Commit graph

35532 commits

Author SHA1 Message Date
Massimiliano Culpo
6f7f9528e5
cray-rhel: add a lower bound to mgard (#43187) 2024-03-15 11:25:56 +01:00
Greg Becker
59c7ff8683
Allow compilers to be configured in packages.yaml (#42016)
Co-authored-by: becker33 <becker33@users.noreply.github.com>
2024-03-15 11:01:49 +01:00
John W. Parent
4495e0341d
Clingo bootstrapping: Remove msvc constraint (#43199)
Patch allowing Clingo to build with VS22 has landed both in Spack
and Clingo upstream, update Spack's bootstrap constraints to handle
this.

Additionally, properly scope the patch application in the clingo
package to handle upstream patch.
2024-03-14 19:08:38 -06:00
eugeneswalker
ba39924046
e4s cray ci: mgard is broken, disable spec (#43194) 2024-03-14 14:06:36 -07:00
Sergey Kosukhin
751c3fef86
nag: add version 7.2.7200 (#43188) 2024-03-14 15:04:05 -06:00
Adrien Bernede
102811adb9
Fix Axom: index out of range when configuring axom~mpi on toss_4 (#43186) 2024-03-14 14:49:09 -06:00
Massimiliano Culpo
8f56eb620f
Improve error message when an unknown compiler is requested (#43143)
Fixes #43141
2024-03-14 13:47:56 -07:00
Peter Scheibel
ec517b40e9
spack develop: stage build artifacts in same root as non-dev builds (#41373)
Currently (outside of this PR) when you `spack develop` a path, this path is treated as the staging
directory (this means that for example all build artifacts are placed in the develop path).

This PR creates a separate staging directory for all `spack develop`ed builds. It looks like

```
# the stage root
/the-stage-root-for-all-spack-builds/
    spack-stage-<hash>
        # Spack packages inheriting CMakePackage put their build artifacts here
        spack-build-<hash>/
```

Unlike non-develop builds, there is no `spack-src` directory, `source_path` is the provided `dev_path`.
Instead, separately, in the `dev_path`, we have:

```
/dev/path/for/foo/
    build-{arch}-<hash> -> /the-stage-root-for-all-spack-builds/spack-stage-<hash>/
```

The main benefit of this is that build artifacts for out-of-source builds that are relative to
`Stage.path` are easily identified (and you can delete them with `spack clean`).

Other behavior added here:

- [x] A symlink is made from the `dev_path` to the stage directory. This symlink name incorporates
    spec details, so that multiple Spack environments that develop the same path will not conflict
    with one another

- [x] `spack cd` and `spack location` have added a `-c` shorthand for `--source-dir`

Spack builds can still change the develop path (in particular to keep track of applied patches), 
and for in-source builds, this doesn't change much (although logs would not be written into 
the develop path). Packages inheriting from `CMakePackage` should get this benefit
automatically though.
2024-03-14 13:32:01 -07:00
Martin Aumüller
22cb3815fe
ispc: add v1.22.0 & v1.23.0 (#43159)
* ispc: add v1.22.0 & v1.23.0
* ispc: fix build on macos
  apply upstream patch
* ispc: demote llvm to just a build dependency
  still builds fine
2024-03-14 10:59:45 -07:00
Greg Becker
f549354f78
move --deprecated arg to concretizer args (#43177) 2024-03-14 18:43:52 +01:00
Scott Wittenburg
dc212d0e59
mgard: add version 2023-12-09 (1.5.2) (#41493) 2024-03-14 11:15:47 -06:00
victor-decaria-nnl
8f14acb139
mfem: add MUMPs option (#42929)
* Added MUMPs option to mfem
* implement suggestions
* loosened mumps+metis dependency to just mumps
2024-03-14 09:09:24 -07:00
Harmen Stoppels
c38ef72b06
compiler.py: simplify implicit link dir bits (#43078) 2024-03-14 08:54:47 +01:00
jmuddnv
7d67d9ece4
nvhpc: add v24.3 (#43175) 2024-03-14 08:35:09 +01:00
Carlos Bederián
2c30962c74
amduprof: new package (#30575)
Co-authored-by: zzzoom <zzzoom@users.noreply.github.com>
2024-03-14 07:44:43 +01:00
dependabot[bot]
cc28334049
build(deps): bump pytest from 8.0.2 to 8.1.1 in /lib/spack/docs (#43134)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.0.2 to 8.1.1.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.0.2...8.1.1)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-03-14 07:40:15 +01:00
dependabot[bot]
dbdf5bacc4
build(deps): bump actions/checkout from 4.1.1 to 4.1.2 (#43152)
Bumps [actions/checkout](https://github.com/actions/checkout) from 4.1.1 to 4.1.2.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](b4ffde65f4...9bb56186c3)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-03-14 05:55:08 +01:00
Rocco Meli
531f01f0b9
highway: add v1.1.0 (#43174) 2024-03-14 05:43:37 +01:00
Sebastian Pipping
794593b478
expat: Add release 2.6.2 with security fixes (#43171) 2024-03-13 22:43:00 -06:00
Tom Scogland
afcf0d2e39
llvm-openmp: make llvm-openmp consistent with other llvm builds (#43165)
Add current versions of the 17 and 18 releases

