Commit graph

30849 commits

Author SHA1 Message Date
Chris Green
d01b542df7
[py-breathe] New version 4.35.0 (#37233)
* [py-breathe] New version 4.35.0

* Update var/spack/repos/builtin/packages/py-breathe/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-04-27 13:57:31 -04:00
Thomas-Ulrich
c59eb8cdea
fixes #29350 by enabling headers variant in binutils when compiling llvm with gold (#37245) 2023-04-27 09:53:45 -07:00
Manuela Kuhn
ed34c4a004
py-memory-profiler: add 0.61.0 (#37248) 2023-04-27 11:38:08 -05:00
Chris Green
7cbaf2ff56
[py-sphinx-design] New versions 0.4.0, 0.4.1 (#37234)
* [py-sphinx-design] New versions 0.4.0, 0.4.1

* conflicts() -> depends_on()

Per @adamjstewart

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-04-27 11:37:23 -05:00
Massimiliano Culpo
cd851e173d
gcc: add v13.1.0 (#37230)
version 13.1 builds with apple-clang@14.0.3
2023-04-27 16:41:44 +02:00
Harmen Stoppels
8be2f017e7
gcc: no need to special case macos/linux wrt rpaths (#37243) 2023-04-27 15:52:28 +02:00
Michael Kuhn
f6464abfcb
Fix pkgconfig dependencies (#37236)
Packages shouldn't typically depend on pkg-config or pkgconf but on the
virtual provider pkgconfig.
2023-04-27 10:04:22 +02:00
Alec Scott
ce81f15e6f
r-covr: add v3.6.2 (#37194) 2023-04-27 02:22:29 -04:00
Wouter Deconinck
4d597bdecc
py-gssapi: depends_on krb5 (#37227)
This dependency was somehow overlooked (but is pretty crucial) because it doesn't appear in the python requirements...
2023-04-26 22:35:15 -04:00
Manuela Kuhn
62ea6bed89
py-bidscoin: add 4.0.0 and py-pydeface as new deb package (#37231) 2023-04-26 20:58:57 -04:00
Manuela Kuhn
742fbd458d
py-mypy: add 1.2.0 (#37224) 2023-04-26 20:54:11 -04:00
Manuela Kuhn
10b6651d35
py-flake8: add 6.0.0 and update dependencies (#37222) 2023-04-26 20:53:49 -04:00
Alec Scott
3f3fc804c6
r-afex: add v1.2-1 (#37188) 2023-04-26 19:36:53 -05:00
Alec Scott
c7d586d03a
r-argparse: add v2.2.2 (#37189) 2023-04-26 19:36:11 -05:00
Alec Scott
b17feb9b06
r-bit: add v4.0.5 (#37190) 2023-04-26 19:35:30 -05:00
Alec Scott
2e4a9f1abf
r-loo: add v2.6.0 (#37205)
* r-loo: add v2.6.0

* Split r dependency from other deps to align with common r package style
2023-04-26 19:34:19 -05:00
Alec Scott
117d374a61
r-bookdown: add v0.33 (#37191)
* r-bookdown: add v0.33

* Add r@3.5.0: dependency to package
2023-04-26 19:33:18 -05:00
Alec Scott
67cf37d750
r-compositions: add v2.0-6 (#37192)
* r-compositions: add v2.0-6

* Split r dependecies from other r packages to match common format
2023-04-26 19:32:15 -05:00
Alec Scott
6e276ecb4c
r-convevol: add v2.0.0 (#37193) 2023-04-26 19:31:34 -05:00
Alec Scott
8c6a3f15e5
r-desolve: add v1.35 (#37195) 2023-04-26 19:29:14 -05:00
Alec Scott
65bbd2a1e6
r-fastmap: add v1.1.1 (#37196) 2023-04-26 19:27:49 -05:00
Alec Scott
426f8e987b
r-formatr: add v1.14 (#37197) 2023-04-26 19:27:11 -05:00
Alec Scott
a78e061117
r-ggvis: add v0.4.8 (#37198) 2023-04-26 19:26:24 -05:00
Alec Scott
17e14757e2
r-glmnet: add v4.1-7 (#37199)
* r-glmnet: add v4.1-7

* Split r dependency from other deps to follow common format
2023-04-26 19:25:42 -05:00
Alec Scott
2bb3553f24
r-insight: add v0.19.1 (#37200) 2023-04-26 19:24:55 -05:00
Alec Scott
6267a1f68d
r-interp: add v1.1-4 (#37201)
* r-interp: add v1.1-4

* split r dep from other dependencies to match common format
2023-04-26 19:24:08 -05:00
Alec Scott
666ceb998c
r-jomo: add v2.7-6 (#37202) 2023-04-26 19:23:09 -05:00
Alec Scott
e4cc4018c1
r-lattice: add v0.21-8 (#37204)
* r-lattice: add v0.21-8

