Commit graph

5859 commits

Author SHA1 Message Date
Massimiliano Culpo
43d93f7773
Deduplicate code to propagate module changes across MRO (#34157) 2022-11-30 11:10:42 +01:00
Harmen Stoppels
f8dec3e87f
Single pass text replacement (#34180) 2022-11-30 10:21:51 +01:00
Todd Gamblin
c64c9649be
debug: move "nonexistent config path" message to much higher verbosity level (#34201)
We currently report that searched config paths don't exist at debug level 1, which
clutters the output quite a bit:

```console
> spack -d solve --fresh --show asp hdf5 > hdf5.lp
==> [2022-11-29-14:18:21.035133] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/concretizer.yaml
==> [2022-11-29-14:18:21.035151] Skipping nonexistent config path /Users/gamblin2/.spack/concretizer.yaml
==> [2022-11-29-14:18:21.035169] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/concretizer.yaml
==> [2022-11-29-14:18:21.035238] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/repos.yaml
==> [2022-11-29-14:18:21.035996] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/darwin/repos.yaml
==> [2022-11-29-14:18:21.036021] Skipping nonexistent config path /etc/spack/repos.yaml
==> [2022-11-29-14:18:21.036039] Skipping nonexistent config path /etc/spack/darwin/repos.yaml
==> [2022-11-29-14:18:21.036057] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/repos.yaml
==> [2022-11-29-14:18:21.036072] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/repos.yaml
==> [2022-11-29-14:18:21.036088] Skipping nonexistent config path /Users/gamblin2/.spack/repos.yaml
==> [2022-11-29-14:18:21.036105] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/repos.yaml
==> [2022-11-29-14:18:21.071828] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/config.yaml
==> [2022-11-29-14:18:21.081628] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/darwin/config.yaml
==> [2022-11-29-14:18:21.081669] Skipping nonexistent config path /etc/spack/config.yaml
==> [2022-11-29-14:18:21.081692] Skipping nonexistent config path /etc/spack/darwin/config.yaml
==> [2022-11-29-14:18:21.081712] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/config.yaml
==> [2022-11-29-14:18:21.081731] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/config.yaml
==> [2022-11-29-14:18:21.081748] Skipping nonexistent config path /Users/gamblin2/.spack/config.yaml
==> [2022-11-29-14:18:21.081764] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/config.yaml
==> [2022-11-29-14:18:21.134909] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/packages.yaml
==> [2022-11-29-14:18:21.148695] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/darwin/packages.yaml
==> [2022-11-29-14:18:21.152555] Skipping nonexistent config path /etc/spack/packages.yaml
==> [2022-11-29-14:18:21.152582] Skipping nonexistent config path /etc/spack/darwin/packages.yaml
==> [2022-11-29-14:18:21.152601] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/packages.yaml
==> [2022-11-29-14:18:21.152620] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/packages.yaml
==> [2022-11-29-14:18:21.152637] Skipping nonexistent config path /Users/gamblin2/.spack/packages.yaml
==> [2022-11-29-14:18:21.152654] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/packages.yaml
==> [2022-11-29-14:18:21.853915] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/compilers.yaml
==> [2022-11-29-14:18:21.853962] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/darwin/compilers.yaml
==> [2022-11-29-14:18:21.853987] Skipping nonexistent config path /etc/spack/compilers.yaml
==> [2022-11-29-14:18:21.854007] Skipping nonexistent config path /etc/spack/darwin/compilers.yaml
==> [2022-11-29-14:18:21.854025] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/compilers.yaml
==> [2022-11-29-14:18:21.854043] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/compilers.yaml
==> [2022-11-29-14:18:21.854060] Skipping nonexistent config path /Users/gamblin2/.spack/compilers.yaml
==> [2022-11-29-14:18:21.854093] Reading config from file /Users/gamblin2/.spack/darwin/compilers.yaml
```

