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Author SHA1 Message Date
lingnanyuan
89b30bea7f r-a4preproc: Create new package. (#5499) 2017-09-29 15:27:20 -06:00
Massimiliano Culpo
554937780b modules: specialized configure_options for external packages (#5543) 
closes #5473

Prior to this PR we were not exiting early for external packages, which
caused the `configure_options` property of the contexts to fail with
e.g. a key error because the DAG gets truncated for them. More
importantly Spack configure options don't make any sense for externals.

Now we exit early, and leave a message in the module file clarifying
that this package has been installed outside of Spack.
 2017-09-29 09:23:13 -07:00
Yifan Zhu
a63fdc8f35 r-dbi: updated to version 0.7 (#5537) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-dbi: Create new package.

* r-dbi: modified according to flake8

* Update package.py

* Update package.py
 2017-09-28 22:14:56 -06:00
lingnanyuan
aab68aaecf r-gdata: Update version to 2.18.0 (#5495) 2017-09-28 18:13:06 -07:00
Mark C. Miller
e851d15974 fixing tag name for development branch (#5496) 2017-09-28 18:12:02 -07:00
Yifan Zhu
aee44efada r-biostrings: created new package (#5498) 2017-09-28 18:11:28 -07:00
Yifan Zhu
b455fa2a7b r-gcrma: created new package (#5500) 2017-09-28 18:11:02 -07:00
Yifan Zhu
e42fd90df2 r-yaqcaffy: created new package (#5538) 2017-09-28 18:02:58 -07:00
Jon Rood
5e3024368e Add metaphysicl package (#5539) 
* Adding package Metaphysicl.

* Removing list_url from metaphysical package.
 2017-09-28 18:02:07 -07:00
Jon Rood
90e4b56362 Adding masa package. (#5541) 2017-09-28 18:01:38 -07:00
Yifan Zhu
6d63be9eb6 r-rlang: created new package (#5535) 2017-09-28 16:07:13 -06:00
Christoph Junghans
337256ee32 tycho2: initial commit (#5196) 2017-09-28 14:48:54 -07:00
Mark Olesen
aff6148116 Restrict openfoam to using openmpi+thread_multiple (partially resolves #5428) (#5479) 
- latest version requires openmpi+thread_multiple for collated output.
 2017-09-28 14:42:14 -06:00
Michael Kuhn
97bc86d617 snappy: Build shared library by default (#5534) 2017-09-28 14:18:50 -06:00
lingnanyuan
aa40509fa0 r-ggvis: Update version to 0.4.3 (#5532) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-ggvis: Update version to 0.4.3

* Update package.py

* Update package.py
 2017-09-28 13:13:47 -06:00
lingnanyuan
0962088776 r-dplyr: Update version to 0.7.3 (#5531) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-dplyr: Update version to 0.7.3

* Update package.py

* Update package.py
 2017-09-28 13:09:30 -06:00
Michael Kuhn
ac98e0978a ncl: Add tcsh dependency (#5195) 
All ncl scripts hardcode /bin/csh, so fix them up.
 2017-09-28 12:51:04 -06:00
Michael Kuhn
17be89c210 tcsh: New package (#5194) 
The patches are taken from the Fedora package.
 2017-09-28 12:50:52 -06:00
lingnanyuan
0bc3578dac r-annaffy: new package. (#5414) 
* r-annaffy: Create New Package.

* r-annaffy: Create new package.

* r-go-db: Create new package.

* r-kegg-db: Create new package.

* r-annaffy: Correct indentation.

* r-go-db: Correct indentation.

* r-kegg-db: Correct format.

* r-kegg-db: Correct format.

* r-go-db: Correct format.

* r-annaffy: Correct format.
 2017-09-28 12:49:31 -06:00
Audrey Thoma
3f44eb0179 fastq-screen: new package (#5431) 
* fastq-screen: new package

* fixing descriptions and previously made packages' old copyright date

* added wrong perl package after change
 2017-09-28 12:48:31 -06:00
Brian Homerding
0ce93d7333 Added hacckernels package (#5533) 2017-09-28 12:46:26 -06:00
lingnanyuan
d61e92b439 r-r6: Update version to 2.2.2 (#5529) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-r6: Update version to 2.2.2
 2017-09-28 12:46:11 -06:00
lingnanyuan
c0e1b1f68e r-shiny: update version to 1.0.5 (#5530) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-shiny: Update version to 1.0.5
 2017-09-28 11:31:27 -06:00
lingnanyuan
a613244602 r-htmltools: Update version to 0.3.6 (#5528) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-htmltools: Update version to 0.3.6
 2017-09-28 11:31:16 -06:00
lingnanyuan
0c385e94e6 r-httpuv: Update version to 1.3.5 (#5527) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-httpuv: Update version to 1.3.5
 2017-09-28 11:30:57 -06:00
lingnanyuan
38ea408126 r-rcpp: Update version to 0.12.13 (#5526) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-rcpp: Update version to 0.12.13

