Commit graph

6339 commits

Author SHA1 Message Date
dependabot[bot]
3f83ef6566
build(deps): bump flake8 from 6.0.0 to 6.1.0 in /lib/spack/docs (#39366)
Bumps [flake8](https://github.com/pycqa/flake8) from 6.0.0 to 6.1.0.
- [Commits](https://github.com/pycqa/flake8/compare/6.0.0...6.1.0)

---
updated-dependencies:
- dependency-name: flake8
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-10 05:34:33 -04:00
dependabot[bot]
554ce7f063
build(deps): bump sphinx-design from 0.4.1 to 0.5.0 in /lib/spack/docs (#39367)
Bumps [sphinx-design](https://github.com/executablebooks/sphinx-design) from 0.4.1 to 0.5.0.
- [Release notes](https://github.com/executablebooks/sphinx-design/releases)
- [Changelog](https://github.com/executablebooks/sphinx-design/blob/main/CHANGELOG.md)
- [Commits](https://github.com/executablebooks/sphinx-design/compare/v0.4.1...v0.5.0)

---
updated-dependencies:
- dependency-name: sphinx-design
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-10 05:29:52 -04:00
Aiden Grossman
23963779f4
Prefix conflict messages with package name (#39106)
* Prefix conflict messages with package name

This patch prefixes all conflict messages with the package name to
alleviate what was otherwise a very manual process. Note that this patch
is a one line change but has a fairly outsized impact.

* same for requires directive

---------

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-08-10 08:09:00 +00:00
Ricard Zarco Badia
45c5af10c3
Fixed broken calls to _if_ninja_target_execute (#38992)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-08-10 09:34:02 +02:00
Harmen Stoppels
532a37e7ba
Revert "Spec versions: allow git. references for branches with / (#38239)" (#39354)
This reverts commit 3453259c98.
2023-08-10 08:56:39 +02:00
dependabot[bot]
a3c7ad7669
build(deps): bump urllib3 from 2.0.3 to 2.0.4 in /lib/spack/docs (#39002)
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.3 to 2.0.4.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.3...2.0.4)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-10 05:04:58 +00:00
markus-ferrell
01b7cc5106
Windows: enable more stage tests (#36834)
Enable some already-supported tests (no changes to staging logic).
2023-08-09 14:24:30 -07:00
Andrey Parfenov
b1e33ae37b
add info about devito and qe for intel env (#39357)
Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
2023-08-09 12:47:35 -04:00
Jordan Galby
c36617f9da
Fix package.py error handling bug (#39017) 2023-08-09 17:47:43 +02:00
dependabot[bot]
deadb64206
build(deps): bump black from 23.1.0 to 23.7.0 in /lib/spack/docs (#38982)
Bumps [black](https://github.com/psf/black) from 23.1.0 to 23.7.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.1.0...23.7.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-09 17:19:49 +02:00
Harmen Stoppels
8e7c53a8ba
package import: remove magic import line (#39183) 2023-08-09 14:28:06 +00:00
Adam J. Stewart
39d4c402d5
Fix suffix of tab completion scripts (#39154) 2023-08-09 08:28:55 -05:00
Harmen Stoppels
e51748ee8f
zlib-api: new virtual with zlib/zlib-ng as providers (#37372)
Introduces a new virtual zlib-api, which replaces zlib in most packages.

This allows users to switch to zlib-ng by default for better performance.
2023-08-09 09:22:58 -04:00
Jonathon Anderson
9aa3b4619b
containerize: ensure bootstrap images contain all system dependencies (#36818)
This also makes `spack bootstrap status` exit 1 if some dependency is missing
2023-08-09 09:46:59 +02:00
Peter Scheibel
3453259c98
Spec versions: allow git. references for branches with / (#38239) 2023-08-09 09:07:04 +02:00
Massimiliano Culpo
97d632a161
Push conflict between rocm and blt down to packages that actually use blt (#39339) 2023-08-09 07:53:17 +02:00
Adam J. Stewart
361632fc4b
Ensure that all variants have a description (#39025)
* Ensure that all variants have a description

* Update mock packages too

* Fix test invocations

* Black fix

* mgard: update variant descriptions

* flake8 fix

* black fix

* Add to audit tests

* Relax type hints

* Older Python support

* Undo all changes to mock packages

* Flake8 fix
2023-08-08 09:29:49 -05:00
simonLeary42
6576655137
Name clash error message include hash of clashing packages (#39234)
Co-authored-by: Simon <simonleary@umass.edu>
2023-08-08 14:36:49 +02:00
Harmen Stoppels
86f9d3865b
Fix broken inode assertion (#39188) 2023-08-08 09:21:23 +02:00
Harmen Stoppels
7bd5d1fd3c
use {%compiler.name}{@compiler.version} in matching_specs (#39247) 2023-08-07 18:54:10 +02:00
Massimiliano Culpo
ba1d295023
Extract prefix locks and failure markers from Database (#39024)
This PR extracts two responsibilities from the `Database` class:
1. Managing locks for prefixes during an installation
2. Marking installation failures

and pushes them into their own class (`SpecLocker` and `FailureMarker`). These responsibilities are also pushed up into the `Store`, leaving to `Database` only the duty to manage `index.json` files.

