Adam J. Stewart
f832f12ca6
Add latest version of py-pytest-runner ( #13299 )
2019-10-20 11:18:55 -05:00
Adam J. Stewart
3a2eeedf20
Add latest version of py-pytest-mock ( #13300 )
2019-10-20 11:18:39 -05:00
Adam J. Stewart
4d7226e561
Add latest version of py-pytest-httpbin ( #13301 )
2019-10-20 11:18:04 -05:00
Adam J. Stewart
63dd97f84e
Add latest version of py-pytest-cov ( #13302 )
2019-10-20 11:17:47 -05:00
Adam J. Stewart
03b1af0d96
Add latest version of py-pysocks ( #13303 )
2019-10-20 11:17:27 -05:00
Adam J. Stewart
10065b325d
Add latest version of py-pycparser ( #13304 )
2019-10-20 11:17:11 -05:00
Adam J. Stewart
d4f409ea51
Add latest version of py-psutil ( #13305 )
2019-10-20 11:16:53 -05:00
Adam J. Stewart
04af812e03
Add latest version of py-pip ( #13306 )
2019-10-20 11:16:36 -05:00
Adam J. Stewart
c130a2980f
Add latest version of py-mock ( #13308 )
2019-10-20 11:16:07 -05:00
Adam J. Stewart
0d189e779a
Add latest version of py-markupsafe ( #13309 )
2019-10-20 11:15:51 -05:00
Adam J. Stewart
30fdff4ff9
Add latest version of py-lxml ( #13310 )
2019-10-20 11:15:32 -05:00
Adam J. Stewart
51432aa92e
Add latest version of py-jinja2 ( #13311 )
2019-10-20 11:15:16 -05:00
Adam J. Stewart
d61b5125c5
Add latest version of py-itsdangerous ( #13312 )
2019-10-20 11:15:01 -05:00
Adam J. Stewart
e05d165f92
Add latest version of py-idna ( #13313 )
2019-10-20 11:14:46 -05:00
Adam J. Stewart
ac0fee0f34
Add latest version of py-hypothesis ( #13314 )
2019-10-20 11:14:32 -05:00
Adam J. Stewart
5aea70e733
Add latest version of py-httpbin ( #13315 )
2019-10-20 11:14:17 -05:00
Adam J. Stewart
db8f83d333
Add latest version of py-flask ( #13316 )
2019-10-20 11:13:55 -05:00
Adam J. Stewart
de6d53b626
Add latest version of py-torchvision ( #13289 )
2019-10-20 11:12:43 -05:00
Adam J. Stewart
5995c3f85b
Add latest version of py-typing-extensions ( #13288 )
2019-10-20 11:12:27 -05:00
Adam J. Stewart
4e2cce2c9f
Add latest version of py-urllib3 ( #13286 )
2019-10-20 11:11:41 -05:00
Adam J. Stewart
d2202f6d98
Add latest version of py-virtualenv ( #13285 )
2019-10-20 11:11:23 -05:00
Adam J. Stewart
78942c7840
Add latest version of py-werkzeug ( #13284 )
2019-10-20 11:11:06 -05:00
Adam J. Stewart
0443581a20
Add py-mypy-extensions package ( #13283 )
2019-10-20 11:10:40 -05:00
Adam J. Stewart
92a359e4ba
Add py-mypy package ( #13282 )
2019-10-20 11:10:22 -05:00
Adam J. Stewart
9ac7e098d9
Add py-pytest-forked package ( #13281 )
2019-10-20 11:10:04 -05:00
Adam J. Stewart
1dc99765e9
Add py-raven package ( #13280 )
2019-10-20 11:09:44 -05:00
Adam J. Stewart
a6bc0c7ee0
Add py-flake8-import-order package ( #13273 )
2019-10-20 11:09:23 -05:00
Adam J. Stewart
00f766b248
Add py-sphinxcontrib-devhelp package ( #13278 )
2019-10-20 11:09:04 -05:00
Adam J. Stewart
c8285da8e7
Add py-sphinxcontrib-applehelp package ( #13279 )
2019-10-20 11:08:51 -05:00
Adam J. Stewart
d37c95b80b
Add py-sphinxcontrib-htmlhelp package ( #13277 )
2019-10-20 11:08:34 -05:00
Adam J. Stewart
7bda2fe292
Add py-sphinxcontrib-jsmath package ( #13276 )
2019-10-20 11:08:16 -05:00
Adam J. Stewart
d4ac57f3a3
Add py-sphinxcontrib-qthelp package ( #13275 )
2019-10-20 11:07:54 -05:00
Adam J. Stewart
f35bcaf83b
Add py-sphinxcontrib-serializinghtml package ( #13274 )
2019-10-20 11:07:31 -05:00
Adam J. Stewart
3e18e664fc
Add py-typed-ast package ( #13272 )
2019-10-20 11:07:01 -05:00
Adam J. Stewart
95b7f31112
Add py-docutils-stubs package ( #13271 )
2019-10-20 11:06:38 -05:00
Adam J. Stewart
4f56bcc790
Add py-brotlipy package ( #13270 )
2019-10-20 11:06:18 -05:00
Adam J. Stewart
0fb563f3d9
GCC: fix build on macOS Catalina ( #13202 )
...
