Commit graph

35996 commits

Author SHA1 Message Date
Adam J. Stewart
7723bd28ed
Revert "package/npm update (#43692)" (#43884)
This reverts commit 03a074ebe7.
2024-04-27 08:58:12 -06:00
Harmen Stoppels
43f3a35150
gcc: generate spec file and fix external libc default paths after install from cache (#43839)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-04-27 08:49:20 -06:00
Jonathon Anderson
ae9f2d4d40
containers: Add Fedora 40, 39 (#43847) 2024-04-26 20:02:04 -05:00
Huston Rogers
5a3814ff15
Miniconda3: Added Versions: 24.3.0, 24.1.2, 23.11.0, 23.9.0, 23.5.2, 23.5.1, 23.5.0, 23.3.1, 23.1.0 (#43868)
* Added Versions of miniconda3: 24.3.0, 24.1.2, 23.11.0, 23.9.0, 23.5.2, 23.5.1, 23.5.0, 23.3.1, 23.1.0

* fixed style

---------

Co-authored-by: James H. Rogers <jhrogers@spear.hpc.msstate.edu>
2024-04-26 18:58:58 -06:00
Sakib Rahman
946c539dbd
osg-ca-certs: new version osg 1.119 and igtf 1.128 (#43871)
* Update package.py to osg 1.119 and igtf 1.128

* Remove unnecessary white space

* Add missing comma

* change url to use git and use commit hash from repository instead of ssh256sum of tar.gz

* [@spackbot] updating style on behalf of rahmans1

---------

Co-authored-by: rahmans1 <rahmans1@users.noreply.github.com>
2024-04-26 18:39:12 -06:00
Robert Cohn
0037462f9e
[SOS] update license (#43864)
Auto-generated license was wrong
2024-04-26 18:45:29 +02:00
Massimiliano Culpo
e5edac4d0c
ASP-based solver: update os compatibility for macOS (#43862) 2024-04-26 18:34:46 +02:00
Jeff Hammond
3e1474dbbb
ARMCI-MPI: add new package (#43813)
Signed-off-by: Jeff Hammond <jeff.science@gmail.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-04-26 16:35:33 +02:00
Abhishek Yenpure
0f502bb6c3
libcatalyst: add v2.0.0 (#43804) 2024-04-26 16:27:46 +02:00
Robert Cohn
1eecbd3208
[intel-oneap-*] no redistribution (#43826) 2024-04-26 12:03:39 +00:00
Jack Morrison
6e92b9180c
Add tests-sos package + Variants to sos package (#43830)
* * Add initial tests-sos package
* Remove failing call of missing setup_compiler_environment from sos
  package
* Add several variants for sos package

* [@spackbot] updating style on behalf of jack-morrison
2024-04-26 07:26:21 -04:00
Massimiliano Culpo
ac9012da0c
spack audit externals: allow selecting platforms and checking extra attributes (#43782) 2024-04-26 12:47:17 +02:00
Mosè Giordano
e3cb4f09f0
julia: add v1.10.2 (#41151)
* julia: add v1.10.2

* julia: add patch to remove suite-sparse cuda stub files

* julia: use permalinks for patches
2024-04-26 12:44:54 +02:00
Harmen Stoppels
2e8600bb71
gcc: simplify specs file, make binutils locatable (#43861) 2024-04-26 01:30:51 -06:00
Harmen Stoppels
d946c37cbb
ldflags=* are compiler flags, not linker flags (#43820)
We run `extend spack_flags_list SPACK_LDFLAGS` for `$mode in ld|ccld`.

That's problematic, cause `ccld` needs `-Wl,--flag` whereas `ld` needs
`--flag` directly. Only `-L` and `-l` are common to compiler & linker.

In all build systems `LDFLAGS` is for the compiler not the linker, cause
any linker flag `-x` can be passed as a compiler flag `-Wl,-x`, and there
are many compiler flags that affect the linker invocation, like `-fopenmp`,
`-fuse-ld=`, `-fsanitize=` etc.

So don't pass `LDFLAGS` to the linker directly.