It is very rare that I want to know this much information about config search, so I've
moved this to level 3. Now at level 1, we can see much more clearly what configs were
actually found:

```console
> spack -d solve --fresh --show asp hdf5 > hdf5.lp
==> [2022-11-29-14:19:04.035457] Imported solve from built-in commands
==> [2022-11-29-14:19:04.035818] Imported solve from built-in commands
==> [2022-11-29-14:19:04.037626] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/concretizer.yaml
==> [2022-11-29-14:19:04.040033] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/repos.yaml
==> [2022-11-29-14:19:04.080852] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/config.yaml
==> [2022-11-29-14:19:04.133241] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/packages.yaml
==> [2022-11-29-14:19:04.147175] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/darwin/packages.yaml
==> [2022-11-29-14:19:05.157896] Reading config from file /Users/gamblin2/.spack/darwin/compilers.yaml
```

You can still get the old messages with `spack -ddd` (to activate debug level 3).
2022-11-29 16:17:13 -08:00
Greg Becker
451e3ff50b
warn about removal of deprecated format strings (#34101)
* warn about removal of deprecated format strings

Co-authored-by: becker33 <becker33@users.noreply.github.com>
2022-11-28 10:03:49 -08:00
Massimiliano Culpo
fdfda72371
Use a module-like object to propagate changes in the MRO, when setting build env (#34059)
This fixes an issue introduced in #32340, which changed the semantics of the "module"
object passed to the "setup_dependent_package" callback.
2022-11-28 14:18:26 +01:00
Harmen Stoppels
efa1dba9e4
Revert "Revert "gitlab: Add shared PR mirror to places pipelines look for binaries. (#33746)" (#34087)" (#34153)
This reverts commit 63e4406514.
2022-11-28 06:06:03 -07:00
Adam J. Stewart
a1b4e1bccd
Add type hints to Prefix class (#34135) 2022-11-28 13:49:57 +01:00
Satish Balay
12c23f2724
Revert "url_exists related improvements (#34095)" (#34144)
This reverts commit d06fd26c9a.

The problem is that Bitbucket's API forwards download requests to an S3 bucket using a temporary URL. This URL includes a signature for the request, which embeds the HTTP verb. That means only GET requests are allowed, and HEAD requests would fail verification, leading to 403 erros. The same is observed when using `curl -LI ...`
2022-11-26 17:56:36 +00:00
Harmen Stoppels
2167cbf72c
Track locks by (dev, ino); close file handlers between tests (#34122) 2022-11-25 10:57:33 +01:00
Valentin Volkl
7847d4332e
docs: update info on XCode requirements (#34097) 2022-11-24 00:20:09 +01:00
Tom Scogland
0182603609
Control Werror by converting to Wno-error (#30882)
Using `-Werror` is good practice for development and testing, but causes us a great
deal of heartburn supporting multiple compiler versions, especially as newer compiler
versions add warnings for released packages.  This PR adds support for suppressing
`-Werror` through spack's compiler wrappers.  There are currently three modes for
the `flags:keep_werror` setting:

* `none`: (default) cancel all `-Werror`, `-Werror=*` and `-Werror-*` flags by
  converting them to `-Wno-error[=]*` flags
* `specific`: preserve explicitly selected warnings as errors, such as
  `-Werror=format-truncation`, but reverse the blanket `-Werror`
* `all`: keeps all `-Werror` flags

These can be set globally in config.yaml, through the config command-line flags, or
overridden by a particular package (some packages use Werror as a proxy for determining
support for other compiler features).  We chose to use this approach because:

1. removing `-Werror` flags entirely broke *many* build systems, especially autoconf
   based ones, because of things like checking `-Werror=feature` and making the
   assumption that if that did not error other flags related to that feature would also work
2. Attempting to preserve `-Werror` in some phases but not others caused similar issues
3. The per-package setting came about because some packages, even with all these
   protections, still use `-Werror` unsafely.  Currently there are roughly 3 such packages
   known.
2022-11-23 12:29:17 -08:00
Harmen Stoppels
d06fd26c9a
url_exists related improvements (#34095)
For reasons beyond me Python thinks it's a great idea to upgrade HEAD
requests to GET requests when following redirects. So, this PR adds a
better `HTTPRedirectHandler`, and also moves some ad-hoc logic around
for dealing with disabling SSL certs verification.