* r-rcpp: Correct url.
 2017-09-28 11:30:25 -06:00
Kelly (KT) Thompson
4e4247dd18 Provide a new Perl package 'cloc'. (#5525) 
+ Count, or compute differences of, physical lines of source code in the
  given files (may be archives such as compressed tarballs or zip files)
  and/or recursively below the given directories.
 2017-09-28 11:30:08 -06:00
lingnanyuan
e101665e5e r-jsonlite: Update version to 1.5 (#5524) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-jsonlite: Update version to 1.5
 2017-09-28 11:28:49 -06:00
lingnanyuan
4d445f8436 r-rda: new package. (#5523) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-rda: Create new package.
 2017-09-28 11:28:29 -06:00
Mark Olesen
cd825baee9 - build paraview without qt when osmesa is specified. (#5480) 
- new paraview version (5.4.1 from August)
 2017-09-27 22:32:10 -06:00
lingnanyuan
ab21d268be r-sfsmisc: new package. (#5516) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-sfsmisc: Create new package.

* r-sfsmisc: Correct format.
 2017-09-27 22:16:02 -06:00
Robert Pavel
b681146875 Added spackage for branson (#5520) 
Added spackage for branson proxy for monte carlo
 2017-09-27 21:50:07 -06:00
Gregory Lee
16bd1449be added qt creator version 4.4.0 (#5518) 2017-09-27 21:49:33 -06:00
lingnanyuan
d5fcbab8de r-varselrf: new package. (#5515) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-varselrf: Create new package.
 2017-09-27 21:48:22 -06:00
lingnanyuan
97208d9888 r-pamr: new package (#5514) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-pamr: Create new package.
 2017-09-27 21:48:04 -06:00
lingnanyuan
51e99c5fde r-rocr: new package. (#5513) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-rocr: Create new package.
 2017-09-27 21:47:47 -06:00
lingnanyuan
e7c0e12256 r-a4core: new package. (#5512) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-a4core: Create new package.

* r-a4core: Correct format.
 2017-09-27 21:47:12 -06:00
Yifan Zhu
98bb213fe2 r-simpleaffy: created new package (#5510) 2017-09-27 21:46:53 -06:00
Robert Pavel
48066a808e ExaMPM (#5509) 
* Added ExaMPM Spackage

* Removed template text
 2017-09-27 21:46:32 -06:00
Robert Pavel
2942ddc1e0 Added Support for BML 1.2.2 (#5502) 
* Added Support for BML 1.2.2

* Added checksums

* Update package.py
 2017-09-27 21:46:14 -06:00
Robert Pavel
e4f4f9a6e5 Added shards and intrepid(2) to trilinos (#5481) 
Added support for shards, intrepid, and intrepid2 variants to trilinos
spackage
 2017-09-27 21:41:53 -06:00
Robert Pavel
aa2a403536 Added CoEVP Spackage (#5485) 
* Added CoEVP Spackage

Added spackage for baseline (mpi, no other dependencies) CoEVP

* coevp: add more variants

* tag as proxy-app
 2017-09-27 21:41:34 -06:00
Sheng Di
3be81a0b10 SZ: add version 1.4.11 (#5517) 2017-09-27 16:30:43 -07:00
Christoph Junghans
f27aad68bf flann: fix build for 1.8.1 (#5508) 
* Update url_for_version for versions 1.8.1 and earlier
* Add python dependency when +python is enabled
 2017-09-27 14:39:33 -07:00
Christoph Junghans
83ab062583 lammps: add user-omp package (#5486) 
* Simplify cmake arg generation
* Set -DFFT when kspace variant is enabled
 2017-09-27 12:46:58 -07:00
Ken Raffenetti
c242165ebd Additional MPICH configs (#5259) 
* Add support for building develop version from git
* Add device and netmod variants
 2017-09-27 10:50:05 -07:00
lingnanyuan
90dd5e2932 r-gplots: Create New Package. (#5494) 
* r-gplots: Create New Package.

* r-gplots: Correct format.
 2017-09-27 10:20:17 -06:00
Michael Kuhn
ed6003b514 libbson, libmongoc: Update to 1.8.0 (#5478) 2017-09-27 10:19:10 -06:00
Yifan Zhu
df1606e84e r-rcurl: created new package (#5492) 2017-09-26 17:49:54 -06:00
lingnanyuan
618d3add4f r-annotate: new package. (#5490) 
* pr-quantities: add version & py-numpy conflict (#5307)

* r-annotate: Create new package.

* r-annotate: Create new package.
 2017-09-26 15:39:34 -06:00