```

@davydden
```
to expand on @adamjstewart comment, spack will make a union
of dependencies,
i.e. hdf5@1.8.6: + hdf5+mpi = hdf5:1.8.6:+mpi, that's why it works.
```

thank you for the hint!
2016-08-30 17:00:09 +02:00
Axel Huebl
03c4d65af1
PNGwriter: Add Spack Package
Adds a package for
[PNGwriter](https://github.com/pngwriter/pngwriter/),
a simple high-level C++ png API used in scientific projects.

```
PNGwriter is a very easy to use open source graphics library that
uses PNG as its output format. The interface has been designed to be
as simple and intuitive as possible. It supports plotting and reading
pixels in the RGB (red, green, blue), HSV (hue, saturation,
value/brightness) and CMYK (cyan, magenta, yellow, black) colour
spaces, basic shapes, scaling, bilinear interpolation, full TrueType
antialiased and rotated text support, bezier curves, opening existing
PNG images and more.
```

PNGwriter is a dependency for [PIConGPU](http://picongpu.hzdr.de),
an open-source, many-core, fully-relativistic particle-in-cell code
and further software developed at
[Helmholz-Zentrum Dresden - Rossendorf](https://www.hzdr.de).
2016-08-30 12:45:53 +02:00
Axel Huebl
3aaa077c9f
libSplash: Add Spack Package
Adds a package for
[libSplash](https://github.com/ComputationalRadiationPhysics/libSplash),
a high-level library around serial and parallel HDF5 for regular
grids and particle data sets.

```
libSplash aims at developing a HDF5-based I/O library for HPC
simulations. It is created as an easy-to-use frontend for the
standard HDF5 library with support for MPI processes in a cluster
environment. While the standard HDF5 library provides detailed
low-level control, libSplash simplifies tasks commonly found in
large-scale HPC simulations, such as iter- ative computations
and MPI distributed processes.
```

libSplash is a dependency for [PIConGPU](http://picongpu.hzdr.de),
an open-source, many-core, fully-relativistic particle-in-cell
code and further software developed at
[Helmholz-Zentrum Dresden - Rossendorf](https://www.hzdr.de).

libSplash builds in two versions, one without MPI writing
domain-decomposed posix-style HDF5 files per process and one
(default) with MPI and MPI-I/O ("parallel HDF5") support
aggregating into a single file per MPI communicator.

libSplash is used in conjunction with
[openPMD](http://openPMD.org), see also
[github.com/openPMD/](https://github.com/openPMD/).
2016-08-30 12:42:39 +02:00
Todd Gamblin
47bf7ecb2b Merge pull request #1652 from ax3l/topic-updateAdios110
Update ADIOS Package
2016-08-29 22:59:39 -07:00
Elizabeth Fischer
cf11c32720 libpciaccess: Changed libtool to a build dependency. (#1602) 2016-08-29 22:11:27 -07:00
Axel Huebl
0f40175524
Remove Space, Enable Parallel
- remove space before comma
- enable parallel build again (seems to work)
2016-08-30 02:02:48 +02:00
Axel Huebl
ecacce7e07
ADIOS: Use NetCDF Prefix from spec's 2016-08-30 00:51:44 +02:00
Gregory Lee
e32247e53a added qt-creator (#1659) 2016-08-29 15:45:16 -07:00
Axel Huebl
37f489886e
Defaults: MPI=True, Fortran=False
- ADIOS is mainly a parallel I/O library
- a Fortran compiler is non-standard in a minimal install
2016-08-30 00:14:29 +02:00
Axel Huebl
b33777fd2f
RM Outdated Comments, Versions & Code 2016-08-29 23:18:31 +02:00
Axel Huebl
88254a14a7
Always External MXML; type='build'
- always use `mxml` as an external dependency in spack
- declare `build`-only dependencies correctly
2016-08-29 23:01:20 +02:00
Axel Huebl
e1464ece55
ADIOS: disable parallel make 2016-08-29 19:06:22 +02:00
Robert D. French
a21d3d353b New URL scheme for newer (and older) PDTs (#1651) 2016-08-29 10:01:04 -07:00
Axel Huebl
f2eb1c93df
ADIOS: Run Autotools First 2016-08-29 18:42:07 +02:00
Robert D. French
4095eb2196 Ole' GNU nano; Actually ran flake8 (#1649) 2016-08-29 09:21:19 -07:00
Todd Gamblin
57033a62fa Merge pull request #1563 from adamjstewart/features/sphinx
Add all Sphinx dependencies
2016-08-29 09:08:46 -07:00
Axel Huebl
4bd863761a
Update ADIOS Package
This PR updates the ADIOS package.

**Changes:**

- add latest stable release `1.10.0`
- add previous versions (hashes)
- add default license header
- add build options (shamelessly taken from HDF5 package)
- add validation for excisting FC (as in HDF5) and make optional
- handle mxml dependency correctly (not required in 1.10.0+)
- add `CFLAGS=-fPIC` to build shared (python) libs in ADIOS' lib
- remove `-DMPICH_IGNORE_CXX_SEEK` since it is normally not required
- remove `MPICC/CXX?FC` since `--with-mpi` just performs well
- add transforms:
  - `zlib`: useful (optional) default
  - `szip`: optional (compile often broken)
- add transports that are not as performant as the `.bp` format:
  - `hdf5`: non-default
  - `netcdf`: non-default, close #1610
2016-08-29 17:16:15 +02:00
Todd Gamblin
31cab4bae2 Merge pull request #1619 from davydden/pkg/nwchem_macos_fix
nwchem: use basename for CC and FC
2016-08-29 06:51:14 -07:00
Denis Davydov
66ea42f8d7 nwchem: use basename for CC and FC 2016-08-29 15:15:23 +02:00
Todd Gamblin
f5c9a8c2ee Merge pull request #1650 from davydden/pkg/ape_octopus_comments
ape octopus: in-code comments
2016-08-29 06:02:19 -07:00
Denis Davydov
5333a799ea octopus: in-code comments to explain compiler flags 2016-08-29 08:45:28 +02:00
Denis Davydov
90070c317d ape: in-code comments to explain compiler flags 2016-08-29 08:45:15 +02:00
Todd Gamblin
a3f1ae8c4f Merge pull request #1041 from adamjstewart/features/matplotlib
Matplotlib Python package overhaul
2016-08-28 21:22:44 -07:00
Abhinav Bhatele
a9a29d207d add versions 2.2rc2 and 2.1 to the mvapich2 package (#1630) 2016-08-28 20:18:57 -07:00
Erik Schnetter
e119c32a9c Hot-fix for qthreads (#1632)
The download tarball for qthreads vanished. Install it from a git branch instead as temporary work-around.
2016-08-28 20:18:24 -07:00
Jeffrey Salmond
82808f944a New package: opencoarrays (#1633)
* opencoarrays: new package

* opencoarrays: remove tests from install due to (unimportant) failures in some configurations

* opencoarrays: fix flake8 errors
2016-08-28 20:17:22 -07:00
Todd Gamblin
ed365614f4 Add git-lfs package. 2016-08-28 19:27:59 -07:00
Robert D. French
974749aaf6 Provide mpi-less variant for nco (#1643) 2016-08-28 19:15:15 -07:00
Erik Schnetter
6acfcd82b1 Update Julia to 0.5 release branch; install some Julia package as well (#1637)
* Update Julia to 0.5 release branch; install some Julia package as well

* Add comments, correct flake8 error

* Correct flake8 error
2016-08-28 17:46:10 -07:00