Commit graph

13756 commits

Author SHA1 Message Date
Sinan
70e4377348 Mapnik: fix runtime error involving py-pycairo and PDF (#13865)
* fix runtime error involving py-pycairo and PDF

* Update var/spack/repos/builtin/packages/py-python-mapnik/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* fix env setup
2019-11-25 13:01:14 -06:00
Joe Koning
c349759acd Add the py-importlib-resources package (#13854)
* Add the py-importlib_re package

* Rename package to conform with spack naming convention.

* Rename package to py-importlib-resources
Add python depend modules for previous python versions and depends_on python.

* Add whitespaces.
2019-11-25 13:00:45 -06:00
Toyohisa Kameyama
87e757ee93 cctools: fix python related error. (#13802)
* cctools: fix python related error.

* patch bugfix.
2019-11-25 12:57:09 -06:00
Sinan
448e09e5b2 Add latest version of bazel (#13813)
* use bazel commit in #13112, and add version 0.24.1, and corresponding cc_env patch

* undo preferred java version by dodo47

* patch for v0.26

* Update install steps

* Add patches for more versions

* Add unit tests

* Update patches for new Spack env vars

* env is already defined, use spackEnv
2019-11-25 11:59:12 -06:00
Joe Koning
289aa6ad8a py-celery: added new package (#13851) 2019-11-25 16:28:06 +01:00
Joe Koning
be9c551add py-amqp: added new package (#13848)
* Add the py-amqp package

* Add the py-vine dependency.

* Add vine version and python dependency.
2019-11-25 16:26:59 +01:00
iarspider
53c2b618da py-qtpy: enable use with pyqt5, pyside and pyside2 (#13837) 2019-11-25 16:14:57 +01:00
Joe Koning
0cb5460a52 py-kombu: added new package (#13855) 2019-11-25 16:02:03 +01:00
t-karatsu
b8c18068c2 prank: use Spack compilers and remove x86_64 opts from Makefile (#13877) 2019-11-25 15:14:18 +01:00
darmac
3a94c032c7 netperf: added new package (#13876) 2019-11-25 15:12:32 +01:00
darmac
bb6a203fe1 ltp: added new package (#13878) 2019-11-25 14:38:25 +01:00
Hadrien G
fa37387373 ACTS v0.11.0 + adding maintainer (#13880) 2019-11-25 14:33:16 +01:00
darmac
2f2dd879f7 add new package : py-cssselect (#13879) 2019-11-25 14:32:04 +01:00
Oliver Breitwieser
4c4aba5f9e ack: Fix install modifying download cache (#13836)
This makes several installs from the same download cache impossible once
the hash of the used perl-install changes.

Fixes: #13824

Change-Id: I5f10d9d54ae999d0ca7e4171f989dfca2e6a7169
2019-11-24 17:33:49 -06:00
Christoph Junghans
959f52dbf5
tinker: initial commit (#13869) 2019-11-24 10:31:15 -07:00
Christoph Junghans
8b1d800d53
ncurses: don't run strip internally (#13843)
* ncurses: don't run strip internally

* setup_environment -> setup_build_environment

* fix ABI change
2019-11-23 20:47:59 -07:00
Adam J. Stewart
c3c5abb9cc
py-matplotlib backend dependencies needed at runtime (#13867) 2019-11-23 21:23:45 -06:00
Adam J. Stewart
42a0061cb0
Add py-scipy 1.3.3 (#13866) 2019-11-23 16:50:02 -06:00
Joe Koning
c7472e0cbe Add the py-humanfriendly package (#13853) 2019-11-23 19:12:03 +01:00
Adam J. Stewart
e5588880d5 Fix setuptools dependency in py-snowballstemmer (#13844) 2019-11-23 15:25:24 +01:00
Joe Koning
0a14a0c48d Add the py-billiard package (#13849) 2019-11-23 14:14:28 +01:00
Joe Koning
836b6016e4 Add the py-parse package (#13856) 2019-11-23 09:36:29 +01:00
Joe Koning
2c8a867a81 Add the py-vine package (#13857) 2019-11-23 09:35:07 +01:00
Sajid Ali
ff64004a7b likwid: added version 5.0.0 (#13858) 2019-11-23 09:21:59 +01:00
Joe Koning
99650d6caf py-cached-property: added new package at v 1.5.1 (#13850) 2019-11-23 09:20:24 +01:00
darmac
b95961d26b ethtool: new package at version 4.8 (#13864) 2019-11-23 09:17:49 +01:00
Satish Balay
da883f2270 petsc: add version 3.12.2 (#13859) 2019-11-22 20:35:16 -06:00
George Hartzell
48420d0c24 New package: py-wub, with supporting fixes (#13773)
* Add py-wub, with supporting fixes

- add py-wub
- add py-pycmd because py-wub needs it
- update py-statsmodels, which needs at least v0.9.0 to work with
  python3.7 because cython.