* GCC: speed up build
* Add back 3-stage bootstrapping
2019-10-19 12:18:31 -05:00
Adam J. Stewart
306346356c
brotli: fix darwin install name ( #13258 )
2019-10-19 12:18:06 -05:00
Axel Huebl
327a7368e9
ADIOS2: Dataspaces, libffi, libfabric ( #13230 )
...
* DataSpaces: 1.8.0
Add a newer release of DataSpaces for ADIOS2.
Also add missing `-fPIC` flags since this is a static library.
* ADIOS2: Dataspaces, libffi, libfabric
Add missing dependencies to ADIOS2. Without explicit control,
those dependencies might get picked up from the system environment
and will cause unstable builds.
* Hide transitive SST dependencies
* ADIOS2: Simplify SST CMake Flags
As proposed by Chuck
2019-10-18 13:26:56 -07:00
wspear
f9e7bf295c
Updated to latest version. Removed dependency on node-js ( #13055 )
...
* Updated to latest version. Removed dependency on node-js
* Refined dependencies
* Added dependencies, including version-specific ones. Re-added 0.9.4.
* Updated py-jupyterhub requirements. Enabled version 0.9.4 and 1.0.0
2019-10-18 12:53:47 -05:00
Christoph Junghans
b4383825be
fftw: altivec only works for float ( #13242 )
2019-10-18 10:36:40 -06:00
wspear
40a11c6bf6
Added package py-python-oauth2, a dependency of py-jupyterhub@0.9.4. … ( #13140 )
...
* Added package py-python-oauth2, a dependency of py-jupyterhub@0.9.4. Depends on #13132 , #13133 and #13134
* Remove optional dependencies
2019-10-18 11:29:26 -05:00
Justin S
af3c238c31
interproscan: add 5.38-76.0 ( #13253 )
2019-10-17 20:52:54 -05:00
Massimiliano Culpo
9ddc98e46a
Separate setting build environment and run environment in packages ( #11115 )
...
* Methods setting the environment now do it separately for build and run
Before this commit the `*_environment` methods were setting
modifications to both the build-time and run-time environment
simultaneously. This might cause issues as the two environments
inherently rely on different preconditions:
1. The build-time environment is set before building a package, thus
the package prefix doesn't exist and can't be inspected
2. The run-time environment instead is set assuming the target package
has been already installed
Here we split each of these functions into two: one setting the
build-time environment, one the run-time.
We also adopt a fallback strategy that inspects for old methods and
executes them as before, but prints a deprecation warning to tty. This
permits to port packages to use the new methods in a distributed way,
rather than having to modify all the packages at once.
* Added a test that fails if any package uses the old API
Marked the test xfail for now as we have a lot of packages in that
state.
* Added a test to check that a package modified by a PR is up to date
This test can be used any time we deprecate a method call to ensure
that during the first modification of the package we update also
the deprecated calls.
* Updated documentation
2019-10-17 10:17:21 -07:00
wspear
93c34039e4
python-editor: added new package at v1.0.4 ( #13126 )
2019-10-17 08:46:34 +02:00
Christoph Junghans
6cd997e743
eospac: avoid conflict with linux's getopt ( #13241 )
...
* eospac: avoid conflict with linux's getopt
* Update package.py
2019-10-16 18:46:26 -07:00
Jeffrey Salmond
e17df2e8f5
add python version 3.8.0 ( #13218 )
2019-10-16 14:42:36 -07:00
Christoph Junghans
b0543005b2
expat: don't pick up external docbook ( #13228 )
2019-10-16 05:59:51 -07:00
Jeffrey Salmond
f08f4201c7
add latest version of vim ( #13203 )
2019-10-15 20:43:03 -07:00
Satish Balay
5ea0eed287
hypre: add version 2.18.1 ( #13224 )
2019-10-15 13:05:51 -07:00
Axel Huebl
dc3a9618a0
ADIOS2: Default no Python ( #13220 )
...