`SpecLocker` classes no longer share a global list of locks, but locks are per instance. Their identifier is simply `(dag hash, package name)`, and not the spec prefix path, to avoid circular dependencies across Store / Database / Spec.
2023-08-07 06:47:52 -04:00
Harmen Stoppels
27f04b3544
Picklable HTTPError (#39285) 2023-08-07 10:48:35 +02:00
Harmen Stoppels
ef544a3b6d
Add a more detailed HTTPError (#39187) 2023-08-05 11:16:51 +02:00
Adam J. Stewart
4eed832653
py-pyqt6: add new package (#32696) 2023-08-04 18:49:54 -05:00
Harmen Stoppels
6e933ac7df
repo cache: use -inf default instead of 0 (#39214)
FastPackageChecker.modified_since should use a default number < 0

When the repo cache does not exist, Spack uses mtime 0. This causes the repo
cache not to be generated when the repo has mtime 0.

Some popular package managers such as spack use 0 mtime normalization for
reproducible tarballs. So when installing spack with spack from a buildcache, the
repo cache doesn't generate

Also add some typehints
2023-08-03 14:13:13 +02:00
Harmen Stoppels
2069a42ba3
Buildcache commands cleanup, again... (#39203)
* Inform mypy that tty.die is noreturn

* avoid temporary allocation in env

* update spack buildcache save-specfile

* fix spack buildcache check/download/get-buildcache-name

- ensure that required args and mutually exclusive ones are marked as
  such in argparse for better error messages
- deprecate --spec-file everywhere
- use disambiguate for better error messages
2023-08-03 10:44:02 +02:00
Adam J. Stewart
edbf12cfa8
Add qmake virtual provider (#38848) 2023-08-02 13:50:37 -05:00
kwryankrattiger
0b4631a774
CI: Refactor ci reproducer (#37088)
* CI: Refactor ci reproducer

* Autostart container
* Reproducer paths match CI paths
* Generate start scripts for docker and reproducer

* CI: Add interactive and gpg options to reproduce-build

* Interactive will determine if the docker container persists
  after running reproduction.
* GPG path/url allow downloading GPG keys needed for binary
  cache download validation. This is important for running
  reproducer for protected CI jobs.

* Add exit_on_failure option to CI scripts

* CI: Add runtime option for reproducer
2023-08-02 09:51:12 -07:00
Harmen Stoppels
e7fa6d99bf
version: move to module, avoid circular imports (#39077) 2023-08-02 17:47:08 +02:00
Harmen Stoppels
03c0d74139
buildcache extractall: extract directly into spec.prefix (#37441)
- Run `mkdirp` on `spec.prefix`
- Extract directly into `spec.prefix`
  1. No need for `$store/tmp.xxx` where we extract the tarball directly, pray that it has one subdir `<name>-<version>-<hash>`, and then `rm -rf` the package prefix followed by `mv`.
  2. No need to clean up this temp dir in `spack clean`.
  3. Instead figure out package directory prefix from the tarball contents, and strip the tarinfo entries accordingly (kinda like tar --strip-components but more strict)
- Set package dir permissions
- Don't error during error handling when files cannot removed
- No need to "enrich" spec.json with this tarball-toplevel-path

After this PR, we can in fact tarball packages relative to `/` instead of `spec.prefix/..`, which makes it possible to use Spack tarballs as container layers, where relocation is impossible, and rootfs tarballs are expected.
2023-08-02 17:06:13 +02:00
Wouter Deconinck
a14f4b5a02
feat: move -N/--namespace(s) to common args, allow in buildcache list (#36719)
`spack buildcache list` did not have a way to display the namespace of
packages in the buildcache. This PR adds that functionality.

For consistency's sake, it moves the `-N/--namespace` arg definition to
the `common/arguments.py` and modifies `find`, `solve`, `spec` to use
the common definition.

