Commit graph

6257 commits

Author SHA1 Message Date
Hans Pabst
4e13641db8 LIBXSMM 1.8.1 (#4235)
* Included LIBXSMM 1.8 into the list of available versions.

* LIBXSMM 1.8.1
2017-05-12 13:51:43 -05:00
Adam J. Stewart
c612781f6f Convert pixman to AutotoolsPackage (#4231) 2017-05-12 11:29:16 -05:00
Adam J. Stewart
1a6b4afe7f Add helpful error message for uncompressed downloads (#4205) 2017-05-12 09:52:01 -05:00
Jean-Paul Pelteret
d972ba7fbc Add SymEngine release 0.3.0 (#4227) 2017-05-12 07:49:06 -05:00
Milton Woods
2413f1ec3e Python cdat-lite package (#4208)
* py-cdat-lite: a python package for managing and analysing climate science data

* py-cdat-lite: depends on py-numpy

* py-cdat-lite: flake8 compliance

* py-cdat-lite: provide a generic URL where multiple versions are listed

* py-cdat-lite: restrict python versions; python required at run-time

* py-cdat-lite: use URL under pypi.io for consistency with other packages

* py-cdat-lite: add run-time dependency on py-numpy
2017-05-12 07:46:58 -05:00
Michael Kuhn
e7016b250f Add pdt support to scorep (#4198)
Add pdt dependency to scorep
2017-05-12 07:37:18 -05:00
Adam J. Stewart
5719cfb2f7 Download udunits from FTP server (#4218) 2017-05-11 19:07:12 -05:00
Adam J. Stewart
34cfd2483a Add latest version of eigen (#4224) 2017-05-11 19:06:11 -05:00
Adam J. Stewart
e7973dd290 Fix typo in PythonPackage documentation (#4221) 2017-05-11 19:05:02 -05:00
Adam J. Stewart
70939cf147 Fix metis list_url (#4222) 2017-05-11 19:04:38 -05:00
Stephen McDowell
d01f01c77f Flann package (#3966)
* Initial attempt at flann packaging.

Python2 somehow works. Python3 does not.  Still debugging their
obscure setup.py configuration.

* Flann good enough. Python3 broken but close.

Flake8 checks in place.  Unsure about CMAKE_BUILD_TYPE and default
spack behavior.

* spack uses RelWithDebInfo as default build type.

* builds py2/3, but direct site-packages install

* prefix working, empty python install dir

* flann package +python installs correctly

* str format {0} instead of {}

* potential doctest fix

* consistency of build env with PythonPackage

* fix python again, test deptype todo, build type

* potentially enable matlab, untested
2017-05-11 19:03:23 -05:00
Adam J. Stewart
4cc2d33bcf Force suite-sparse to use Spack's compiler wrappers (#4220) 2017-05-11 18:07:28 -05:00
Adam J. Stewart
9e65f2347c Add patch to fix missing MODULESHOME in profile (#4214) 2017-05-11 14:50:29 -05:00
Massimiliano Culpo
f8b3eff01c filesystem.py: fixed bug introduced in #3367 (scrambled order in output) (#4156)
PR #3367 inadvertently changed the semantics of _find_recursive and
_find_non_recursive so that the returned list are not ordered as the
input search list. This commit restores the original semantic, and adds
tests to verify it.
2017-05-11 10:29:08 -07:00
Adam J. Stewart
23ee792dcf Update NAG checksum, add F77 and FC (#4196) 2017-05-11 11:30:55 -05:00
Howard Pritchard
64dfc8bda6 Open MPI: add 2.1.1 to the list (#4204)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-05-10 16:08:52 -05:00
Michael Kuhn
a01be73185 Add nemesistcpib fabrics variant (#4197) 2017-05-10 14:37:01 -05:00
Suzanne Parete-Koon
e1d8cc86f0 updating git (#4200) 2017-05-10 14:36:10 -05:00
Matthew Thompson
604f65f395 Edits to get setup-env.csh working better (#4044)
* Edits to get setup-env.csh working better.

Autosets the sys_type a la setup-env.sh

* More stealing from bash setup script for module roots

* Add error message if SPACK_ROOT isn't set

* Remove _sp_lmod_root per Adam J Stewart
2017-05-10 10:18:45 -05:00
Erik Schnetter
e453865859 cosmomc: Enable Python bindings (#4169)
* cosmomc: Enable Python bindings

* cosmomc: Make python dependency optional
2017-05-10 10:10:53 -05:00
Erik Schnetter
28c7d15df8 hdf5: Correct spelling (#4172)
* hdf5: Correct spelling

* hdf5: avoid trailing spaces
2017-05-10 10:10:31 -05:00
Erik Schnetter
c422b33d77 highfive: New package; this is a C++ wrapper for the HDF5 library (#4173)
* highfive: New package; this is a C++ wrapper for the HDF5 library

The C++ wrapper that is shipped with the HDF5 library has several shortcomings. The highfive library seems to avoid these.

