Commit graph

15234 commits

Author SHA1 Message Date
Jennifer Herting
e0e092050c
[py-pygdal] added version 3.0.4.6 (#15973) 2020-04-09 16:58:50 -05:00
noguchi-k
834a520af4
aperture-photometry: add new version (#15967) 2020-04-09 12:04:27 -05:00
Ryan Pepper
f683d714f8
Update doxygen package (#15969)
* Update doxygen package

* Add new version releases 1.8.16 and 1.8.17
* Add mscgen as an optional dependency.

* Update doxygen package.py

Fix typo in mscgen dependency specification

* Remove whitespace for flake8
2020-04-09 12:03:30 -05:00
George Hartzell
1b2638c9b1
primer3: move to github, add 2.5.0, fix 2.3.7 (#15958)
* primer3: move to github, add 2.5.0, fix 2.3.7

- The Primer3 project moved to GitHub.

  - update the URL
  - compare the tarballs 2.3.7 from Sourceforge and github, no
    significant differences (e.g. the Sourceforge tarball contained a
    couple of "tmp" files).
  - update the signature for the 2.3.7 tarball.

- @2.3.7 doesn't build with gcc@8.4.0, there's a dubious pointer/int
  comparison that causes an error.  It was fixed upstream in newer
  versions, apply simple patch to this version so that it continues to
  be build-able with newer compilers.  See:

  - https://github.com/primer3-org/primer3/issues/2
  - https://github.com/primer3-org/primer3/issues/3

- Add info for @2.5.0, which builds cleanly.

* Flake8 cleanup
2020-04-09 11:53:34 -05:00
Sergey Kosukhin
05a80523c8
NetCDF packages: switch to the official FTP server. (#15641) 2020-04-09 09:57:07 -05:00
Jennifer Herting
b75ba93589
New package: gtk-doc (#15768)
* [gtk-doc] created template

* [gtk-doc] using custom url to standardize on dotted version

* [gtk-doc] added description and homepage

* [gtk-doc] added dependencies and added pdf variant

* [gtk-doc] commented out pdf variant

* [gtk-doc] cleaned up leftover fixmes

* [gtk-doc] flake8

* [gtk-doc] readded url

* [gtk-doc] python packages are build and run dependencies
2020-04-09 09:56:33 -05:00
Massimiliano Culpo
e53a98cb4f
papi: check existence of a fortran compiler (#15968)
fixes #5029
2020-04-09 15:33:24 +02:00
vvolkl
5320268033
[podio] add recipe for podio (#15726) 2020-04-09 10:29:19 +01:00
Andrew W Elble
ee0cbd7a17
py-torch: Fix v1.4.0 by adding v1.4.1 (#15761)
* py-torch: Fix v1.4.0 by adding v1.4.1

version/tag hack so that 1.4.0 is still workable.
see pytorch/pytorch#35149

* delete/disable fbgemm support in 1.4.0

* moved conflict
2020-04-09 10:50:08 +02:00
Peter Scheibel
75640f0ed9
NAG compiler fix: skip implicit RPATH detection (#15902)
* Skip collection of compiler link paths if compiler does not define a verbose flag

* modules config bug: allow user to configure a compiler without an explicit entry for loaded modules
2020-04-09 10:48:29 +02:00
darmac
6d8a59be5b
uchardet: added package at v0.6.0 (#15937) 2020-04-09 09:19:52 +02:00
G-Ragghianti
f9c833e078
Papi packge: refactored to inherit from AutotoolsPackage (#15962) 2020-04-09 09:13:35 +02:00
darmac
93a53f1faf
elasticsearch: change depends on from jdk to java (#15964) 2020-04-08 22:35:46 -05:00
Michael Kuhn
3c8bd21dae
glib: Add new stable versions (#15947)
Newer versions of glib require Meson, so this PR adds support for that
using a hybrid approach. glib@5.28: will be built using Meson, older
versions still make use of Autotools.
2020-04-08 22:32:08 -05:00
T.Tian
e96750472e
py-gpaw: Add libvdwxc as variant (#15948)
* Add libvdwxc as variant

