Commit graph

28590 commits

Author SHA1 Message Date
Andrew W Elble
5b3af53b10
qiskit: updates (#33877) 2022-11-21 21:10:10 -06:00
Harmen Stoppels
44c22a54c9
Spec traversal: add option for topological ordering (#33817)
Spec traversals can now specify a topological ordering. A topologically-
ordered traversal with input specs X1, X2... will

* include all of X1, X2... and their children
* be ordered such that a given node is guaranteed to appear before any
  of its children in the traversal

Other notes:

* Input specs can be children of other input specs (this is useful if
  a user specifies a set of specs to uninstall: some of those specs
  might be children of others)
* `direction="parents"` will produce a reversed topological order
  (children always come before parents).
* `cover="edges"` will generate a list of edges L such that (a) input
  edges will always appear before output edges and (b) if you create
  a list with the destination of each edge in L the result is
  topologically ordered
2022-11-21 18:33:35 -08:00
Chris Green
f97f37550a
libjpeg-turbo: make build_system settings comprehensive (#34046) 2022-11-22 03:15:32 +01:00
Massimiliano Culpo
0e4ee3d352
Speed-up a few unit-tests (#34044)
* test_suite.py: speed up slow test by using mock packages

* Don't resolve the sha during unit-tests

* Skip long-running test that fails, instead of executing it
2022-11-21 23:50:55 +01:00
Brian Van Essen
05fc800db9
Fixed the rdma-core package to find its external library (#33798) 2022-11-21 15:45:47 -07:00
Dom Heinzeller
2387c116ad
ecflow: add v5.8.3, update with changes from JCSDA-EMC fork (#34038) 2022-11-21 11:01:52 -07:00
Scott Wittenburg
6411cbd803
ci: restore ability to reproduce gitlab job failures (#33953) 2022-11-21 10:39:03 -06:00
Harmen Stoppels
8ea366b33f
uninstall: fix accidental cubic complexity (#34005)
* uninstall: fix accidental cubic complexity

Currently spack uninstall runs in worst case cubic time complexity
thanks to traversal during traversal during traversal while collecting
the specs to be uninstalled.

Also brings down the number of error messages printed to something
linear in the amount of matching specs instead of quadratic.
2022-11-21 16:44:48 +01:00
Drew Whitehouse
9a2fbf373c
openvdb: update to v10.0.0 (#33835) 2022-11-21 06:38:28 +01:00
Mosè Giordano
9e1fef8813
texinfo: require also makeinfo executable (#33370)
* texinfo: require also `makeinfo` executable
* texinfo: add versions 6.6, 6.7, 6.8
* texinfo: add `info` and `makeinfo` sanity checks
2022-11-21 05:20:11 +01:00
Alec Scott
f8a6e3ad90
hugo: add v0.106.0 (#34023) 2022-11-21 04:22:32 +01:00
Adam J. Stewart
0706919b09
Python: specify tcl/tk version requirements (#34027) 2022-11-20 19:13:47 -06:00
Wouter Deconinck
b9b93ce272
qt6: new packages (#29555)
* qt6: initial commit of several basic qt6 packages