Previously, `find` was using `--namespace` (singular) to control whether
to display the namespace (it doesn't restrict the search to that
namespace). The other commands were using `--namespaces` (plural). For
backwards compatibility and for consistency with `--deps`, `--tags`,
etc, the plural `--namespaces` was chosen. The argument parser ensures
that `find --namespace` will continue to behave as before.

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-08-02 11:16:14 +00:00
Chris White
8d2a32f66d
remove CMAKE_GENERATOR from the host-config because it cannot be overwritten on the command line (#39044) 2023-08-01 08:57:56 -07:00
Alec Scott
d4f41b51f4
Add spack checksum --verify, fix --add (#38458)
* Add rewrite of spack checksum to include --verify and better add versions to package.py files
* Fix formatting and remove unused import
* Update checksum unit-tests to correctly test multiple versions and add to package
* Remove references to latest in stage.py
* Update bash-completion scripts to fix unit tests failures
* Fix docs generation
* Remove unused url_dict argument from methods
* Reduce chance of redundant remote_versions work
* Add print() before tty.die() to increase error readablity
* Update version regular expression to allow for multi-line versions
* Add a few unit tests to improve test coverage
* Update command completion
* Add type hints to added functions and fix a few py-lint suggestions
* Add @no_type_check to prevent mypy from failing on pkg.versions
* Add type hints to format.py and fix unit test
* Black format lib/spack/spack/package_base.py
* Attempt ignoring type errors
* Add optional dict type hint and declare versions in PackageBase
* Refactor util/format.py to allow for url_dict as an optional parameter
* Directly reference PackageBase class instead of using TypeVar
* Fix comment typo

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2023-07-31 21:49:43 +00:00
Adam J. Stewart
9394fa403e
Remove Xcode mock-up (#39020)
* Remove Xcode mock-up

* Remove unused imports
2023-07-31 10:24:04 -07:00
Scott Wittenburg
2c74b433aa
ci: Make signing requirement explicit (#38995)
Instead of inferring whether to sign binaries, make it explicit,
and fail rebuild jobs early if signing is required but cannot be
accomplished.
2023-07-26 09:16:15 -06:00
Jonathon Anderson
3ad65bbfc1
Always set workflow:rules in spack ci pipelines (#38921) 2023-07-24 14:31:39 -05:00
Ashwin Kumar Karnad
399271832b
Fix typo: binary_caches.rst (#39064) 2023-07-24 15:09:34 +02:00
Harmen Stoppels
4bcceddba9
Don't add .spack/binary_distribution twice to the tarball when re-distributing (#39042)
Previously, spack would list the ./spack/binary_distribution file twice when pushing
a package that was installed from a binary tarball itself.
2023-07-24 14:39:37 +02:00
Harmen Stoppels
0fff219aa4
Fix broken sanitize_file_path (#38926)
The sanitization function is completely bogus as it tries to replace /
on unix after ... splitting on it. The way it's implemented is very
questionable: the input is a file name, not a path. It doesn't make
sense to interpret the input as a path and then make the components
valid -- you'll interpret / in a filename as a dir separator.

It also fails to deal with path components that contain just unsupported
characters (resulting in empty component).

The correct way to deal with this is to have a function that takes a
potential file name and replaces unsupported characters.

I'm not going to fix the other issues on Windows, such as reserved file
names, but left a note, and hope that @johnwparent can fix that
separately.

(Obviously we wouldn't have this problem at all if we just fixed the
filename in a safe way instead of trying to derive something from
the url; we could use the content digest when available for example)
2023-07-24 12:30:47 +02:00
百地 希留耶
90ac0ef66e
Implement fish completion (#29549)
* commands: provide more information to Command

