Commit graph

14643 commits

Author SHA1 Message Date
Jen Herting
4649a251e6
New package: py-lightgbm (#21649)
* [py-lightgbm] created template

* [py-lightgbm] added homepage and description

* [py-lightgbm] added dependencies

* [py-lightgbm] build requires cmake

* [py-lightgbm] added mpi variant

* [py-lightgbm] removed fixmes

* [py-lightgbm] removed more fixmes
2021-02-12 13:34:08 -06:00
ketsubouchi
7add9de2e5
neartree: new package at v3.1 (#21534) 2021-02-12 19:00:54 +01:00
ketsubouchi
1e7fe89e1d
cvector: new package at v1.0.3 (#21533) 2021-02-12 17:07:25 +01:00
shanedsnyder
ad0ba8ce68
darshan-util" add "shared" variant (#21640) 2021-02-12 17:06:26 +01:00
Olivier Cessenat
ca7d1c29bc
ocamlbuild: new package (#21559) 2021-02-12 07:42:43 -06:00
iarspider
5d9c17d2bf
popt: depend on virtual iconv package (#21645) 2021-02-12 10:58:20 +00:00
AMD Toolchain Support
b53bf7cefd
xpmem: Added RHEL 8.3 support (#21563) 2021-02-12 11:01:55 +01:00
Cyrus Harrison
13852986a4
conduit: add v0.7.1 (#21639) 2021-02-12 10:35:14 +01:00
Ryan S. Elliott
f92580240e
Add support for KIM package in LAMMPS (#21638) 2021-02-11 19:10:45 -07:00
Tom Epperly
58b9c6dadd
Fix mumps compilation with gcc@10 (i.e., gfortran) (#21631)
* add new flag when compiling mumps with %gcc@10.

* Fix style

* Try to fix formatting

* Use flag_handler approach suggested by @michaelkuhn
	in the PR review.

* Delete former approach

* Another style issue

* Add another space

* More fixes
2021-02-12 01:14:09 +00:00
Daryl W. Grunau
0724467ad2
caliper: version upgrade to 2.5.0 (#21606)
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2021-02-11 20:34:22 +01:00
Dr. Christian Tacke
437d92155d
mesa18: Do not deprecate for now (#21627)
We still need mesa18 for some of our builds.
Those builds require python@2, normal mesa only works with
python@3.

* Remove the deprecation tag
* Add myself as a maintainer: I volunteer to help with this
  package for the time being.
* There is only one version, no need to prefer it.
2021-02-11 19:12:38 +00:00
Jen Herting
0dcb0d885f
[py-py4j] added version 0.10.9 (#21625) 2021-02-11 18:16:38 +00:00
Jen Herting
f7a05e0c61
[py-pyspark] new version and limited python for old versions (#21602)
* fixed install with ver 3 and python 3.0

* replaced @3 with @2.999

* [py-pyspark] added version requirements for py-py4j

* [py-pyspark] all versions require at least version 2.7 of python

* [py-pyspark] fixed comma syntax

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-02-11 11:16:29 -06:00
vvolkl
3d6e9e172d
genfit: set the ROOT prefix when building genfit (#21589)
Co-authored-by: lintao <lintao51@gmail.com>
2021-02-11 17:03:20 +01:00
Harmen Stoppels
f255c3eb76
libxc: add v5.1.0 (#21593) 2021-02-11 17:01:21 +01:00
Harmen Stoppels
882b8f9d42
spglib: add versions up to v1.16.1 (#21624) 2021-02-11 15:58:15 +00:00
Michael Kuhn
91d2c4f7db
meson: add 0.56.2 (#21608) 2021-02-11 16:46:01 +01:00
Erik Schnetter
7f003a77dd
nsimd: add v2.1 (#21623)
Updated variants and conflicts accordingly
2021-02-11 15:41:46 +00:00
Michael Kuhn
3268cf4b96
libfyaml: new package (#21604) 2021-02-11 16:41:16 +01:00
Michael Kuhn
ef5b15be40
libcyaml: new package (#21598) 2021-02-11 16:40:28 +01:00
Michael Kuhn
da46da1c2a
libyaml: add 0.2.5 (#21597) 2021-02-11 16:40:06 +01:00
Chuck Atkins
a57598defe
doxygen: fix gcc getting stuck in an infinite loop (#21614) 2021-02-11 16:35:51 +01:00
Michael Kuhn
e2084ea6fd
glib: add 2.66.6 (#21605) 2021-02-11 16:27:57 +01:00
M. Eric Irrgang
dea9334189
Apply compiler filters to GROMACS installation. (#21621)
The GROMACS package embeds references to its build tool chain.
Use the Spack utilities to make sure these references are correct
outside of the isolated Spack build environment.
2021-02-11 14:52:32 +00:00
victorusu
fd8eac7052
Add sanity checks to reframe recipe (#21622) 2021-02-11 15:35:57 +01:00
victorusu
2fbc8caf86
pygelf: add v0.4.0 (#21620) 2021-02-11 15:23:55 +01:00
M. Eric Irrgang
944cb5dec6
Update GROMACS package (#21617)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-02-11 15:16:27 +01:00
Michael Kuhn
fc00944900
meson: remove cmake dependency (#21607)
cmake was added as a runtime dependency to meson in #20449. This
introduces an unnecessary implicit cmake dependency, which increases
build time for meson considerably. cmake is only one of many methods for
finding dependencies (pkg-config, qmake etc.), which are also not
runtime dependencies of meson. Add cmake as a build dependency to mesa
instead.
2021-02-10 23:46:52 -05:00
Axel Huebl
48af2ac8f9
adios2: Add 2.7.1 release (#21584)
Add the latest release of ADIOS2.
2021-02-10 23:44:42 -05:00
Jen Herting
5828a2cd31
[py-chalice] py-typing causes issues with python >= 3.5 (#21202)
* [py-chalice] py-typing causes issues with python >= 3.5