* Qt6: fix style issues

* [qt6] fix style issues, trailing spaces

* [qt6] rename to qt-* ecosystem; remove imports

* [qt6] rename dependencies; change version strings

* [qt6] list_urls

* [qt6] homepage links

* [qt6] missing closing quotes failed style check

* qt-declarative: use private _versions

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>

* qt-quick3d, qt-quicktimeline, qt-shadertools: use private _versions

* qt-base: rework feature defines and use run_tests

* qt: new version 6.2.4

* flake8 whitespace before comma

* qt-base: variant opengl when +gui

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>

* qt6: rebase and apply new black style

* qt6: apply style isort fixes

* qt6: new version 6.3.0 and 6.3.1

* qt6: add 6.3.0 and 6.3.1 to versions list

* qt6: multi-argument join_path

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* qt-base: fix isort

* qt-shadertools: no cmake_args needed

* qt-declarative: imports up front

* qt-quick3d: fix import

* qt-declarative: remove useless cmake_args

* qt-shadertools: imports and join_path fixes

* qt-quick3d: join_path fixes

* qt-declarative: join_path fixes

* Update features based on gui usage

* Update dependencies, cmake args, mac support

* Update features based on linux

* More updates

* qt-base: fix style

* qt-base: archive_files join_path

* qt-base: new version 6.3.2

* qt-{declarative,quick3d,quicktimeline,shadertools}@6.3.2

* qt-base: require libxcb@1.13: and use system xcb_xinput when on linux

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-20 20:03:52 -05:00
Pedro Ciambra
87cb9760ce
mold: new package for the mold linker (#34017) 2022-11-21 01:32:47 +01:00
Adam J. Stewart
d472e28bfe
py-numpy: add v1.23.5 (#34026) 2022-11-21 00:40:37 +01:00
Bernhard Kaindl
dbc81549db
krb5: Add new versions 1.19.4 and 1.20.1 (#34021)
Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2022-11-21 00:39:13 +01:00
Sam Grayson
dc00c4fdae
Update dask and related packages (#33925)
* Update dask and related packages

* Update package dependency specs

* Run spack style

* Add new version of locket

* Respond to comments

* Added constraints

* Add version constraints for py-dask+distributed

* Run spack style

* Update var/spack/repos/builtin/packages/py-dask/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Deprecated dask versions

* Deprecated more dask and distirbuted

* spack style --fix

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-20 12:43:32 -06:00
Bernhard Kaindl
f1b9da16c8
bash: Update 5.1 to 5.1.16 (#34022) 2022-11-20 18:36:24 +01:00
Adam J. Stewart
93ce943301
py-torch: add note about MPS variant (#34018) 2022-11-19 18:10:06 -07:00
Jen Herting
632b36ab5d
New package: py-ahpy (#34008)
* first build of ahpy

* updated to limit python to >4

* added from spack.package import * to >4

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2022-11-19 12:10:14 -07:00
Paul Romano
94c76c5823
OpenMC: add v0.13.2 (#33903)
* openmc: add v0.13.2

* Fix style formatting

* Update Python version dependency

* Update numpy version dependency
2022-11-19 12:22:58 -06:00
Massimiliano Culpo
45b4cedb7e
spack find: remove deprecated "--bootstrap" option (#34015) 2022-11-19 16:09:34 +01:00
Erik Schnetter
6d0a8f78b2
libxcrypt: Disable -Werror (#34013) 2022-11-19 06:29:50 -07:00
Chris Green
409cf185ce
package_base.py: Fix #34006: test msg needs to be a string (#34007) 2022-11-19 13:02:51 +01:00
iarspider
602984460d
Boost: enable lzma and zstd iostreams (#33998) 2022-11-19 12:07:52 +01:00
Olivier Cessenat
62b1d52a1e
graphviz: remove 1. cyclic dep when +pangocairo and 2. error with poppler+glib (#32120)
* graphviz: remove cyclic dep to svg when pangocairo and poppler+glib failure

* graphviz: remove cyclic dep to svg when pangocairo and poppler+glib failure
2022-11-19 11:53:09 +01:00
Jim Edwards
790bd175e0
parallelio: update package to use mpi-serial, add extra module info (#33153) 2022-11-19 03:50:01 -07:00
Adam J. Stewart
2f057d729d
py-scipy: add v1.9 (#31810) 2022-11-19 11:16:01 +01:00
Jerome Soumagne
a124185090
mercury: add version 2.2.0 (#31966)
add psm, psm2 and hwloc variants

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-19 11:12:52 +01:00
Michael Kuhn
c5235bbe86
sqlite: add 3.40.0 (#33975) 2022-11-18 18:42:03 -07:00
Chris Green
e715901cb2
PackageBase should not define builder legacy attributes (#33942)
* Add a regression test for 33928