* py-gpaw: add missing line for libvdwxc conditions
2020-04-08 22:22:19 -05:00
Aniruddha Marathe
9035dc6b3d
- Fixes build issues. (#15951)
- Updates Kripke URL to its Github repository.
- Adds previous Kripke versions.
- Adds 'caliper' variant.
2020-04-08 22:13:13 -05:00
Andrew W Elble
8abffd4189
py-tensorflow-estimator: fix build (#15953)
Change the build to work again, and be more in line with the other
tensorflow packages. Add version 2.1.
2020-04-08 22:10:37 -05:00
Paul Ferrell
d05f25a4d0
Fixed bad expand option for openjdk versions. (#15956)
The most recent change to the openjdk package set expand=False for all versions
of the package. This means only the unexpanded archive will be installed, which is not correct.
2020-04-08 22:07:00 -05:00
Justin S
4886a2d5ef
py-awesome-slugify: new package at 1.6.5 (#15907)
* py-awesome-slugify: new package at 1.6.5

* py-awesome-slugify: fix typo in version range

* py-awesome-slugify: update dependencies
2020-04-08 21:45:33 -05:00
Nichols A. Romero
bf4eec94ca
F18 update April 2020 (#15930)
* Update dependencies and support variant for Fortran Intermediate Representation.

* Add Cmake flags that toggle Fortran Intermediate Representation on/off. Exclude Flang tests for now.

* f18+fir variant needs next release of llvm or master.

* Only build tests if you are pass in --test to spack install
2020-04-08 20:32:56 -05:00
Andrew W Elble
c5b625ca90
New package: py-tensorboard (#15829)
* New package: py-tensorboard

* some basic dependencies based on requirements.txt
remove the older version that doesn't build

* requested changes

* add additional dependencies

* more dependency changes
2020-04-08 12:46:36 -05:00
Andrew W Elble
c6c53df916
py-onnx: only use py-typing if python < 3.5 (#15931)
* py-onnx: only use py-typing if python < 3.5

avoids a 'Callable has no attribute __abc_registry' error. See
onnx/onnx#2199 and python/typing#573

* add version 1.6.0 while we're here.
2020-04-08 12:46:16 -05:00
iarspider
8ed8bb0a76
MariaDB: added v10.4.12 (#15943) 2020-04-08 14:34:56 +02:00
iarspider
fcf0c6cb68
pytest: added v4.6.9 (#15944) 2020-04-08 14:34:09 +02:00
darmac
62cc8158de
http-parser: added package at v2.9.4 (#15936) 2020-04-08 09:04:01 +02:00
Xavier Delaruelle
4031e9a2a7
environment-modules: add version 4.5.0 (#15938)
Add new version 4.5.0 and update quarantine variable list to also
include LD_PRELOAD in addition to LD_LIBRARY_PATH (to avoid side-effect
when the first depends on the latter).
2020-04-08 09:01:22 +02:00
George Hartzell
66cec5a151
Update hugo version and add extended variant (#15933)
- Add info for version 0.68.3
- Add variant to package that enables the "extended" features.  It
  works with both of the existing versions (not sure how far back it
  goes, but confirmed that it's valid fro 0.53).

Tested on OS X with go@1.14.1.
2020-04-07 22:27:23 -05:00
darmac
e16593e551
Add new package: open-isns (#15914)
* Add new package: open-isns

* refine args
2020-04-07 22:27:04 -05:00
Justin S
998dc7a121
py-cyvcf2: new package at 0.11.7 (#15908)
* py-cyvcf2: new package at 0.11.7

* py-cyvcf2: update dependencies
2020-04-07 20:41:18 -05:00
Justin S
7927394fb3
py-yahmm: new package at 1.1.3 (#15909)
* py-yahmm: new package at 1.1.3

* py-yahmm: update dependencies
2020-04-07 20:41:01 -05:00
Justin S
233fc5ff23
py-unidecode: new package at 1.1.1 (#15906)
* py-unidecode: new package at 1.1.1

* py-unidecode: update py-setuptools dep type

* py-unidecode: add python version
2020-04-07 20:40:33 -05:00
Justin S
9b33788573
py-utils: new package at 1.0.1 (#15904)
* py-utils: new package at 1.0.1

* py-utils: update py-setuptools dep type

* py-utils: fix dependency condition
2020-04-07 20:39:39 -05:00
Justin S
cc4bf086b9
py-args: new package at 0.1.0 (#15903)
* py-args: new package at 0.1.0