Stop making it nearly impossible to compose this correctly with code built with gcc

Build for compatibility by default like we do in every other llvm package
2024-03-14 05:34:09 +01:00
dependabot[bot]
29ee861366
build(deps): bump docker/login-action from 3.0.0 to 3.1.0 (#43176)
Bumps [docker/login-action](https://github.com/docker/login-action) from 3.0.0 to 3.1.0.
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](343f7c4344...e92390c5fb)

---
updated-dependencies:
- dependency-name: docker/login-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-03-14 05:27:16 +01:00
John W. Parent
b1a984ef02
msvc: patch property ref bug (#43173) 2024-03-13 22:28:36 +00:00
Christopher Christofi
cc545d8c9a
jags: add version 4.3.2 (#43166) 2024-03-13 23:06:03 +01:00
Ashwin Kumar Karnad
49ff816fb0
octopus: disable gdlib by default (#43161) 2024-03-13 13:04:39 -06:00
Ashwin Kumar Karnad
8c33841567
Add iamashwin99 as a maintainer in Octopus package (#43163) 2024-03-13 12:59:41 -06:00
Ashwin Kumar Karnad
21b50fbbe3
octopus: Support new version octopus@14 (#43160)
* add checksum for octopus 14

* Update dependencies for BerkeleyGW package
2024-03-13 12:59:16 -06:00
Martin Aumüller
2a8e503a04
protobuf: apply centos 8 patch only to @3.4: (#43162)
does not apply cleanly to older versions
2024-03-13 12:54:02 -06:00
Wileam Y. Phan
4b695d4722
rocm-openmp-extras: Fix resource download URLs (#43147)
* rocm-openmp-extras: Fix resource download URLs

* Apply review suggestions
2024-03-13 12:53:46 -06:00
Juan Miguel Carceller
2fa816184e
py-ruff: add version 0.3.0 and deprecate the oldest version (#43069)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-03-13 11:03:28 -07:00
Brian Spilner
25f622e809
update to cdo-2.4.0 (#43071) 2024-03-13 11:01:41 -07:00
吴坎
7506acabe7
antlr4-cpp-runtime: update dependencies (#43115)
* update dependencies

* Update package.py
2024-03-13 11:00:54 -07:00
Dom Heinzeller
3a828358cb
Update var/spack/repos/builtin/packages/ecmwf-atlas/package.py: set correct ectrans/trans variant, configure tesselation variant (#43151) 2024-03-13 10:19:24 -07:00
Adam J. Stewart
94a1d1414a
spack.patch: support reversing patches (#43040)
The `patch()` directive can now be invoked with `reverse=True` to apply a patch in reverse.
This is useful for reverting commits that caused errors in projects, even if only the forward
patch is available, e.g. via a GitHub commit patch URL.

`patch(..., reverse=True)` runs `patch -R` behind the scenes. This is a POSIX option so we
can expect it to be available on the `patch` command.