Turn off the python variant by default.
2019-10-15 14:55:45 -04:00
Andrey Prokopenko
41e7e5693e
arborx: update v0.8-beta to v0.8-beta2 ( #13143 )
...
- Require Kokkos with c++14
- Update the case of CMake options
2019-10-15 11:19:16 +02:00
Andrey Prokopenko
ce5333c1fd
kokkos: add cxxstd variant ( #13142 )
2019-10-15 11:14:37 +02:00
Tim Haines
27a339eeb2
Add version 0.177 of elfutils ( #13129 )
...
* Add version 0.177
* Fix spacing
2019-10-14 22:22:11 -07:00
t-karatsu
8f69c9d334
ntpoly: Define module directry when compiling with Fujitsu compiler. ( #13120 )
...
* ntpoly: Define module directry when compiling with Fujitsu compiler.
* Delete quotes.
2019-10-14 22:20:52 -07:00
Massimiliano Culpo
5cd28847e8
filter_file uses "surrogateescape" error handling ( #12765 )
...
From Python docs:
--
'surrogateescape' will represent any incorrect bytes as code points in
the Unicode Private Use Area ranging from U+DC80 to U+DCFF. These
private code points will then be turned back into the same bytes when
the surrogateescape error handler is used when writing data. This is
useful for processing files in an unknown encoding.
--
This will allow us to process files with unknown encodings.
To accommodate the case of self-extracting bash scripts, filter_file
can now stop filtering text input if a certain marker is found. The
marker must be passed at call time via the "stop_at" function argument.
At that point the file will be reopened in binary mode and copied
verbatim.
* use "surrogateescape" error handling to ignore unknown chars
* permit to stop filtering if a marker is found
* add unit tests for non-ASCII and mixed text/binary files
2019-10-14 20:35:14 -07:00
Greg Becker
3f46f03c83
bugfix: install --only dependencies works in env ( #13090 )
...
* bugfix: install --only dependents works in env
includes regression testing
2019-10-14 17:50:38 -07:00
Satish Balay
a63e64f1c4
py-petsc4py: add version 3.12.0 ( #13209 )
...
* py-petsc4py: add version 3.12.0
* fix typo wrt maintainer
2019-10-14 15:27:28 -05:00
William F Godoy
dafee9df31
Complete cleanup of the adios2 package configuration ( #13107 )
...
Provide up to date specs for build options
Remove non-production versions
Format using autopep8 and flake8
Separate cmake options in adios2 2.4.0 version
Keep default as True as much as possible
Support for Python 2 and 3 for adios2 versions <= 2.4.0
Starting v2.5.0 only Python 3 is supported
Addressing review suggestions
2019-10-14 12:47:55 -07:00
Hadrien G
be8f8856ce
New ACTS versions ( #12484 )
...
* Add new ACTS releases
* Update ACTS dependency requirements
* We can actually be more specific here
* The material plugin is gone as of ACTS v0.10.0
* Add 0.10.4 release
* Remove material mapping plugin
It was merged into core as of 0.10.x, and given ACTS' youth it is unlikely to have actual users at this point in time.
2019-10-14 14:01:53 -05:00
wspear
48b7370265
py-pymongo: added new package at version 3.9.0 ( #13132 )
2019-10-14 20:57:54 +02:00
wspear
8a1e5f68f4
py-alembic: fixed missing dependencies. ( #13127 )
2019-10-14 10:53:01 +02:00
Jeffrey Salmond
2bb1bae2ae
dialign: added new package at version 2.2.1 ( #13130 )
...
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-10-14 10:49:31 +02:00
Justin S
c851cfd122
py-smart-open: new package at 1.8.4 ( #13135 )
2019-10-14 10:42:49 +02:00
wspear
bdcf9ba5cd
py-python-memcached: added new package at version 1.59 ( #13133 )
...