* highfive: Make MPI variant default to true
2017-05-10 09:47:56 -05:00
Adam J. Stewart
94c1651bce Add latest version of PGI compilers (#4186)
* Add latest version of PGI compilers

* Prepend, don't overwrite
2017-05-10 08:16:39 -05:00
Stephen McDowell
61ad369186 py-flask version updates, remote switch (#4166)
* version updates, remote switch

* trim versions to original and most recent

* proper url discovered and tested
2017-05-10 08:15:47 -05:00
Stephen McDowell
c0ceece9cc enable cuda support for suite-sparse (#4163)
* enable cuda support for suite-sparse

* do not use spec.satisfies

* cuda restructure, give clearer comment of why

* str format compatibility

* flake8 checks
2017-05-10 08:13:14 -05:00
Adam J. Stewart
b5eb298f3e Add a new package for ExtUtils::MakeMaker (#4179) 2017-05-09 18:52:08 -05:00
Adam J. Stewart
36db5ba9d8 Fix newline character in GCC package (#4181)
* Fix newline character in GCC package

* Remove the newline completely
2017-05-09 18:51:40 -05:00
Mark C. Miller
64fb2f22b4 Adding FASTMath uber package and missing FASTMath packages (#4120)
* adding 0.5.1 and variant for uint8 bit stream word type

* Revisions as per davydden

* fixing style (flake8) issues

* - switched to derive from MakefilePackage
- fixed typo in variant check
- Confirmed installs correctly with bswtuint8 variant

* added build method; changed zfp_incdir to incdir

* * Adding uber fastmath package to support 'spack install fastmath'
* Adding dims variant boxlib to control compile-time spatial dimension count
* Explicitly disabling many parts of moab to get lib to build. Don't need tools yet.
* Add logic to spack/setup-env to not refer to $SYS_TYPE if its not defined.

* adding mesquite package

* * Added Chombo (still working on Fortran name mangling)
* Made mesquite depend on mpi
* Fixed use of boxlib's dims numerical variant

* adding PUMI

* flake8 compliance

* adding phasta

* fixing flake8 issues

* undue $SYS_TYPE protection change

* fixing install step for fastmath uber package; resolve issues requested by adamjstewart in PR

* revisions as per adamjstewart

* re-enabling trilinos and phasta dependencies

* all changes requested modulu values= and assert statement

* fixing cmake_args usage in pumi; fixing lib installs for chombo

* first pass at numerical variant

* fixing dims variant as per @adamjstewart

* fixing func/var name collision

* fixing means of disabling -Werror

* fix name collision for cmake_args var/func

* fixing chombo homepage/url; make FASTMath use chombo#3.2; remove extraneous comment about boxlib dim

* remove dummy fastmath package; switch to @BarrySmith soln for install of dummy bundle

* fix flake8 import os issue

* remove extraneous comment

* adding url for fastmath scidac site

* final fixes as per @adamjstewart

* adding 1 dims option for boxlib

* switching make(all) to gmake(all)
2017-05-09 18:26:57 -05:00
Adam J. Stewart
a5fd658986 Add latest versions of Intel compiler (#4184) 2017-05-09 18:15:14 -05:00
George Hartzell
ba32f0d3a2 Make openmpi package defn more robust (#4183)
Make openmpi handle bad ibv_devices return statuses without bailing out completely.

See #4162 for background.
2017-05-09 18:00:08 -05:00
Erik Schnetter
692a100caa ncurses: Always build tools (#4174)
Otherwise, the install can fail if the system-provided `tic` binary is too old.
2017-05-09 17:59:46 -05:00
Erik Schnetter
caabcdc8b4 simulationio: Declare dependency on the HDF5 C++ bindings (#4177) 2017-05-09 17:59:21 -05:00
Erik Schnetter
44440d023d qthreads: Convert to AutoTools package (#4176) 2017-05-09 17:58:44 -05:00
Erik Schnetter
0e02f99323 funhpc: Update to version 1.3 (#4170)
Also use a Spack-provided GoogleTest.
2017-05-09 16:19:06 -05:00
Erik Schnetter
68034e4d42 gdbm: Declare readline dependency (#4171) 2017-05-09 16:18:17 -05:00
Gregory Lee
cbcf0f4674 Merge pull request #4165 from epfl-scitas/packages/cp2k_intel_stack_17
cp2k: fixed compilation issues for intel stack
2017-05-09 13:44:53 -07:00
Adam J. Stewart
e8f493ee7b Travis version of pip is too old (#4180)
* Travis version of pip is too old