* [py-chalice] changed upperbound on typing
2021-02-10 21:31:02 +00:00
eugeneswalker
e15a3438a8
ascent: add version v0.6.0 (#21573) 2021-02-10 10:14:16 -08:00
a-saitoh-fj
24dd5d12a5
py-llvmlite: Changing build options when using the FUJITSU compiler (#21585) 2021-02-10 09:58:10 -06:00
vvolkl
08972014f8
[py-uproot4] add new versions (#21588) 2021-02-10 09:57:10 -06:00
a-saitoh-fj
bd836540f2
New package: py-dask-sphinx-theme (#21582) 2021-02-10 10:22:03 +01:00
a-saitoh-fj
cf9a7bc7f6
pandoc modified:package.py (#21581) 2021-02-10 10:20:47 +01:00
h-denpo
7d48bbfd3a
raxml-ng: Fixed typo: (#21580) 2021-02-10 10:17:28 +01:00
Matt Schramm
175d614bc6
Update package.py (#21577) 2021-02-10 10:16:22 +01:00
Shintaro Iwasaki
ca6ec59a86
sollve: deprecate the sollve package (#21578) 2021-02-10 01:49:20 +00:00
Jen Herting
a938cc512b
New package: py-moviepy (#20751)
* [py-moviepy] created template

* [py-moviepy] added dependencies

* [py-moviepy] removed fixmes, added homepage and description

* [py-moviepy] updated to pypi and updated checksum

* [py-moviepy] added setuptools dependency

* [py-moviepy] more specific version limit

* [py-moviepy] added checksum for version 1.0.1

* [py-moviepy] numpy restriction not nesessary here
2021-02-09 23:18:51 +00:00
kean-smullen-nnl
32056da93b
New Package: py-xgboost (#21470)
* new python package py-xgboost added

* py-xgboost spack style applied

* py-xgboost: Addressing PR #21470 comments. Added variant descriptions and fixed scikit-learn when clause
2021-02-09 23:12:20 +00:00
Satish Balay
42e8a64660
xsdk: update petsc4py, strumpack dependencies (#21569) 2021-02-10 00:10:09 +01:00
Adam J. Stewart
d580ac302d
3DTK: add new package (#20931)
* 3DTK: add new package

* Add missing opencv variants

Co-authored-by: Michael Kuhn <michael@ikkoku.de>

* Fix cmake version req, add eigen dep

* Prefer trunk version

* Tell 3dtk where to find eigen

* Fix installation

* Fix installation

Co-authored-by: Michael Kuhn <michael@ikkoku.de>
2021-02-09 16:45:41 -06:00
Ethan Stam
865d38afa7
ParaView, LLVM: add -shared-intel to solve intel linking failures (#18195) 2021-02-09 23:26:49 +01:00
Desmond Orton
2697c73097
New Package r-reproducible (#21434) 2021-02-09 14:11:14 -08:00
Glenn Johnson
d01edbb48e
Fix groff build with long interpeter line (#21549)
This PR fixes the case where groff fails to build if the spack install
path is really long. There are a couple of perl scripts that get built,
and used, during the build phase that will fail when the perl
interpreter line is too long. Filtering the lines will not work because
the files don not exist after the configure phase and patching after the
build phase is too late.  This PR runs the scripts explicitly with the
spack perl via the $(PERL) variable in the call to the script.
2021-02-09 13:54:51 -08:00
Glenn Johnson
f7a9fbc688
Update the Spack R BioConductor packages to Bioconductor-3.12 (#21575) 2021-02-09 15:35:30 -06:00
takanori-ihara
fe863b68b2
biobambam2: Add test method and test scripts. (#21504)
Co-Authored-By: Tamara Dahlgren <dahlgren1@llnl.gov>
2021-02-09 12:33:55 -08:00
Jordan Ogas
02a4abadfa
add charliecloud 0.22 (#21574) 2021-02-09 12:15:03 -08:00
Dr. Christian Tacke
11711fcbe5
root: 6.22.04 works with xrootd 5 (#21572)
ROOT version 6.22.04 has been ported to support xrootd 5.
So let's support that.

See: https://github.com/root-project/root/commit/a33b156e3bf809343eda08150666154a
2021-02-09 11:33:14 -08:00