Also, I'm stumped by the fact that Spack's `url_exists` does not use
HEAD requests at all, so in certain cases Spack awkwardly downloads
something first to see if it can download it, and then downloads it
again because it knows it can download it. So, this PR ensures that both
urllib and botocore use HEAD requests.

Finally, it also removes some things that were there to support currently
unsupported Python versions.

Notice that the HTTP spec [section 10.3.2](https://datatracker.ietf.org/doc/html/rfc2616.html#section-10.3.2) just talks about how to deal
with POST request on redirect (whether to follow or not):

>   If the 301 status code is received in response to a request other
>   than GET or HEAD, the user agent MUST NOT automatically redirect the
>   request unless it can be confirmed by the user, since this might
>   change the conditions under which the request was issued.

>   Note: When automatically redirecting a POST request after
>   receiving a 301 status code, some existing HTTP/1.0 user agents
>   will erroneously change it into a GET request.

Python has a comment about this, they choose to go with the "erroneous change".
But they then mess up the HEAD request while following the redirect, probably
because they were too busy discussing how to deal with POST.

See https://github.com/python/cpython/pull/99731
2022-11-23 19:26:24 +00:00
Harmen Stoppels
63e4406514
Revert "gitlab: Add shared PR mirror to places pipelines look for binaries. (#33746)" (#34087)
This reverts commit 5c4137baf1.
2022-11-23 10:41:52 -08:00
Cory Bloor
1006c77374
rocm: add minimum versions for amdgpu_targets (#34030) 2022-11-23 14:23:38 +01:00
Adam J. Stewart
5b3b0130f2
Build System docs: consistent headers (#34047) 2022-11-23 13:35:55 +01:00
Michael Kuhn
0fd3c9f451
cmd/checksum: allow adding new versions to package (#24532)
This adds super-lazy maintainer mode to `spack checksum`: Instead of
only printing the new checksums to the terminal, `-a` and
`--add-to-package` will add the new checksums to the `package.py` file
and open it in the editor afterwards for final checks.
2022-11-22 16:30:49 -08:00
Harmen Stoppels
4bf964e6b3
spack uninstall: use topo order (#34053) 2022-11-22 07:22:07 -07:00
Massimiliano Culpo
bd198312c9
Revert "Warn about removal of deprecated format strings (#33829)" (#34056)
This reverts commit 7f9af8d4a0.
2022-11-22 12:35:36 +01:00
Greg Becker
7f9af8d4a0
Warn about removal of deprecated format strings (#33829)
Co-authored-by: becker33 <becker33@users.noreply.github.com>
2022-11-22 10:56:57 +01:00
John W. Parent
793a7bc6a9
Windows: add registry query and SDK/WDK packages (#33021)
* Add a WindowsRegistryView class, which can query for existing
  package installations on Windows. This is particularly important
  because some Windows packages (including those added here)
  do not allow two simultaneous installs, and this can be
  queried in order to provide a clear error message.
* Consolidate external path detection logic for Windows into
  WindowsKitExternalPaths and WindowsCompilerExternalPaths objects.
* Add external-only packages win-sdk and wgl
* Add win-wdk (including external detection) which depends on
  win-sdk
* Replace prior msmpi implementation with a source-based install
  (depends on win-wdk). This install can control the install
  destination (unlike the binary installation).
* Update MSVC compiler to choose vcvars based on win-sdk dependency
* Provide "msbuild" module-level variable to packages during build
* When creating symlinks on Windows, need to explicitly specify when
  a symlink target is a directory
* executables_in_path no-longer defaults to using PATH (this is
  now expected to be taken care of by the caller)
2022-11-22 00:27:42 -08:00
Harmen Stoppels
44c22a54c9
Spec traversal: add option for topological ordering (#33817)
Spec traversals can now specify a topological ordering. A topologically-
ordered traversal with input specs X1, X2... will