This way users can set `ldflags: -Wl,--allow-shlib-undefined` in compilers.yaml
to work around an issue where the linker tries to resolve the `libcuda.so.1`
stub lib which cannot be located by design in `cuda`.
2024-04-26 09:19:03 +02:00
Harmen Stoppels
47a9f0bdf7
llvm: use --gcc_install_dir in config files (#43795) 2024-04-26 09:01:02 +02:00
Alex Richert
2bf900a893
Update package.py (#43836) 2024-04-25 16:00:43 -07:00
Andrey Perestoronin
99bba0b1ce
Add intel-oneapi-mpi 2021.12.1 patch package (#43850)
* Add intel-oneapi-mpi package

* Fix style
2024-04-25 13:38:47 -06:00
Juan Miguel Carceller
a8506f9022
glew package: add ld flags when compiling with ^apple-gl (#43429) 2024-04-25 11:18:00 -07:00
Harmen Stoppels
4a40a76291
build_environment.py: expand SPACK_MANAGED_DIRS with realpath (#43844) 2024-04-25 13:33:50 +02:00
downloadico
fe9ddf22fc
spatialdata: add spatialdata package to spack (#43500) 2024-04-25 04:18:08 -07:00
Adam J. Stewart
1cae1299eb
CI: remove ML ROCm stack (#43825) 2024-04-25 12:56:59 +02:00
Adam J. Stewart
8b106416c0
py-lightning: add v2.2.3 (#43824) 2024-04-25 12:03:01 +02:00
jalcaraz
e2088b599e
[TAU Package] Updates for rocm (#43790)
* Updates for rocm

Updated for rocm@6
Added conflict between rocprofiler and roctracer.
Request either +rocprofiler or +roctracer when +rocm. In this case, it automatically builds for one, instead of displaying the message. 
Request +rocm when using either +rocprofiler or +roctracer. In this case, it automatically builds with +rocm, instead of displaying the message.

Disabled the tests. Will update them with the new test method.

* [@spackbot] updating style on behalf of jordialcaraz

---------

Co-authored-by: jordialcaraz <jordialcaraz@users.noreply.github.com>
2024-04-24 16:35:41 -07:00
Ken Raffenetti
56446685ca
mpich: add 4.2.0 release (#42687) 2024-04-24 12:33:59 -07:00
Teo
47a8d875c8
update halide versions; sync llvm (#43793) 2024-04-24 12:27:42 -07:00
Adam J. Stewart
56b2d250c1
py-keras: add v3.3.1-2 (#43798) 2024-04-24 12:23:34 -07:00
David Boehme
abbd09b4b2
Add Caliper v2.11 (#43802) 2024-04-24 12:21:56 -07:00
Rémi Lacroix
9e5fdc6614
dotnet-core-sdk: Add versions 7.0.18 and 8.0.4 (#43814) 2024-04-24 12:19:33 -07:00
Harmen Stoppels
1224a3e8cf
clang.py: detect flang-new (#43815)
If a flang-new exists, which is rather unlikely, it probably means the
user wants it as a fortran compiler.
2024-04-24 19:11:02 +02:00
Jake Koester
6c3218920f
Trilinos: update kokkos dependency (#43785)
* fix so trilinos@master uses correct kokkos (@4.3.00)

* Update var/spack/repos/builtin/packages/trilinos/package.py
2024-04-24 10:42:08 -06:00
Peter Scheibel
02cc3ea005
Add new redistribute() directive (#20185)
Some packages can't be redistributed in source or binary form. We need an explicit way to say that in a package.

This adds a `redistribute()` directive so that package authors can write, e.g.:

```python
    redistribute(source=False, binary=False)
```

You can also do this conditionally with `when=`, as with other directives, e.g.:

```python
    # 12.0 and higher are proprietary
    redistribute(source=False, binary=False, when="@12.0:")

    # can't redistribute when we depend on some proprietary dependency
    redistribute(source=False, binary=False, when="^proprietary-dependency")
```


To prevent Spack from adding either their sources or binaries to public mirrors and build caches. You can still unconditionally add things *if* you run either:
* `spack mirror create --private`
* `spack buildcache push --private`

But the default behavior for build caches is not to include non-redistributable packages in either mirrors or build caches.  We have previously done this manually for our public buildcache, but with this we can start maintaining redistributability directly in packages.

Caveats: currently the default for `redistribute()` is `True` for both `source` and `binary`, and you can only set either of them to `False` via this directive.