* Added package py-python-memcached, a dependency of python-oauth2
* Fixed line lengths
2019-10-14 10:35:41 +02:00
wspear
04af0eb5a2
py-redis: added new package at version 3.3.8 ( #13134 )
2019-10-14 10:34:37 +02:00
Adam J. Stewart
27ad28e51a
Add py-kiwisolver 1.1.0 ( #13170 )
2019-10-13 22:26:49 -07:00
Satish Balay
846daa0404
amrex: add version 19.10 ( #13206 )
2019-10-13 19:57:11 -05:00
Satish Balay
20c2fa62aa
slepc: use spack specified python in configure ( #13207 )
2019-10-13 19:56:27 -05:00
Satish Balay
1f29785b88
omega-h: add version 9.29.0 ( #13208 )
2019-10-13 19:54:41 -05:00
Adam J. Stewart
ce6bf5fba1
Add apr-util 1.6.1 ( #13145 )
2019-10-13 19:52:58 -05:00
Adam J. Stewart
c121ddb300
Add apr 1.7.0 ( #13146 )
2019-10-13 19:52:40 -05:00
Adam J. Stewart
7b21ac3188
Add bison 3.4.2 ( #13147 )
2019-10-13 19:52:10 -05:00
Adam J. Stewart
30c5f88255
Add freetype 2.10.1 ( #13149 )
2019-10-13 19:51:53 -05:00
Adam J. Stewart
518a7c5bb9
Add libpng 1.6.37 ( #13153 )
2019-10-13 19:51:04 -05:00
Adam J. Stewart
b3fcfc1cb2
Add lz4 1.9.2 ( #13155 )
2019-10-13 19:50:44 -05:00
Adam J. Stewart
48cd455cc1
Add mercurial 5.1.2 ( #13156 )
2019-10-13 19:50:19 -05:00
Adam J. Stewart
e5d1810bec
Add subversion 1.12.2 ( #13158 )
2019-10-13 19:49:53 -05:00
Adam J. Stewart
143afbd3a0
Add py-attrs 19.2.0 ( #13163 )
2019-10-13 19:49:29 -05:00
Adam J. Stewart
4b2b548981
Add py-cython 0.29.13 ( #13166 )
2019-10-13 19:49:07 -05:00
Adam J. Stewart
2884a862e8
Add py-docutils 0.15.2 ( #13167 )
2019-10-13 19:47:25 -05:00
Adam J. Stewart
83a96755ef
Add py-joblib 0.14.0 ( #13169 )
2019-10-13 19:47:07 -05:00
Adam J. Stewart
e72c20bc47
Add py-more-itertools 7.2.0 ( #13171 )
2019-10-13 19:46:13 -05:00
Adam J. Stewart
d61743561b
Add py-pillow 6.2.0 ( #13175 )
...
* Add py-pillow 6.2.0
* Flake8 fix
2019-10-13 19:45:23 -05:00
Adam J. Stewart
ec3b891714
Add py-py 1.8.0 ( #13177 )
2019-10-13 19:44:08 -05:00
Adam J. Stewart
f7b3524765
Add py-pyflakes 2.1.1 ( #13178 )
2019-10-13 19:43:50 -05:00
Adam J. Stewart
1276a182b6
Add py-pygments 2.4.2 ( #13179 )
2019-10-13 19:43:34 -05:00
Adam J. Stewart
8c2096aac5
Add py-pyparsing 2.4.2 ( #13180 )
2019-10-13 19:43:14 -05:00
Adam J. Stewart
d6f6c41d58
Add py-pytz 2019.3 ( #13182 )
2019-10-13 19:42:55 -05:00
Adam J. Stewart
2835e9bf17
Add py-setuptools-scm 3.3.3 ( #13183 )
2019-10-13 19:42:35 -05:00
Adam J. Stewart
ea4f9ebbde
gmp: fix make check on catalina ( #13201 )
2019-10-12 20:21:45 -05:00
Adam J. Stewart
08d448bc54
mpfr: fix make check on catalina ( #13200 )
2019-10-12 20:21:23 -05:00
Adam J. Stewart
41e0b069d7
Fix external numpy package support ( #13197 )
2019-10-12 20:21:03 -05:00
Adam J. Stewart
3df6b05c04
Add py-setuptools 41.4.0 ( #13184 )
2019-10-12 20:20:41 -05:00
Adam J. Stewart
ebfd06d248
Add py-pytest 5.2.1 ( #13181 )
2019-10-12 20:18:31 -05:00
Adam J. Stewart
328583decc
Add py-pluggy 0.13.0 ( #13176 )
2019-10-12 20:14:12 -05:00
Adam J. Stewart
2ced690efb
Add py-pandas 0.25.1 ( #13174 )
2019-10-12 20:12:41 -05:00
Adam J. Stewart
50e9dc5e2e
Add py-packaging 19.2 ( #13173 )
2019-10-12 20:12:19 -05:00
Adam J. Stewart
101c287e7b
Add py-numexpr 2.7.0 ( #13172 )
2019-10-12 20:11:57 -05:00
Adam J. Stewart
db4d06f953
Add py-importlib-metadata 0.23 ( #13168 )
2019-10-12 20:08:33 -05:00