* include all of X1, X2... and their children
* be ordered such that a given node is guaranteed to appear before any
  of its children in the traversal

Other notes:

* Input specs can be children of other input specs (this is useful if
  a user specifies a set of specs to uninstall: some of those specs
  might be children of others)
* `direction="parents"` will produce a reversed topological order
  (children always come before parents).
* `cover="edges"` will generate a list of edges L such that (a) input
  edges will always appear before output edges and (b) if you create
  a list with the destination of each edge in L the result is
  topologically ordered
2022-11-21 18:33:35 -08:00
Massimiliano Culpo
0e4ee3d352
Speed-up a few unit-tests (#34044)
* test_suite.py: speed up slow test by using mock packages

* Don't resolve the sha during unit-tests

* Skip long-running test that fails, instead of executing it
2022-11-21 23:50:55 +01:00
Scott Wittenburg
6411cbd803
ci: restore ability to reproduce gitlab job failures (#33953) 2022-11-21 10:39:03 -06:00
Harmen Stoppels
8ea366b33f
uninstall: fix accidental cubic complexity (#34005)
* uninstall: fix accidental cubic complexity

Currently spack uninstall runs in worst case cubic time complexity
thanks to traversal during traversal during traversal while collecting
the specs to be uninstalled.

Also brings down the number of error messages printed to something
linear in the amount of matching specs instead of quadratic.
2022-11-21 16:44:48 +01:00
Massimiliano Culpo
45b4cedb7e
spack find: remove deprecated "--bootstrap" option (#34015) 2022-11-19 16:09:34 +01:00
Chris Green
409cf185ce
package_base.py: Fix #34006: test msg needs to be a string (#34007) 2022-11-19 13:02:51 +01:00
Chris Green
e715901cb2
PackageBase should not define builder legacy attributes (#33942)
* Add a regression test for 33928

* PackageBase should not set `(build|install)_time_test_callbacks`

* Fix audits by preserving the current semantic

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-11-18 22:22:51 +01:00
Massimiliano Culpo
839a14c0ba
Improve error message for requirements (#33988)
refers #33985
2022-11-18 15:49:46 +01:00
Jared Popelar
381bedf369
Hdf5 package: build on Windows (#31141)
* Enable hdf5 build (including +mpi) on Windows
* This includes updates to hdf5 dependencies openssl (minor edit) and
  bzip2 (more-extensive edits)
* Add binary-based installation of msmpi (this is currently the only
  supported MPI implementation in Spack for Windows). Note that this
  does not install to the Spack-specified prefix. This implementation
  will be replaced with a source-based implementation

Co-authored-by: John Parent <john.parent@kitware.com>
2022-11-17 10:40:53 -08:00
Chris Green
22aada0e20
Waf build system: fix typo in legacy_attributes (#33958)
Fix erroneous duplication of `build_time_test_callbacks` in
`legacy_attributes`: one of the duplicates should be
`install_time_test_callbacks`
2022-11-17 16:54:46 +01:00
Harmen Stoppels
cc2d0eade6
docs: fix typo in multiple build systems (#33965) 2022-11-17 15:20:10 +01:00
Harmen Stoppels
f00e411287
relocate.py: small refactor for file_is_relocatable (#33967) 2022-11-17 13:21:27 +01:00
Massimiliano Culpo
da0a6280ac
Remove deprecated subcommands from "spack bootstrap" (#33964)
These commands are slated for removal in v0.20
2022-11-17 12:42:57 +01:00
Michael Kuhn
93eecae0c3
Add sgid notice when running on AFS (#30247) 2022-11-17 09:17:41 +01:00
Brian Vanderwende
c721aab006
lib/spack/spack/store.py: Fix #28170 for padding relocation (#33122) 2022-11-17 03:56:00 +01:00
Greg Becker
1263b5c444
initial implementation of slingshot detection (#33793) 2022-11-16 13:01:37 -08:00
psakievich
90f0a8eacc
Upstreams: add canonicalize path (#33946) 2022-11-16 14:37:32 -06:00
John W. Parent
61a7420c94
Windows bootstrapping: remove unneeded call to add dll to PATH (#33622)
#32942 fixed bootstrapping on Windows by having the core Spack
code explicitly add the Clingo package bin/ directory as a
DLL path.