* Enforce a higher version of R as according to cran
2023-04-26 19:12:26 -05:00
Alec Scott
5551b7a506
r-magic: add v1.6-1 (#37206) 2023-04-26 19:06:27 -05:00
Alec Scott
facc93a30e
r-maptools: add v1.1-6 (#37207) 2023-04-26 19:05:29 -05:00
Alec Scott
b3101d1c85
r-meta: add v6.2-1 (#37208) 2023-04-26 19:04:07 -05:00
H. Joe Lee
0d7890baa5
spdk: add a new package (#35520)
* spdk: add a new package
* chore: fix formatting and style
* fix: add rdma-core dependency
* fix: remove spdk < 23.01 versions per @soumagne review
* spdk: add 22.01.1 version
* spdk: address @soumagne reviews
* spdk: fix fio audit failure
* spdk: fix fio version and remove debugging info
2023-04-26 16:38:14 -07:00
Wouter Deconinck
d43ae9fa10
scitokens-cpp: depends_on pkgconfig (#37168)
A missing dependency, showing up as:
```console
#24 1113.1 3 errors found in build log:
#24 1113.1      20    -- Check for working CXX compiler: /opt/spack/lib/spack/env/gcc/g++ 
#24 1113.1            - skipped
#24 1113.1      21    -- Detecting CXX compile features
#24 1113.1      22    -- Detecting CXX compile features - done
#24 1113.1      23    -- Found CURL: /opt/software/linux-debian-x86_64_v3/gcc-12.2.0/curl-
#24 1113.1            7.85.0-ca5zznsdkp2hwbnikha6sgqzcpuw74sc/lib/libcurl.so (found versio
#24 1113.1            n "7.85.0")
#24 1113.1      24    -- Found UUID : /opt/software/linux-debian-x86_64_v3/gcc-12.2.0/util
#24 1113.1            -linux-uuid-2.38.1-45xrjgjjauvev5qarwji7xgmlnhqlzkh/lib/libuuid.so
#24 1113.1      25    -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE)
#24 1113.1   >> 26    CMake Error at /opt/software/linux-debian-x86_64_v3/gcc-12.2.0/cmake
#24 1113.1            -3.24.3-6doi3daa6ihw6mk4zbk5oiiuiaahsny7/share/cmake-3.24/Modules/Fi
#24 1113.1            ndPkgConfig.cmake:663 (message):
#24 1113.1      27      pkg-config tool not found
#24 1113.1      28    Call Stack (most recent call first):
#24 1113.1      29      /opt/software/linux-debian-x86_64_v3/gcc-12.2.0/cmake-3.24.3-6doi3
#24 1113.1            daa6ihw6mk4zbk5oiiuiaahsny7/share/cmake-3.24/Modules/FindPkgConfig.c
#24 1113.1            make:829 (_pkg_check_modules_internal)
#24 1113.1      30      CMakeLists.txt:39 (pkg_check_modules)
#24 1113.1      31    
#24 1113.1      32    
```

Ref: https://github.com/scitokens/scitokens-cpp/blob/v1.0.0/CMakeLists.txt#L32
2023-04-27 00:02:55 +02:00
Trevor [LAS]
055e5abc93
py-ipyrad (#37160)
* Adding py-ipyrad for testing

* py-ipyrad: placating flake8

* py-ipyrad: adding version 0.9.90, fixing hard coded path.

* py-ipyrad: use join_path instead of hard coded linux path

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-ipyrad: Removing unneeded dependencies

* py-ipyrad: Readded future (see ipyrad setup.py)

* py-ipyrad: Switch to an anchored link in the docs

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-ipyrad: Removed patch decorator

---------

Co-authored-by: snehring <snehring@iastate.edu>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-04-26 17:04:57 -04:00
Michael Kuhn
16f86c7f96
rocksdb: add 8.1.1 (#37169) 2023-04-26 10:07:42 -07:00
Michael Kuhn
0292568f97
libbson, mongo-c-driver: add 1.23.3 (#37175) 2023-04-26 10:05:45 -07:00
Gerhard Theurich
61c24dc7c3
esmf: add v8.4.2 (#37183) 2023-04-26 10:03:13 -07:00
Alec Scott
cbb8900e6e
genrich: add v0.6.1 (#37184) 2023-04-26 10:01:59 -07:00
Alec Scott
6084b9be5b
openwsman: add v2.7.2 (#37186) 2023-04-26 09:59:21 -07:00
Alec Scott
e4eba24191
shortstack: add v4.0.1 (#37187) 2023-04-26 09:58:27 -07:00
Alec Scott
aa0b013efe
abyss: add v2.3.5 (#37209) 2023-04-26 09:28:48 -07:00
Alec Scott
9d49664679
advancecomp: add v2.5 (#37210) 2023-04-26 09:26:04 -07:00
Alec Scott
8c4bd595f3
barrnap: add v0.9 (#37212) 2023-04-26 09:19:27 -07:00
Alec Scott
8669844084
check: add v0.15.2 (#37216) 2023-04-26 09:18:49 -07:00
Alec Scott
2477fe2ff7
bowtie: add v1.3.1 (#37213) 2023-04-26 09:18:04 -07:00
Alec Scott
3f7ea01e9d
faiss: add v1.7.4 (#37217) 2023-04-26 09:15:52 -07:00
Alec Scott
c334a16a2f
nanoflann: add v1.4.3 (#37218) 2023-04-26 09:13:52 -07:00
Alec Scott
4fec857504
pestpp: add v5.2.3 (#37219) 2023-04-26 09:12:52 -07:00
Alec Scott
f859da6119
rinetd: add v0.73 (#37220) 2023-04-26 09:11:37 -07:00
Alec Scott
1c19eccf29
specfem3d-globe: add v8.0.0 (#37221) 2023-04-26 09:10:22 -07:00