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Author SHA1 Message Date
Adam J. Stewart
9d99042fed Add Psi4 package 2016-06-15 14:17:29 -05:00
Denis Davydov
0e04e65ae0 trilinos: specify superlu-dist version dependency 2016-06-15 18:44:59 +02:00
Denis Davydov
5fe531050c flake8 fixes for dealii 2016-06-15 18:33:34 +02:00
Denis Davydov
e76083205f flake8 fixes for slepc 2016-06-15 18:33:08 +02:00
Denis Davydov
6390acc660 flake8 fixes for petsc 2016-06-15 18:32:42 +02:00
Denis Davydov
6d714e4425 flake8 fixes for superlu-dist 2016-06-15 18:31:39 +02:00
Denis Davydov
d0d83cfe1e slepc: build by default with Arpack 2016-06-15 18:21:13 +02:00
Denis Davydov
d04dc8440f dealii: specify petsc/slepc version dependencies 2016-06-15 18:21:13 +02:00
Denis Davydov
4d40f86bd3 trilinos: add 12.6.2 and 12.6.3 2016-06-15 18:21:13 +02:00
Denis Davydov
5358ffbe5a slepc: add 3.6.3 and 3.7.1; specify petsc version dependency 2016-06-15 18:21:13 +02:00
Denis Davydov
9ceb8fea78 petsc: add 3.6.4 and 3.7.2; specify superlu-dist version dependency 2016-06-15 18:21:13 +02:00
Denis Davydov
a860a3d614 superlu-dist: avoid harcoding blas/lapack/mpi; remove preferred version 2016-06-15 18:21:13 +02:00
Todd Gamblin
c803f7ae98 Merge pull request #1045 from eschnett/eschnett/openmpi-verbs-usr 
Do not pass "/usr" or "/usr/local" as path to configure
 2016-06-15 09:06:12 -07:00
Todd Gamblin
4ede87a8b0 Merge pull request #1058 from eschnett/eschnett/blosc 
Add packages c-blosc and hdf5-blosc
 2016-06-15 09:04:48 -07:00
Todd Gamblin
9dd1f2747a Merge pull request #1028 from JRWynneIII/boost-graph-parallel-fix 
Add variant for boost graph and parallel graph
 2016-06-15 09:03:01 -07:00
Todd Gamblin
08badb5a35 Merge pull request #1040 from KineticTheory/pkg-trilinos 
Make Boost an optional feature of Trilinos.
 2016-06-15 08:57:38 -07:00
Todd Gamblin
ff3469385b Merge pull request #1037 from KineticTheory/develop 
Package serf also depends on zlib.
 2016-06-15 08:57:14 -07:00
Todd Gamblin
bfedeadacb Merge pull request #1031 from opoplawski/pcre 
Add patch to compile pcre with Intel 16.0.3 compiler
 2016-06-15 08:56:53 -07:00
alalazo
b09bee8158 qa : fixed flake8 issues 2016-06-15 13:29:30 +02:00
alalazo
b59d4f243b openmpi, mvapich2, mpich : filtered out "--Wl,--enable-new-dtag" in wrappers, as it turns RPATH into RUNPATH 
Apart from that turned `os.path.join` into `join_path` and `os.environ` into `env` in the packages
 2016-06-15 13:21:39 +02:00
Erik Schnetter
05d7378da5 Install shared libraries correctly on Linux 2016-06-14 17:13:20 -04:00
Erik Schnetter
ca5180f7a2 Correct Blosc install on Darwin 2016-06-14 17:03:00 -04:00
Erik Schnetter
e6ec372926 Add packages c-blosc and hdf5-blosc 
c-blosc provides the Blosc compression filter, and hdf5-blosc provides a plugin for HDF5 to use that filter.