Since then, #33400 has been merged, which ensures that the Python
module installed by the Spack `clingo` package can find the DLLs
in bin/.

Note that this only works for Spack instances which have been
bootstrapped after #33400: for installations bootstrapped before
then, you will need to run `spack clean -b` (this would only
be needed for Spack instances running on Windows).
2022-11-16 12:04:57 -08:00
Stephen Sachs
39a1f1462b
SIP build system: fix "python not defined in builder" (#33906)
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-11-16 13:36:25 -06:00
Harmen Stoppels
0a952f8b7b
docs updates for spack env depfile (#33937) 2022-11-16 15:47:31 +01:00
Harmen Stoppels
d18cccf7c5
spack env depfile in Gitlab CI should use install-deps/pkg-version-hash target (#33936) 2022-11-16 14:02:56 +00:00
Kevin Broch
fbe6b4b486
Change code suggestions to output black formatter compliant code (#33931) 2022-11-16 12:08:20 +01:00
Adam J. Stewart
93430496e2
Getting Started: Python 2 is no longer supported (#33927) 2022-11-16 08:36:49 +01:00
Michael Kuhn
901b31a7aa
docs: fix typo (#33926) 2022-11-15 16:06:12 -08:00
Harmen Stoppels
a0182c069f
Show time per phase (#33874) 2022-11-15 21:10:07 +01:00
Harmen Stoppels
af74680405
depfile: improve tab completion (#33773)
This PR allows you to do:

```
spack env create -d .
spack -e . add python
spack -e . concretize
spack -e . env depfile -o Makefile

make in<tab>              # -> install
make install-<tab>        # -> install-deps/
make install-deps/py<tab> # -> install-deps/python-x.y.z-hash
make install/zl<tab>      # -> install/zlib-x.y.z-hash

make SP<tab>              # -> make SPACK
make SPACK_<tab>          # -> make SPACK_INSTALL_FLAGS=
```
2022-11-15 18:03:17 +01:00
Harmen Stoppels
d1715c5fdf
Fixup: start the timer before the phase (#33917) 2022-11-15 16:52:43 +01:00
Harmen Stoppels
b245f1ece1
Fix incorrect timer (#33900)
Revamp the timer so we always have a designated begin and end.

Fix a bug where the phase timer was stopped before the phase started,
resulting in incorrect timing reports in timers.json.
2022-11-15 16:33:47 +01:00
Brian Van Essen
fd4f905ce5
External find now searches all dynamic linker paths (#33800)
Add spack.ld_so_conf.host_dynamic_linker_search_paths

Retrieve the current host runtime search paths for shared libraries;
for GNU and musl Linux we try to retrieve the dynamic linker from the
current Python interpreter and then find the corresponding config file
(e.g. ld.so.conf or ld-musl-<arch>.path). Similar can be done for
BSD and others, but this is not implemented yet. The default paths
are always returned. We don't check if the listed directories exist.

Use this in spack external find for libraries.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-11-15 14:48:15 +01:00
Harmen Stoppels
2948248d7a
Remove exit(0) (#33896)
Since they cause --backtrace to report backtraces even with exit code 0
2022-11-15 14:35:44 +01:00