* fish: Add script to generate fish completion

* fish: auto prepend `spack` command to avoid duplication

* fish: impove completion generation code readability

* commands: replace match-case with if-else

* fish: fix optspec variable name prefix

* fish: fix return value in get_optspecs

* fish: fix return value in get_optspecs

* format: split long line and trim trailing space

* bugfix: replace f-string with interpolation

* fish: compete more specs and some fixes

* fish: complete hash spec starts with /

* fish: improve compatibility

* style: trim trailing whitespace

* commands: add fish to update args and update tests

* commands: add fish completion file

* style: merge imports

* fish: source completion in setup-env

* fish: caret only completes dependencies

* fish: make sure we always get same order of output

* fish: spack activate
only show installed packages that have extensions

* fish: update completion file

* fish: make dict keys sorted

* Blacken code

* Fix bad merge

* Undo style changes to setup-env.fish

* Fix unit tests

* Style fix

* Compatible with fish_indent

* Use list for stability of order

* Sort one more place

* Sort more things

* Sorting unneeded

* Unsort

* Print difference

* Style fix

* Help messages need quotes

* Arguments to -a must be quoted

* Update types

* Update types

* Update types

* Add type hints

* Change order of positionals

* Always expand help

* Remove shared base class

* Fix type hints

* Remove platform-specific choices

* First line of help only

* Remove unused maps

* Remove suppress

* Remove debugging comments

* Better quoting

* Fish completions have no double dash

* Remove test for deleted class

* Fix grammar in header file

* Use single quotes in most places

* Better support for remainder nargs

* No magic strings

* * and + can also complete multiple

* lower case, no period

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-22 08:55:12 -05:00
Massimiliano Culpo
c0b42151c3
Remove spack.repo.IndexError (#39029)
This exception is never used and
overrides a built-in.
2023-07-21 15:33:30 +02:00
Ashwin Kumar Karnad
405f563909
binary_caches.rst: fix typo (#39030) 2023-07-21 10:39:53 +02:00
Sergey Kosukhin
d2566e3d62
nag: update the versioning scheme (#35457)
* nag: append build number to the version
* nag: add version 7.1.7125
* nag: deprecate unavailable versions
2023-07-20 12:03:26 -07:00
Massimiliano Culpo
50b90e430d
spack.util.lock: add type-hints, remove **kwargs in method signatures (#39011) 2023-07-20 09:41:23 +02:00
Massimiliano Culpo
3a565c66e9
Respect custom user store when bootstrapping (#39001)
The user store is lazily evaluated. The change
in #38975 made it such that the first evaluation
was happening in the middle of swapping to user
configuration.

Ensure we construct the user store before that.
2023-07-19 19:53:33 -04:00
Xavier Delaruelle
d9fbdfbee9
modules: use curly braces to enclose value in Tcl modulefile (#38375)
Use curly braces instead of quotes to enclose value or text in Tcl
modulefile. Within curly braces Tcl special characters like [, ] or $
are treated verbatim whereas they are evaluated within quotes.

Curly braces is Tcl recommended way to enclose verbatim content [1].

Note: if curly braces charaters are used within content, they must be
balanced. This point has been checked against current repository and no
unbalanced curly braces has been spotted.

Fixes #24243

[1] https://wiki.tcl-lang.org/page/Tcl+Minimal+Escaping+Style
2023-07-19 17:57:37 +02:00
Harmen Stoppels
185bccb70f
Fetch & patch: actually acquire stage lock, and many more issues (#38903)
* Fetching patches wouldn't result in acquiring a stage lock during install
* The installer would acquire a stage lock *after* fetching instead of
   before, leading to races
* The name of the stage for patches was random, so on build failure
   (where stage dirs are not removed), these directories would continue
   to exist after a second successful install.
* There was this redundant "composite fetch" object -- there's already
   a composite stage. Remove this.
* For some reason we do *double* shasum validation of patches, before
   and after compression -- that's just too much? I removed it.
2023-07-19 15:06:56 +02:00
Harmen Stoppels
886946395d
drop redundant rpaths post install (#38976)
Spack heuristically adds `<install prefix>/lib` and `<install prefix>/lib64` as rpath entries, as it doesn't know what the install dir is going to be ahead of the build. This PR cleans up non-existing, absolute paths[^1], which

1. avoids redundant stat calls at runtime
2. drops redundant rpaths in `patchelf`, making it relocatable -- you don't need patchelf recursively then.

[^1]: It also removes relative paths not starting with `$` (so, `$ORIGIN/../lib` is retained -- we _could_ interpolate `$ORIGIN`, but that's hard to get right when symlinks have to be taken into account). Relative paths _are_ supported in glibc, but are relative to _the current working directory_, which is madness, and it would be better to drop those paths.
2023-07-19 09:48:31 +00:00
Massimiliano Culpo
f34c93c5f8
llnl.util.lock: add type-hints (#38977)
Also uppercase global variables in the module
2023-07-19 11:23:08 +02:00
Massimiliano Culpo
a7f2abf924
Remove LazyReference from code (#38944)
A LazyReference object is a reference to an attribute of a 
lazily evaluated singleton. Its only purpose is to let developers
use shorter names to refer to such attribute.

This class does more harm than good, as it obfuscates the fact
that we are using the attribute of a global object. Also, it can easily
go out of sync with the singleton it refers to if, for instance, the
singleton is updated but the references are not.

This commit removes the LazyReference class entirely, and access
the attributes explicitly passing through the global value to which
they are attached.
2023-07-19 11:08:51 +02:00