* py-args: update dependencies
2020-04-07 20:39:03 -05:00
Massimiliano Culpo
fb0bcf4127
openfoam: modified flex to be a build + link dependency (#15917)
fixes #15863

Since openfoam-org needs FlexInclude.h "flex" needs to
be also a link dependency.
2020-04-07 17:04:54 -05:00
ktsai7
0ac77b815f
update gasnet spackage cmake args (#15920)
* update gasnet spackage cmake args

* fix style errors

* trailing whitespace
2020-04-07 17:03:32 -05:00
Benjamin Tovar
0074995ecf
updates CCTools to version 7.1.2 (#15923) 2020-04-07 17:03:18 -05:00
Nichols A. Romero
46bcbac719
Make use of Spack's builtin CUDA build system. (#15924) 2020-04-07 17:02:38 -05:00
Robert Pavel
36f7def307
Addded Draco@7.5.0:7.6.0 (#15926)
Updated version hashes for draco spackage to specify 7.5 and 7.6
2020-04-07 17:01:06 -05:00
George Hartzell
153c888432
Fix lua build, missing deref of self for spec (#15927)
Looks like something changed and a case was missed.

Function doesn't have a spec arg, need to dereference it off of
self.

Builds on OS X.
2020-04-07 17:00:53 -05:00
Satish Balay
45fe9add2e
update versions: petsc4py@3.13.0 and slepc4py@3.13.0 (#15928) 2020-04-07 17:00:34 -05:00
Hadrien G
b405278c43
[acts-core] Add version 0.21 (#15922)
* Add ACTS v0.21

* Update var/spack/repos/builtin/packages/acts-core/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-07 17:00:01 -05:00
Scott Wittenburg
de95a9f5f3 pipelines: Document dynamic generation limitations 2020-04-07 15:20:01 -06:00
Carson Woods
fc19f7de6c
ucx: add additional variants (#15925)
* Add more variants to ucx

* Fix flake8 issue
2020-04-07 15:18:40 -05:00
Jose E. Roman
fb841877c5
slepc 3.13 develop updates (#15897)
* slepc: updates for @devel

-  +arpack now works with int64
-  +blopex add conflict with int64
-  switch to using --with-arpack-lib [from --with-arpack-lib] with current slepc
-  use updated blopex with current slepc

* slepc: conflict with blopex should be in all versions

* slepc: add new downloads

* slepc: add whitespace around operator

Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2020-04-07 15:13:32 -05:00
Andrew W Elble
dd463272e6
New package(s): py-pydeps and py-stdlib-list (#15828)
* New package(s): py-pydeps and py-stdlib-list

* requested changes

* Update var/spack/repos/builtin/packages/py-stdlib-list/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-07 13:59:24 -05:00
darmac
cb9c86e526
Add new package: shark (#15913) 2020-04-07 11:57:21 -05:00
Mark Olesen
8b275080ea
update OpenFOAM patch versions (#15916)
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-04-07 11:57:07 -05:00
Massimiliano Culpo
2dece3aee8
cryptsetup: restrict the version of automake if @2.2.1 (#15918)
* cryptsetup: restrict the version of automake if @2.2.1

fixes #15706

* Update var/spack/repos/builtin/packages/cryptsetup/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-07 11:56:54 -05:00
Themos Tsikas
375e1c62c7
NAG Compiler 7.0 (Build 7014) download checksum (#15899)
* NAG Compiler 7.0 (Build 7009) download checksum

* NAG Compiler 7.0 (Build 7014) download checksum
2020-04-07 11:38:11 -05:00
Jennifer Herting
e34ea80d52
New package: boinc-client (#15770)
* [boinc-client] Created template

* [boinc-client] removed non-client version

* [boinc-client] added description and homepage

* [boinc-client] specifically specify this as a client release

* [boinc-client] added dependencies

* [boinc-client] added variant: manager

* [boinc-client] added graphics variant

* [boinc-client] added dependency version specificity

* [boinc-client] systemd install path fix

* [boinc-client] added sqlite dependency

* [boinc-client] flake8

* [boinc-client] cleaned up left over fixme
2020-04-07 11:21:49 -05:00