 2016-06-14 09:59:48 -04:00
Glenn Johnson
e226837d33 Fix flake8 error. 2016-06-13 23:04:26 -05:00
Glenn Johnson
8861c99333 New package - r-foreign 2016-06-13 22:50:07 -05:00
Glenn Johnson
5ba5ef6c46 Add list_url for older versions. 2016-06-13 17:50:27 -05:00
Glenn Johnson
94d0f21823 New package - r-xlsxjars 2016-06-13 17:50:06 -05:00
Glenn Johnson
4767185082 New package - r-xlsx 2016-06-13 17:48:59 -05:00
Glenn Johnson
5cd09af066 New package - r-XLConnect 2016-06-13 17:48:44 -05:00
Glenn Johnson
3c234a7d3b New package - r-XLConnectJars 2016-06-13 17:36:50 -05:00
Glenn Johnson
450b082daf Do not need to depend on jdk here because R itself does. 2016-06-13 17:35:35 -05:00
Glenn Johnson
427fa7fd0a New package - rJava 2016-06-13 17:26:01 -05:00
David Boehme
52160bff18 Use https for github 2016-06-13 11:47:28 -07:00
Glenn Johnson
d398ebe21f New package - r-RSQLite 2016-06-12 22:06:06 -05:00
Glenn Johnson
b96b32e9ec New package - r-RPostgreSQL 2016-06-12 22:05:45 -05:00
Glenn Johnson
77e8096a6f New package - r-RODBC 2016-06-12 22:05:26 -05:00
Glenn Johnson
bfb0985c38 New package - r-RMySQL 2016-06-12 22:05:10 -05:00
Glenn Johnson
a7a640bfb8 New package - rDBI 2016-06-12 22:04:37 -05:00
Glenn Johnson
b05a565648 New package - mariadb 2016-06-12 22:04:09 -05:00
Glenn Johnson
5d3965c7a6 New package - unixODBC 2016-06-12 22:03:24 -05:00
Glenn Johnson
7727f6fc7e New package - libaio 2016-06-12 22:02:46 -05:00
Glenn Johnson
4dcb15cf6d Ran through autopep8 and cleaned up. 2016-06-12 22:00:49 -05:00
Glenn Johnson
bdb9af63ed Add version 9.5.3 and add readline as a dependency. 2016-06-12 21:58:41 -05:00
Glenn Johnson
8ff7cbb9ce Run binutils/package.py through autopep8. 2016-06-12 21:57:03 -05:00
Glenn Johnson
1601cf1b14 Patch binutils 
This commit adds a patch to update symbol versions from linker scripts.
This is seen with libmysqlclient.so which has to maintain compatibility
across two versions. Only one can be the default.

https://sourceware.org/git/gitweb.cgi?p=binutils-gdb.git;a=commitdiff;h=544ddf9322b1b83982e5cb84a54d084ee7e718ea
 2016-06-12 21:46:11 -05:00
Kelly (KT) Thompson
31d2c38687 Update formatting to meet code style requirements. 2016-06-12 19:56:29 -06:00
Kelly (KT) Thompson
b89bcdff62 Make Boost an optional feature of Trilinos. 
I have been unable to build Boost with some toolset/platform combinations. The
users I support don't need the Boost features in Trilinos, so I have been
manually hacking trilinos/package.py to disable boost. I would like to propose
that these changes be added to the released version.

+ Add boost as a variant, default to true so there is no change to existing
  behavior.
+ Move the CMake configure options related to Boost into a conditional block
  that is triggered by "if '+boost' in spec".
 2016-06-12 19:48:45 -06:00
Tom Scogland
1b28991e0a Merge pull request #1026 from epfl-scitas/packages/lmod 
lmod : updated package and dependencies
 2016-06-12 17:01:41 -07:00
Glenn Johnson
59c9816dbf Make quotations in variables consistent. 2016-06-11 16:01:23 -05:00
Glenn Johnson
0e9f8bd38d Add list_url for old versions. 2016-06-11 15:53:28 -05:00
Erik Schnetter
953b65abcc Do not pass "/usr" or "/usr/local" as path to configure 2016-06-11 16:41:39 -04:00
Glenn Johnson
6c0ea77d1d Add list_url for older versions. 2016-06-11 15:36:43 -05:00
Adam J. Stewart
85502e34f9 CMake knows how to create PIC 2016-06-10 14:35:19 -05:00
Kelly (KT) Thompson
883f601bca Fix style issues. 2016-06-09 19:18:25 -06:00
Kelly (KT) Thompson
915115386a Package serf also depends on zlib. 
+ Add zlib as a required dependency.
+ Point scons build system to the spack provided zlib installation.