---------

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-03-12 23:22:10 -07:00
downloadico
0f080b38f4
abinit: add version 9.10.5 (#43148)
set the FC variable to the MPI Fortran compiler and also set the F90 variable
to the same compiler for versions 9.8 and up.  FC needs to be set because the
configure script still uses FC.
2024-03-12 14:04:35 -07:00
Alec Scott
f1ec4859c8
unmaintained packages: add new versions (#43112)
* unmaintained packages: add new versions
* Fix parallel and numactl
* Revert numactl changes
* rollback lua-sol2 version
* Update alluxio version format
2024-03-12 13:34:17 -07:00
Greg Sjaardema
63baba0308
SEACAS: Make latest release available in spack (#43123) 2024-03-12 11:32:32 -07:00
Christopher Christofi
aeec861544
py-art: add new package (#43127) 2024-03-12 11:29:13 -07:00
Christopher Christofi
e54d4678f9
py-lazy-loader: add new version (#43130) 2024-03-12 11:14:17 -07:00
Dom Heinzeller
187b8adb4f
ecmwf-atlas@0.36: depend on ecbuild@3.4: (#43133) 2024-03-12 11:00:15 -07:00
Samuel K. Gutiérrez
d6fd96f024
libquo: Update default version from 1.3.1 to 1.4. (#43057)
Signed-off-by: Samuel K. Gutierrez <samuel@lanl.gov>
2024-03-12 10:28:30 -07:00
Andrey Perestoronin
e3b6d2c3c7
Intel oneapi compilers 2023.2.4 (#43144)
* added intel-oneapi-compilers

* added classics version
2024-03-12 12:54:19 -04:00
Tamara Dahlgren
1e9c46296c
perl testing: refactor stand-alone testing into base class (#43044) 2024-03-12 15:39:18 +01:00
Valentin Volkl
48183b37be
gaudi: add py-yaml dependency (#43116)
Needed to parse job options in yaml format (https://gitlab.cern.ch/gaudi/Gaudi/-/blob/master/GaudiKernel/python/GaudiKernel/ProcessJobOptions.py#L528).
In principle this is optional, but it's needed for the test  35 - GaudiKernel.pytest.nose.test_Configurables (Failed). Seems like there's no harm done in adding this as a full dependency.
2024-03-12 08:58:32 -05:00
Oakley Brunt
9a3d248348
py-psyclone and py-fparser: Add new releases (#42744)
* py-psyclone and py-fparser new releases added

* py-fparser: add missing releases for py-psyclone

* py-psyclone: actioned @adamjstewart comments

* py-psyclone: removed py-pytest-pylint

* py-pytest-pylint: added package @ latest version

* py-pytest-pylint: reformatted

* Update var/spack/repos/builtin/packages/py-psyclone/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-pytest-pylint: added build deps and runtime dep versions

* py-pytest-pylint: removed version from setuptools

* py-psyclone: add py-pytest-pylint test dep and alphabetize deps

* Update var/spack/repos/builtin/packages/py-pytest-pylint/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-psyclone: deps ordered

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-03-12 14:46:48 +01:00
Pierre Blanchard
03e22adb5b
sleef: add v3.6 (#42978) 2024-03-12 11:04:17 +01:00
Massimiliano Culpo
5f5fc78236
Update archspec to v0.2.3 (#42854) 2024-03-12 09:31:15 +01:00
Adam J. Stewart
e12a8a69c7
py-neuralgcm: add new package (#43117)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-03-11 21:02:03 -06:00
Christopher Christofi
001af62585
perl-math-symbolic: add required perl-parse-recdescent dependency (#42157)
* perl-math-symbolic: add required perl-parse-recdescent dependency

* perl-math-symbolic: add new runtime dependency
2024-03-11 17:09:51 -06:00
Christopher Christofi
f5e89df6f2
perl-parsetemplate: add new package (#41845)
* perl-parsetemplate: add new package

* perl-parsetemplate: update to latest copyright date and add license
2024-03-11 17:04:35 -06:00
Massimiliano Culpo
ce75adada6
Fix callbacks accumulation when using mixins with builders (#43100)
fixes #43097

Before this PR the behavior of mixins used together with
builders was to mask completely the callbacks defined from
the class coming later in the MRO.

Here we fix the behavior by accumulating all callbacks,
and de-duplicating them later.
2024-03-11 20:48:21 +01:00