- [x] add `redistribute()` directive
- [x] add `redistribute_source` and `redistribute_binary` class methods to `PackageBase`
- [x] add `--private` option to `spack mirror`
- [x] add `--private` option to `spack buildcache push`
- [x] test exclusion of packages from source mirror (both as a root and as a dependency)
- [x] test exclusion of packages from binary mirror (both as a root and as a dependency)
2024-04-24 09:41:03 -07:00
John W. Parent
641ab95a31
Revert "Windows: add win-sdk/wgl externals during bootstrapping (#43459)" (#43819)
This reverts commit 9e2558bd56.
2024-04-24 18:24:28 +02:00
Adam J. Stewart
e8b76c27e4
py-matplotlib: drop test dep (#43765)
test dependencies constrains build / link type deps, so avoid that
2024-04-24 18:03:13 +02:00
Massimiliano Culpo
0dbe4d54b6
Tune default compiler preferences (#43805)
Add `%oneapi`, remove compilers that have been discontinued upstream
2024-04-24 18:00:40 +02:00
Harmen Stoppels
1eb6977049
rust: use system libs (#43797) 2024-04-24 09:46:11 -06:00
Harmen Stoppels
3f1cfdb7d7
libc: from current python process (#43787)
If there's no compiler we currently don't have any external libc for the solver.

This commit adds a fallback on libc from the current Python process, which works if it is dynamically linked.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-04-24 05:10:48 -06:00
Massimiliano Culpo
d438d7993d
nf-*-cli: fix typo in conditional (#43806)
The default runner changed on GitHub for macOS, and that
revealed a bug in a package when running audits
2024-04-24 11:30:35 +02:00
Todd Gamblin
aa0825d642
Refactor to improve spec format speed (#43712)
When looking at where we spend our time in solver setup, I noticed a fair bit of time is spent
in `Spec.format()`, and `Spec.format()` is a pretty old, slow, convoluted method.

This PR does a number of things:
- [x] Consolidate most of what was being done manually with a character loop and several
      regexes into a single regex.
- [x] Precompile regexes where we keep them 
- [x] Remove the `transform=` argument to `Spec.format()` which was only used in one 
      place in the code (modules) to uppercase env var names, but added a lot of complexity
- [x] Avoid escaping and colorizing specs unless necessary
- [x] Refactor a lot of the colorization logic to avoid unnecessary object construction
- [x] Add type hints and remove some spots in the code where we were using nonexistent
      arguments to `format()`.
- [x] Add trivial cases to `__str__` in `VariantMap` and `VersionList` to avoid sorting
- [x] Avoid calling `isinstance()` in the main loop of `Spec.format()`
- [x] Don't bother constructing a `string` representation for the result of `_prev_version`
      as it is only used for comparisons.

In my timings (on all the specs formatted in a solve of `hdf5`), this is over 2.67x faster than the 
original `format()`, and it seems to reduce setup time by around a second (for `hdf5`).
2024-04-23 10:52:15 -07:00
Greg Becker
978c20f35a
concretizer: update reuse: default to True (#41302) 2024-04-23 17:42:14 +02:00
Marc T. Henry de Frahan
d535124500
Update amr-wind package with versions (#43728) 2024-04-23 05:07:42 -06:00
Harmen Stoppels
01f61a2eba
Remove import distro from packages and docs (#43772) 2024-04-23 12:47:33 +02:00
Massimiliano Culpo
7d5e27d5e8
Do not detect a compiler without a C compiler (#43778) 2024-04-23 12:20:33 +02:00
Harmen Stoppels
d210425eef
nettle: remove openssl dep (#43770) 2024-04-23 07:44:15 +02:00
Nathalie Furmento
6be07da201
starpu: fix release 1.4.4 (#43730) 2024-04-22 15:56:23 -07:00
Filippo Spiga
02b38716bf
Adding UCX 1.16.0 (#43743)
* Adding UCX 1.16.0
* Fixed hash
2024-04-22 15:52:20 -07:00
Adam J. Stewart
d7bc624c61
Tags: add more build tools (#43766)
* Tags: add more build tools
* py-pythran: add maintainer
2024-04-22 15:34:38 -07:00
Adam J. Stewart
b7cecc9726
py-scikit-image: add v0.23 (#43767) 2024-04-22 15:32:55 -07:00
Adam J. Stewart
393a2f562b
py-keras: add v3.3.0 (#43783) 2024-04-22 15:04:06 -07:00
Massimiliano Culpo
682fcec0b2
zig: add v0.12.0 (#43774) 2024-04-22 15:02:45 -07:00