 2016-06-09 18:30:28 -06:00
Orion Poplawski
454acf58af Add additional blank line for flake8 2016-06-08 16:49:42 -06:00
Orion Poplawski
e3ca5e6676 Add patch to compile pcre with Intel 16.0.3 compiler 2016-06-08 16:23:04 -06:00
Adam J. Stewart
65896ff2ed Add Armadillo and SuperLU packages 2016-06-08 14:11:14 -05:00
James Riley Wynne III
4b9707f8ea Fixed flake8 formatting problems 2016-06-08 14:36:45 -04:00
James Riley Wynne III
42a10d5690 Fixes issue #438 2016-06-08 12:43:05 -04:00
Nicolas Richart
2d21693b9d Missing file to patch mumps 2016-06-08 17:09:13 +02:00
alalazo
564483936f qa : fixed flake8 issues 2016-06-08 16:33:49 +02:00
alalazo
4a61efe641 lmod : fixed issues with LUA_PATH during installation 2016-06-08 16:21:09 +02:00
alalazo
f4a39457de lmod : updated package and dependencies 2016-06-08 15:35:15 +02:00
Nicolas Richart
165411f4a5 bug fix in the +mpi case 2016-06-08 15:17:12 +02:00
Nicolas Richart
498c098d11 Cleaning flake warnings in mumps package 2016-06-08 14:57:54 +02:00
Nicolas Richart
e124c86a4f Corrected the shared libraries and tests in mumps package 2016-06-08 14:17:46 +02:00
Glenn Johnson
bb19dffb26 Fix flake8 error. 2016-06-07 23:40:12 -05:00
Glenn Johnson
ad0cfa41aa Fix flake8 errors 2016-06-07 23:37:49 -05:00
Glenn Johnson
738720a000 new package: r-devtools 
This PR brings in the R devtools package and it dependencies.
 2016-06-07 23:20:46 -05:00
Greg Lee
bb57b82794 flake8 fixes 2016-06-07 20:15:02 -07:00
Glenn Johnson
2262bc95f1 new package: r-packrat 
Manage the R packages your project depends on in an isolated, portable,
and reproducible way.
https://github.com/rstudio/packrat/
 2016-06-07 22:04:11 -05:00
Greg Lee
25b2f7b1d7 put older versions back + version-specific dwarfdump dir 2016-06-07 20:02:38 -07:00
Mayeul d'Avezac
0b5ce9e16a 💄 style points requested by flake8 2016-06-03 11:52:19 +01:00
Nicolas Richart
8b6035ab82 Making emacs dependent on internal packages 2016-06-03 00:24:00 +02:00
Todd Gamblin
3d2b25e45c Merge pull request #1014 from epfl-scitas/packages/mvapich2 
Changes to take into account slurm in version @2.1: of mvapich2
 2016-06-02 01:08:28 -07:00
Todd Gamblin
27bc49d8c8 Merge pull request #1001 from ashkan2200/develop 
Dealii, fixed issue with tests
 2016-06-02 01:01:29 -07:00
Todd Gamblin
b843b73bb5 Merge pull request #1005 from eschnett/eschnett/hdf5-update 
Update HDF5 to version 1.10.0-patch1
 2016-06-02 00:57:15 -07:00
Todd Gamblin
1fb4fa02e3 Merge pull request #1010 from epfl-scitas/packages/tetgen 
Adding a version to tetgen
 2016-06-02 00:54:09 -07:00
Nicolas Richart
53dcc39b72 removing useless selfs 2016-06-01 17:33:54 +02:00
Nicolas Richart
3ab8468e73 Correcting the flake8 warnings 2016-06-01 16:43:08 +02:00
Nicolas Richart
0451c8e55f Addapting the mvapich2@2.1: configure options for slurm 2016-06-01 15:58:00 +02:00
Nicolas Richart
d802144f39 Introduced a bug by correcting flake8 warnings 2016-06-01 03:31:29 +02:00
Nicolas Richart
5d4a0e4050 Corrections for flake8 2016-06-01 03:28:42 +02:00
Nicolas Richart
97bad2c1ac Corrections for flake8 2016-06-01 03:25:37 +02:00
Nicolas Richart
58052e6632 Adding package fenics 2016-06-01 03:20:56 +02:00
Nicolas Richart
cb673765c2 Adding a version to tetgen 2016-06-01 03:02:48 +02:00
Nicolas Richart
0df0677d5b Adding a variant to link against the spack libraries instead of the system ones 2016-06-01 03:00:03 +02:00
Nicolas Richart
9db8dc1895 Removing extra dependencies + minor fix according to remarks on #1002 2016-06-01 00:57:01 +02:00
Erik Schnetter
c03c689cb2 Update HDF5 to version 1.10.0-patch1 2016-05-31 12:18:17 -04:00
Adam J. Stewart
564e7f5e5b Don't build in parallel 2016-05-31 09:32:24 -05:00
Mayeul d'Avezac
29b85fbce0 Eigen can be installed with dependencies 2016-05-31 10:10:12 +01:00
Ali Dorostkar
6f96484f83 Spacing correction 
More spacing correction
 2016-05-31 09:58:29 +02:00
Ali Dorostkar
e82fb5b58f Fixed spacing 
