Commit graph

30441 commits

Author SHA1 Message Date
Annop Wongwathanarat
7a5bd8cac4
gromacs: enable linking with acfl FFT (#34494) 2022-12-13 09:32:42 -08:00
Harmen Stoppels
333da47dc7
Don't fetch to order mirrors (#34359)
When installing binary tarballs, Spack has to download from its
binary mirrors.

Sometimes Spack has cache available for these mirrors.

That cache helps to order mirrors to increase the likelihood of
getting a direct hit.

However, currently, when Spack can't find a spec in any local cache
of mirrors, it's very dumb:

- A while ago it used to query each mirror to see if it had a spec,
  and use that information to order the mirror again, only to go
  about and do exactly a part of what it just did: fetch the spec
  from that mirror confused
- Recently, it was changed to download a full index.json, which
  can be multiple dozens of MBs of data and may take a minute to
  process thanks to the blazing fast performance you get with
  Python.

In a typical use case of concretizing with reuse, the full index.json
is already available, and it likely that the local cache gives a perfect
mirror ordering on install. (There's typically no need to update any
caches).

However, in the use case of Gitlab CI, the build jobs don't have cache,
and it would be smart to just do direct fetches instead of all the
redundant work of (1) and/or (2).

Also, direct fetches from mirrors will soon be fast enough to
prefer these direct fetches over the excruciating slowness of
index.json files.
2022-12-13 17:07:11 +01:00
dependabot[bot]
8b68b4ae72
build(deps): bump actions/checkout from 3.1.0 to 3.2.0 (#34480)
Bumps [actions/checkout](https://github.com/actions/checkout) from 3.1.0 to 3.2.0.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](93ea575cb5...755da8c3cf)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-12-13 09:05:50 -07:00
Adam J. Stewart
40a3fdefa8
py-cartopy: add v0.21.1 (#34482) 2022-12-13 07:12:24 -07:00
Adam J. Stewart
a61474f2c1
libicd: macOS now supported (#34483) 2022-12-13 07:12:00 -07:00
Aidan Heerdegen
b95a75779b
Fix markdown links in rst files (#34488) 2022-12-13 14:11:38 +00:00
Harmen Stoppels
0ff6a1bd1c
spack/package.py: improve editor support for some +/- static props (#34319) 2022-12-13 13:55:32 +01:00
Massimiliano Culpo
f9cfc2f57e
scons: fix signature for install_args (#34481) 2022-12-13 12:21:44 +01:00
Adam J. Stewart
f4fb20e27e
py-shapely: add v2.0.0 (#34475) 2022-12-13 09:59:23 +01:00
Massimiliano Culpo
3ff5d49102
Be strict on the markers used in unit tests (#33884) 2022-12-13 09:21:57 +01:00
Erik Heeren
238d4f72f5
py-pyld: add with dependency (#34472)
* py-pyld: add with dependency

* py-pyld and py-frozendict: update copyright expiration

* [@spackbot] updating style on behalf of heerener
2022-12-12 20:15:43 -07:00
Matthias Wolf
c5bc469eeb
py-sh: new versions (#34458)
* py-sh: new versions

* style
2022-12-12 20:15:28 -07:00
Sam Grayson
b01e7dca9d
Update packages for running azure (#34403)
* Update packages for running azure

* Update py-msal-extensions

* Respond to comments
2022-12-12 21:10:50 -06:00
Jean Luca Bez
c62906f781
New python package: Drishti (#33316)
* include Drishti

* fix syntax

* Update var/spack/repos/builtin/packages/drishti/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

* Update var/spack/repos/builtin/packages/drishti/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-12 19:33:50 -07:00
Sam Grayson
94bac8d6dd
Add new package: micromamba (#34195)
* Add new packages

* wip

* wip

* wip

* wip

* wip

* wip

* wip

* wip

* style

* wip

* Respond to comments

* Respond to comments

* Spack style

* Remove linkage=full_static to pass package audit

* Spack style

* Moved tl-expected version
2022-12-12 14:00:41 -06:00
Manuela Kuhn
cd9c9b47e8
py-sphinxcontrib-devhelp: add 1.0.2 (#34462)
* py-sphinxcontrib-devhelp: add 1.0.2

* Update var/spack/repos/builtin/packages/py-sphinxcontrib-devhelp/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-12 13:57:06 -06:00
Manuela Kuhn
8560295529
py-sphinxcontrib-applehelp: add 1.0.2 (#34461)
* py-sphinxcontrib-applehelp: add 1.0.2