* PackageBase should not set `(build|install)_time_test_callbacks`

* Fix audits by preserving the current semantic

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-11-18 22:22:51 +01:00
Robert Blake
1db914f567
Updating faiss with new versions (#33983)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-11-18 21:43:41 +01:00
Robert Blake
688dae7058
Updating hiredis with new software versions (#33982) 2022-11-18 21:43:20 +01:00
Richard Berger
ddb460ec8d
charliecloud: new version 0.30 (#34004) 2022-11-18 11:29:33 -08:00
snehring
703e5fe44a
trnascan-se: adding missing build dep (#33978) 2022-11-18 11:22:21 -08:00
Bernhard Kaindl
c601bdf7bf
gcc: Ensure matching assembler/binutils on RHEL8 (#33994)
gcc@10: Newer binutils than RHEL7/8's are required to for guaranteed operaton. Therefore, on RHEL7/8, reject ~binutils. You need to add +binutils to be sure to have binutils which are recent enough.

See this discussion with the OpenBLAS devs for reference:
https://github.com/xianyi/OpenBLAS/issues/3805#issuecomment-1319878852

Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2022-11-18 10:55:52 -08:00
Satish Balay
778dddc523
pflotran: add "rxn" variant (#33995) 2022-11-18 10:34:27 -08:00
Robert Underwood
acc19ad34f
LibPressio support for MGARD (#33999)
Co-authored-by: Robert Underwood <runderwood@anl.gov>
2022-11-18 10:26:50 -08:00
Adam J. Stewart
f4826e1b33
py-mypy: add new versions; add new py-types packages (#34002)
* py-mypy: add new versions
* Add new packages
2022-11-18 10:23:55 -08:00
snehring
05ff7e657c
py-cutadapt: adding version 4.1 (#33959)
* py-dnaio: adding version 0.9.1
py-cutadapt: adding version 4.1

* py-cutadapt: remove old python versions

* py-dnaio: remove old python versions

* py-cutadapt: add cython dep
2022-11-18 10:33:57 -07:00
Massimiliano Culpo
839a14c0ba
Improve error message for requirements (#33988)
refers #33985
2022-11-18 15:49:46 +01:00
Bernhard Kaindl
9aafbec121
openblas: Fix build on ARM Neoverse with gcc@:9 (no sve2+bf16) (#33968)
Also improve the InstallError message when +fortran but no FC was added.

Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2022-11-18 02:54:04 -07:00
iarspider
20071e0c04
Update libjpeg-turbo using new multibuildsystem approach (#33971)
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-18 01:41:53 -07:00
Adam J. Stewart
51bb2f23a3
py-pytorch-lightning: add v1.8.2 (#33984) 2022-11-17 23:13:55 -07:00
Ross Miller
2060d51bd0
libxml2: make older versions depend on python@:3.9 (#33952)
Add a dependency on python versions less than 3.10 in order to work
around a bug in libxml2's configure script that fails to parse python
version strings with more than one character for the minor version.

The bug is present in v2.10.1, but has been fixed in 2.10.2.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-18 05:16:11 +01:00
Harmen Stoppels
e5af0ccc09
libuv-julia: usa static libs for julia (#33980) 2022-11-18 03:09:07 +01:00
Jen Herting
284859e742
[lerc] added version 4.0.0 (#33974)
* [lerc] added version 4.0.0

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-11-17 19:50:58 -06:00
Cory Quammen
37e77f7a15
ParaView: add ParaView-5.11.0 new release (#33972) 2022-11-17 18:06:08 -07:00
Harmen Stoppels
d2432e1ba4
julia: 1.8.3 (#33976) 2022-11-17 16:18:32 -07:00
David
5809ba0e3f
ompss-2: new package (#33844) 2022-11-17 15:03:32 -08:00