* Also need to upgrade setuptools
2017-05-09 13:59:59 -05:00
Massimiliano Culpo
306f158c73 cp2k: fixed compilation issues for intel stack
Added DFLAGS to the `make.inc` file being written.
These macros are also added to the language specific variables
like CFLAGS, CXXFLAGS and FCFLAGS. Changed `spec.satisfies('foo')`
with `'foo' in spec` in `intel-mkl`, see #4135. Added a basic
build interface to `intel-mpi`.
2017-05-09 18:46:42 +02:00
Adam J. Stewart
4b866c6395 Add GCC 7 (#4144)
* Add GCC 7
* Allow users to build subset of GCC compilers with multi-value variant.
* Add comment explaining what 'all' actually means
* More specific golang support
* Only require Zip when building Java
* Comment out provide directives that don't currently work
* Add Ada support
* Use conflicts directive
* Fix joining of languages
* Need special flag to build jit
* Explicitly declare GNAT download extension
* Import tty, update lib64 to lib
* BRIG and Go are not supported on macOS
* Simplify formatting and imports
* JIT patch required for newer versions as well
2017-05-08 13:28:28 -07:00
Massimiliano Culpo
3efa9bd296 spec_syntax: added xfailing tests for cases in #4144 (#4151)
It seems that parse_anonymous_spec may fail if more than one part
(variant, version range, etc.) is given to the function. Added tests to
code against to fix the problem in #4144.
2017-05-08 13:24:37 -07:00
Todd Gamblin
ff3b5d88e4 rework spack help (#3033)
- Full help is now only generated lazily, when needed.
  - Executing specific commands doesn't require loading all of them.
  - All commands are only loaded if we need them for help.

- There is now short and long help:
  - short help (spack help) shows only basic spack options
  - long help (spack help -a) shows all spack options
  - Both divide help on commands into high-level sections

- Commands now specify attributes from which help is auto-generated:
  - description: used in help to describe the command.
  - section: help section
  - level: short or long

- Clean up command descriptions

- Add a `spack docs` command to open full documentation
  in the browser.

- move `spack doc` command to `spack pydoc` for clarity

- Add a `spack --spec` command to show documentation on 
  the spec syntax.
2017-05-08 13:18:29 -07:00
Denis Davydov
7923579a42 qt: add 5.8.0 which builds on Sierra with clang 8.1.0 (#4109)
* qt: add 5.8.0 which builds on Sierra with clang 8.1.0

* enable parallel build, add freetype dependency

* minor

* minor
2017-05-08 14:29:08 -05:00
scheibelp
16aa8faf45 Merge pull request #4145 from scheibelp/features/temporary-no-python-for-libxcb
Remove python dependency for libxcb and xcbproto
2017-05-08 11:22:27 -07:00
Massimiliano Culpo
85b0ebe836 BarrierTimeoutError must derive from Exception (#4157)
Seen in https://travis-ci.org/LLNL/spack/builds/229484526, very likely
due to a problem in the Travis builder.
2017-05-07 22:06:39 -07:00
Adam J. Stewart
cf93f49462 Fix PGI compiler detection on PowerPC (#4150) 2017-05-07 22:04:52 -07:00
Massimiliano Culpo
4e44d39f1a Spec.__init__: removed dead code (#4146)
The conditionals are repeated in the statement before _add_dependencies
2017-05-07 21:53:02 -07:00
Luigi Calori
b65daa93be Paramiko python extensions + his deps and other related extensions (#4158)
* adding paramiko and missing dependencies, setup to work with #2548

* adding other deps for paramiko

* fix flake8 errors

* removed spurious add

* address suggestion for proper dependencies

* fix cryptography deps

* remove FIXME comments and commented depends lines
2017-05-07 19:00:25 -05:00
nvarini
bb1a8efaca Added scala package (#67) 2017-05-07 13:05:29 +02:00
Adam J. Stewart
12633b06e4 Add Read the Docs badge to README (#4153) 2017-05-06 14:24:45 -05:00
Adam J. Stewart
42b09640f0 gmp: switch to download directly from GNU (#4152) 2017-05-06 14:24:19 -05:00