* Update var/spack/repos/builtin/packages/py-sphinxcontrib-applehelp/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-12 13:56:48 -06:00
Adam J. Stewart
fd248ad0b8
GEOS: add v3.10-3.11 (#34473) 2022-12-12 11:50:03 -08:00
renjithravindrankannath
0578ccc0e6
ROCm 5.3.0 updates (#33320)
* ROCm 5.3.0 updates
* New patches for 5.3.0 on hip and hsakmt
* Adding additional build arguments in hip and llvm
* RVS updates for 5.3.0 release
* New patches and rocm-tensile, rocprofiler-dev, roctracer-dev recipe updates for 5.3.0
* Reverting OPENMP fix from rocm-tensile
* Removing the patch to compile without git and adding witout it
* Install library in to lib directory instead of lib64 across all platform
* Setting lib install directory to lib
* Disable gallivm coroutine for libllvm15
* Update llvm-amdgpu prefix path in hip-config.cmake.in
  Removing libllvm15 from Mesa dependency removing
* hip-config.cmake.in update required from 5.2
* hip-config.cmake.in update required from 5.2 and above
* hip-config.cmake.in update required for all 5.2 release above
* Style check correction in hip update
* ginkgo: add missing include
* Patching hsa include path for rocm 5.3
* Restricting patch for llvm-15
* Style check error correction
* PIC flag required for the new test applications
* Passing -DCMAKE_POSITION_INDEPENDENT_CODE=ON in the cmake_args instead of setting -fPIC in CFLAGS

Co-authored-by: Cordell Bloor <Cordell.Bloor@amd.com>
2022-12-12 13:46:20 -06:00
Glenn Johnson
fcc2ab8b4b
julia: have recipe explicitly use Spack compiler wrapper (#34365) 2022-12-12 19:53:26 +01:00
Vanessasaurus
76511ac039
Automated deployment to update package flux-core 2022-12-12 (#34456) 2022-12-12 11:47:36 -07:00
Jim Edwards
e4547982b3
allow esmf to use parallelio without mpi (#34182)
* allow esmf to use parallelio without mpi
* add hash for 8.4.0
* spack no longer sets arch to cray
2022-12-12 09:50:41 -08:00
Manuela Kuhn
80722fbaa3
py-snowballstemmer: add 2.2.0 (#34459) 2022-12-12 10:23:55 -06:00
Wouter Deconinck
c2fa444344
geant4: rm preference for 10.7.3 now that 11.1.0 is out (#34445) 2022-12-12 09:05:47 -07:00
Stephen Sachs
088ece1219
[texinfo] @7.0: needs c-11 syntax (#34261)
gnulib/lib/malloca.c uses single value `static_assert()` only available in c-11
syntax. `gcc` seems to be fine, but `icc` needs extra flag.

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-12-12 16:52:26 +01:00
Veselin Dobrev
fcdd275564
MFEM: fix issue with cxxflags (#34435) 2022-12-12 16:52:00 +01:00
Mikael Simberg
b6d6a1ab2c
Build tests for fmt conditionally (#34424) 2022-12-12 16:49:05 +01:00
Robert Blake
7efcb5ae73
Fixes to the silo packages for 4.11. (#34275) 2022-12-12 07:39:24 -07:00
Mikael Simberg
06e6389258
stdexec: skip build phase (#34425)
Since it's a header-only library there's nothing to build. However, the
default targets include tests and examples and there's no option to turn
them off during configuration time.
2022-12-12 07:16:40 -07:00
Simon Flood
b7f0f7879d
foam-extend: add v4.1 (released Oct 2019) (#34398) 2022-12-12 07:16:17 -07:00
Bernhard Kaindl
f7cfbe2702
hdf5: "hdf5@1.13:" needs a depends_on "cmake@3.18:" for build. (#34447) 2022-12-12 15:12:55 +01:00
Wouter Deconinck
1466f8d602
geant4-data: depends_on g4emlow@7.9.1 when @10.6 (#34444)
Per https://geant4.web.cern.ch/node/1837 the correct dependency for 10.6 is on `g4emlow@7.9.1`, not on both `g4emlow@7.9` and `g4emlow@7.9.1`.