* Update based on Adam's comments

* Fix dependency types for py-six in py-wub

* statsmodels tests fail, update comment w/ Issue #

The statsmodels tests weren't run in the previous version of the
package.  If I enable them, the fail.

Update the package comment with the statsmodels issue I opened to
track the problem:
https://github.com/statsmodels/statsmodels/issues/6263

* Update dependency types in py-wub/package.py

* flake8 cleanups

* Make statsmodels tests work

- need to use patsy@0.5.1:
- need to run the tests from within the build/lib* dir
2019-11-22 20:34:43 -06:00
Greg Becker
6c55a7c85f
cmd/install: remove unused install_status option (#13751)
* cmd/install: remove unused install_status option

* update bash completions for spack install
2019-11-22 11:17:37 -07:00
Massimiliano Culpo
f53abbecd3
Remove mirrors from Travis cache (#13841) 2019-11-22 19:00:00 +01:00
Christoph Junghans
b23d2efd99
votca-*: add v1.5.1 (#13822) 2019-11-21 16:09:03 -07:00
Massimiliano Culpo
0684a58d16 Fixed detection for cascadelake microarchitecture (#13820)
fixes #13803
2019-11-21 13:09:48 -07:00
George Hartzell
73038a3f51 Add mg, a gnu-emacs like fork of microemacs (#13812)
* Add mg, a gnu-emacs like fork of microemacs

* Use Package, since not really an Autotools package

Switch from AutotoolsPackage to Package.  Even though mg has a
configure script, it's not really an Autotools package.

* Need to also provide --prefix to configure
2019-11-21 11:40:13 -07:00
Toyohisa Kameyama
bed7e40dcc cbtf-krell: add rpcsvc-proto and libtirpc dependency. (#13800) 2019-11-21 11:38:09 -07:00
Elizabeth Fischer
9a6a19d464 doxygen: added missing dependencies to the package (#10589)
See http://www.doxygen.nl/manual/install.html
2019-11-21 15:30:31 +01:00
t-karatsu
49b9365205 texinfo: fix unescaped braces, and update locale handling (#13815)
* texinfo: Fix unescaped braces for older version.

* texinfo: update locale handling.
2019-11-20 20:54:55 -07:00
Shintaro Iwasaki
71cd91e4c1 update Argobots and BOLT (#13765)
* argobots: update to 1.0rc2

* bolt: update to 1.0rc3

* argobots/bolt: add maintainers

* argobots: use "master" for the master branch
2019-11-20 19:04:46 -07:00
Douglas Duckworth
100fcc2c8e added hmmer v 3.3 (#13793) 2019-11-20 19:04:27 -07:00
Brian Van Essen
2f069b571d Updated versions numbers for Aluminum and Hydrogen. (#13814) 2019-11-20 19:04:01 -07:00
Paul Ferrell
fb3a3ba95e mirror bug fixes: symlinks, duplicate patch names, and exception handling (#13789)
* Some packages (e.g. mpfr at the time of this patch) can have patches
  with the same name but different contents (which apply to different
  versions of the package). This appends part of the patch hash to the
  cache file name to avoid conflicts.
* Some exceptions which occur during fetching are not a subclass of
  SpackError and therefore do not have a 'message' attribute. This
  updates the logic for mirroring a single spec (add_single_spec)
  to produce an appropriate error message in that case (where before
  it failed with an AttributeError)
* In various circumstances, a mirror can contain the universal storage
  path but not a cosmetic symlink; in this case it would not generate
  a symlink. Now "spack mirror create" will create a symlink for any
  package that doesn't have one.
2019-11-20 17:00:44 -07:00
t-karatsu
9cd778f152 ampliconnoise: Change return type of function. (#13766)
* ampliconnoise: Change function type.

* ampliconnoise: updated api call to setup run environment
2019-11-20 16:03:51 -07:00
健美猞猁
1e52aa750a find-circ: a new package. (#13767)
* find-circ: a new package.

* flake8.
2019-11-20 16:02:34 -07:00
健美猞猁
5e9ca0f939 miranda: a new package. (#13768) 2019-11-20 16:01:41 -07:00
Figroc Chen
ace47cecbe tensorflow-serving-client: add new package (#13771) 2019-11-20 16:01:04 -07:00
t-karatsu
af9281b843 bpp-suite: Clarify 'isinf' function's namespace. (#13777) 2019-11-20 15:52:44 -07:00
David Hows
ad4986be94 Fix for overlong shebang in valgrind (#13779)
Fix for some overlong shebangs in valgrind. Borrowed from verrou/package.py
2019-11-20 15:50:14 -07:00
noguchi-k
894267e02e py-numexpr3: fix version (#13781) 2019-11-20 15:49:13 -07:00
Ken Raffenetti
f25cf16b11 mpich: Add 3.3.2 (#13790) 2019-11-20 15:48:11 -07:00
Justin S
63874db562 genrich: new package at 0.6 (#13791) 2019-11-20 15:47:36 -07:00
Justin S
38ae7ab6cd sentieon-genomics: add 201808.07 (#13794) 2019-11-20 15:46:22 -07:00