Replaced tabs with spaces
 2016-05-31 08:44:46 +02:00
Todd Gamblin
f3f0122f11 Merge branch 'develop' into features/newarch 2016-05-30 13:54:53 -07:00
Ali Dorostkar
c4d5bd13c7 dealii, Added comment 
Added comment for why step-40 is done differently for dealii 8.4.0 and
later
 2016-05-30 18:11:34 +02:00
Nicolas Richart
fd345c8ef0 Merge branch 'packages/foam-extend' of github.com:epfl-scitas/spack into packages/foam-extend 2016-05-30 17:04:21 +02:00
Nicolas Richart
9f4e599232 Ignoring the flake8 error for a line too long 2016-05-30 16:58:06 +02:00
Nicolas Richart
08c8d1d1f7 limiting package to foam-extend to start 2016-05-30 16:49:25 +02:00
Nicolas Richart
4122ecbc80 First try at OpenFOAM-extend 2016-05-30 16:49:25 +02:00
Ali Dorostkar
4f591a6fe3 Step-40 test for 8.3.0 and earlier 
Integrated part of step-40 to be tested for earlier versions of dealii
 2016-05-30 16:42:24 +02:00
Nicolas Richart
fe79e43459 limiting package to foam-extend to start 2016-05-30 15:46:39 +02:00
Ali Dorostkar
d7e84fe07c dealii, test for specific version 
Specified that test case “step-40” is only to be run when using dealii
version 8.4.0 or later
 2016-05-30 14:03:27 +02:00
Glenn Johnson
66aaaa1751 Add a comment regarding the reason for the patch. 2016-05-29 15:30:09 -05:00
Ali Dorostkar
c2ac47235f additional versions for Dealii 
Included additional versions for Deal.II package.
 2016-05-29 13:22:19 +02:00
Glenn Johnson
c16d7c481c Get glib to compile with gcc-6.1 
This commit adds a patch to fix the case where gcc-6.1 emits an error
for string format literal that was a warning in previous versions of
gcc. The patch reference is
https://bugzilla.gnome.org/show_bug.cgi?id=761550

Also ran the package file through autopep8.
 2016-05-28 23:30:56 -05:00
Mario Melara
33e1dcc476 Adding mock package file for external module 2016-05-28 10:14:40 -07:00
Gregory Becker
9dad7c2ace re-merged mainline develop 2016-05-27 13:13:19 -07:00
Greg Lee
6dcdb50a3e Merge branch 'develop' of https://github.com/llnl/spack into develop 2016-05-27 12:44:57 -07:00
Greg Lee
0ae1298d25 updated libdwarf version and dwarfdump build 2016-05-27 12:43:13 -07:00
Adam J. Stewart
dd5a6914f1 Undo changes to flex 2016-05-27 12:56:43 -05:00
Todd Gamblin
f6a0cd1bf8 Merge pull request #973 from eschnett/eschnett/openmpi-verbs 
Auto-detect verbs location
 2016-05-27 11:01:44 -05:00
Todd Gamblin
7b063e3e6c Merge pull request #975 from adamjstewart/features/stream 
Add STREAM benchmark package
 2016-05-27 10:59:13 -05:00
Todd Gamblin
dc4ca26441 Merge pull request #992 from davydden/update/dealii 
Update/dealii
 2016-05-26 17:39:37 -05:00
Todd Gamblin
96f65479e7 Merge pull request #993 from xjrc/packages/metis 
Update Package : METIS/ParMETIS
 2016-05-26 17:37:33 -05:00
Denis Davydov
040c122719 dealii: formatting 2016-05-26 23:00:22 +02:00
Denis Davydov
0036483ded dealii: don't hardcode blas and mpi; minor fixes to dependencies 2016-05-26 18:07:27 +02:00
Todd Gamblin
76d42b5200 Merge pull request #982 from trws/rust 
Rust
 2016-05-25 15:15:51 -05:00
Joseph Ciurej
734fb459a4 Fixing a small bug with metis@4+shared installs on the Mac platform. 2016-05-25 12:27:52 -07:00
Joseph Ciurej
483ec0d762 Added preliminary improved testing code for METIS@:4. 2016-05-24 16:13:52 -07:00
Joseph Ciurej
c9ba73d931 Added staging support and improved error handling for METIS@:4 installs. 2016-05-24 16:05:29 -07:00
Joseph Ciurej
b5d0a38860 Fixed a few linking/testing bugs in the METIS@:4 install method. 2016-05-24 15:03:21 -07:00
Greg Lee
1bca69f272 updated launchmon url and version 2016-05-24 14:54:09 -07:00
Joseph Ciurej
064d3584c0 Updating 'metis' and 'parmetis' to conform to PEP8 standards. 2016-05-24 12:28:05 -07:00
Joseph Ciurej
0ef6843d85 Improved MPI path specification for ParMETIS using PR #893 features. 2016-05-24 12:28:05 -07:00
Joseph Ciurej
9c95ec0b29 Updated and added new versions to the METIS/ParMETIS packages. 