This is a minor cosmetic fix. The concretization for 10.6 works just fine here. But this removes the duplicate entry.
2022-12-12 07:11:42 -07:00
Glenn Johnson
9fdb36585f
Fix openblas build with intel compiler (#34432)
This PR patches the f_check script to detect the ifort compiler and
ensure that F_COMPILER is iset to INTEL. This problem was introduced with
openblas-0.3.21. Without this patch, the value of F_COMPILER falls back
to G77 and icc rather than ifort is used for the linking stage. That
results in the openblas library missing libifcore, which in turn means
many Fotran programs can not be compiled with ifort.
2022-12-12 14:27:54 +01:00
Filippo Spiga
1f0a9fdc11
Adding NVIDIA HPC SDK 22.11 (#33954) 2022-12-12 14:26:39 +01:00
Jen Herting
0baba62900
arrow: dependency fixes (#33666)
+python needs more dependencies
don't look for dependency spec when it's not there
2022-12-12 14:26:02 +01:00
iarspider
4a0e34eda8
Add checksum for py-prometheus-client 0.14.1 (#34259) 2022-12-12 13:32:02 +01:00
Luke Diorio-Toth
88f2f59d92
Added ARM/aarch64 conflict to Eddy/Rivas lab tools (#34190) 2022-12-12 13:26:57 +01:00
Bernhard Kaindl
c1d11975f5
intel-parallel-studio: package is only available for x86_64 (#34392) 2022-12-12 12:09:29 +01:00
Glenn Johnson
cca56291c6
libgit2: add pcre dependency for @0.99: (#34289) 2022-12-12 11:55:49 +01:00
dependabot[bot]
ef155c16f0
build(deps): bump actions/setup-python from 4.3.0 to 4.3.1 (#34413)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.3.0 to 4.3.1.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](13ae5bb136...2c3dd9e7e2)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-12-12 11:37:06 +01:00
Adam J. Stewart
0952d314bd
py-pytorch-lightning: add v1.8.4 (#34426) 2022-12-12 11:35:20 +01:00
Wileam Y. Phan
f29ac34558
nvhpc: add v22.11 (#34410) 2022-12-12 11:35:00 +01:00
snehring
47628521b9
delly2: add v1.1.6 (#34411) 2022-12-12 11:31:26 +01:00
Todd Gamblin
62da76cb5d
directives: depends_on should not admit anonymous specs (#34368)
Writing a long dependency like:

```python
     depends_on(
         "llvm"
         "targets=amdgpu,bpf,nvptx,webassembly"
         "version_suffix=jl +link_llvm_dylib ~internal_unwind"
     )
```

when it should be formatted like this:

```python
     depends_on(
         "llvm"
         " targets=amdgpu,bpf,nvptx,webassembly"
         " version_suffix=jl +link_llvm_dylib ~internal_unwind"
     )
```

can cause really subtle errors. Specifically, you'll get something like this in
the package sanity tests:

```
    AttributeError: 'NoneType' object has no attribute 'rpartition'
```

because Spack happily constructs a class that has a dependency with name `None`.

We can catch this earlier by banning anonymous dependency specs directly in
`depends_on()`.  This causes the package itself to fail to parse, and emits
a much better error message:

```
==> Error: Invalid dependency specification in package 'julia':
    llvmtargets=amdgpu,bpf,nvptx,webassemblyversion_suffix=jl +link_llvm_dylib ~internal_unwind
```
2022-12-12 11:24:28 +01:00
Brian Vanderwende
65c914fff7
netcdf-c: add libxml2 when +dap (#34178) 2022-12-12 11:04:38 +01:00
Mikael Simberg
dd7b2deb47
Only restrict CMake version in Umpire when examples and rocm are enabled (#32025)
* Only restrict CMake version in umpire when examples and rocm are enabled

* Add CMAKE_HIP_ARCHITECTURES to Umpire and lift cmake version restriction

Co-authored-by: Tom Scogland <scogland1@llnl.gov>
2022-12-12 10:55:37 +01:00
Adam J. Stewart
7d72aeb4fe
py-tensorboard-data-server: add Linux aarch64 support (#34437) 2022-12-12 10:40:48 +01:00
John W. Parent
43d97afd8b
Bump CMake version to 3.25.1 (#34336) 2022-12-12 10:35:27 +01:00
Robert Cohn
39f13853ba
intel-oneapi-* conflicts for non linux, x86 (#34441) 2022-12-12 09:23:14 +01:00
Sebastian Pipping
d65b9c559a
expat: Add latest release 2.5.0 with security fixes (#34453) 2022-12-12 00:08:44 -07:00