- Added a 'url_for_version' function to the METIS/ParMETIS packages.
- Added installation support for METIS@5.0.2 and ParMETIS@4.0.2.
- Changed the 'double' variant to 'real64' to make it more consistent
  with the 'idx64' variant naming.
- Removed an unnecessary dependency on gdb.
 2016-05-24 12:28:05 -07:00
Denis Davydov
c78349a3a4 octave: fix formatting 2016-05-23 15:08:10 +02:00
Denis Davydov
ce3146e91a octave: add missing dependencies and update to 4.0.2 2016-05-23 14:50:06 +02:00
Tom Scogland
00de72272d rust compiler/builder package, new llvm variants 2016-05-22 11:16:00 -07:00
Tom Scogland
425beb4d97 updates for rust-bindgen 2016-05-22 11:16:00 -07:00
Tom Scogland
404b7c7c4f initial rust support 2016-05-22 11:16:00 -07:00
Nicolas Richart
4c87ef915f First try at OpenFOAM-extend 2016-05-22 18:55:29 +02:00
Erik Schnetter
09eed08b9c Auto-detect verbs location 2016-05-20 16:24:48 -04:00
Todd Gamblin
d94972503a Merge pull request #964 from davydden/update/tbb 
tbb: add 4.4.4; raise InstallError when building 4.4.3 with GCC6.1
 2016-05-19 22:44:03 -07:00
Nicolas Richart
2e77cc635e missing @ in version definition 2016-05-20 00:51:58 +02:00
Nicolas Richart
a233ed2de7 changes scotch package to make he coverage test pass 2016-05-20 00:42:34 +02:00
Nicolas Richart
a51566ec6e changes to simplify the esmumps variant for version < 6.0.0 + typos corrections, according to the remarks on PR #979 2016-05-20 00:31:12 +02:00
Nicolas Richart
1bf306bbbd Adding +metis variant to scotch + minor changes 2016-05-19 17:26:44 +02:00
Gregory Becker
9f59c128be Partial merge of mainline develop 2016-05-18 15:13:40 -07:00
Tom Scogland
29635b7bbd initial docs for find and flake8 cleanup 2016-05-18 14:04:39 -07:00
Adam J. Stewart
434ff28af4 Add STREAM benchmark package 2016-05-18 15:14:21 -05:00
Todd Gamblin
d391670755 Merge pull request #966 from verolero86/develop 
Add option to disable VT support in openmpi package
 2016-05-18 08:36:23 -07:00
Todd Gamblin
78c46aab35 Merge pull request #969 from Rombur/boost 
Add boost 1.61.0
 2016-05-18 08:35:51 -07:00
Todd Gamblin
637da63506 Merge pull request #948 from davydden/bugfix/astyle 
astyle: fix filter command which failed on OSX with python 2.7.10
 2016-05-18 08:35:01 -07:00
Bruno Turcksin
bbbffe7423 Add boost 1.61.0 2016-05-18 08:51:22 -04:00
Denis Davydov
267666cd97 formatting 2016-05-18 08:35:47 +02:00
Greg Lee
582d01784a added newdtags variant, default to false (i.e., remove --enable-new-dtags) 2016-05-17 21:18:34 -07:00
Todd Gamblin
d592a1655f Merge pull request #961 from xjrc/features/flake8-improvements 
Enhancement Proposal: Exempt '@when' Functions from Style Redefinition Errors
 2016-05-17 17:00:49 -07:00
Todd Gamblin
502420ceff Merge branch 'features/cflags' into develop 
Conflicts:
	lib/spack/spack/cmd/find.py
	var/spack/repos/builtin/packages/ghostscript/package.py
 2016-05-17 16:44:54 -07:00
Denis Davydov
1a187e73ae tbb: add 4.4.4; raise InstallError when building 4.4.3 with GCC6.1 2016-05-17 22:57:32 +02:00