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6991 commits

Author SHA1 Message Date
Eric
3cd3631fb6 DIAMOND: add version 0.9.22 (#9790) 2018-11-13 10:20:53 -06:00
Eric
4b63b93485 stringtie: add version 1.3.4d (#9791) 2018-11-13 10:20:30 -06:00
Hans Pabst
23c2d5af38 LIBXSMM 1.10 (#9813) 
* LIBXSMM 1.10

* Accurately replaced MD5 with SHA256 sums (libxsmm).
 2018-11-13 10:09:47 -06:00
Eric
fea0722daa aragorn: add version 1.2.36 (#9817) 2018-11-13 10:09:14 -06:00
Eric
5ba76cf908 minimap2: Add versions 2.10 and 2.14 (#9818) 
* Also add missing zlib dependency
 2018-11-13 10:08:42 -06:00
Quinn
2f454c5317 New Package: Nyancat (#9819) 
* nyancat: adding the most important piece of software ever written

* nyancat: some formatting updates

* nyancat: flake8 error fix
 2018-11-13 10:07:54 -06:00
Matthias Diener
6743aef554 charm++: add version 6.9.0 (#9827) 2018-11-13 10:03:22 -06:00
Christoph Junghans
78c7a8218c gromacs: added 2018.[34] (#9828) 2018-11-13 10:02:59 -06:00
Geoffrey Oxberry
f1e5f8e37b hypre: patch only @2.13.0 and @2.14.0 on darwin (#9832) 2018-11-13 09:54:09 -06:00
Michael Kuhn
3f0fc98062 wt: add missing pkgconfig dependency and fix boost version range (#9835) 
wt does not build with newer versions of boost.
 2018-11-13 09:53:44 -06:00
Michael Kuhn
59a6eada53 libssh: fix fetching and add 0.8.5 (#9779) 
Required for openssl@1.1 compatibility.
 2018-11-13 09:51:57 -06:00
Michael Kuhn
68222f2639 libevent: add 2.1.8 and 2.0.22 (#9777) 
- 2.1.8 is required for openssl@1.1 compatibility
- Introduce url_for_version since the URL has changed starting with
  version 2.0.22
 2018-11-13 09:51:26 -06:00
Valentin Clement (バレンタイン クレメン)
1388f6e907 Add new version 1.2.0 to the package (#9837) 2018-11-13 09:49:08 -06:00
Matthias Diener
86b7e6abc3 man-db: add missing gdbm dependency (#9751) 2018-11-13 09:41:43 -06:00
Michael Kuhn
cc928481f8 openssh: add 7.9p1 (#9782) 
- Required for openssl@1.1 compatibility
- Fix openssh's privilege separation path to be below the prefix
 2018-11-13 09:41:17 -06:00
Jon Rood
b4c7ffd424 Adding Paraview version 5.6. (#9788) 2018-11-13 09:36:18 -06:00
Michael Kuhn
86e00e7294 ruby: add 2.5.3 (#9793) 
Required for openssl@1.1 compatibility.
 2018-11-13 09:35:47 -06:00
Michael Kuhn
66ef3c2b18 thrift: add missing pkgconfig dependency (#9834) 
Without pkgconfig, Spack's openssl cannot be found.
 2018-11-13 09:34:51 -06:00
Eric
f48820a71e barrnap package: Add versions 0.6 and 0.7 (#9820) 2018-11-13 09:33:56 -06:00
Phil Tooley
16aa37bdfe New package: openimageio (#9715) 2018-11-13 00:14:29 -06:00
Phil Tooley
ff09fd5a85 New package: dcmtk (#9716) 2018-11-13 00:08:29 -06:00
Michael Kuhn
f56f6d4e38 Fix pkg-config dependencies (#9738) 
Replace dependencies on specific pkgconfig implementation (e.g. pkgconf)
with dependency on pkgconfig virtual package
 2018-11-13 00:01:41 -06:00
Michael Kuhn
077e509dda gplates package: improvements (#9735) 
- Add version 2.1.0
- Now that #9264 has been merged, gplates seems to build fine with newer
  versions of gcc (tested with gcc@8)
- When using the ninja generator, gplates can be built in parallel
 2018-11-12 23:56:59 -06:00
Alberto Chiusole
c7c3fab744 Add 'pic' variant to netcdf packages (#9605) 2018-11-12 23:54:11 -06:00
Peer-Timo Bremer
91302f89e4 TALASS package: replace old version with new version (#9703) 
New version has bug fixes
 2018-11-12 23:38:03 -06:00
Manav Bhatia
0b86675879 libMesh: new version and dependency updates (#9709) 
* added v1.3.1 checksum
* added vtk and petsc variants
* bugfix: enable petsc when slepc variant is specified
 2018-11-12 23:29:58 -06:00
Daniel Topa
79ad078f78 Open MPI: add versions 3.1.3, 3.0.3, update checksums (#9734) 
All checksums are now sha256
 2018-11-12 23:26:39 -06:00
Michael Kuhn
47d74f3bca pkgconf: Add 1.5.4 (#9737) 2018-11-12 23:22:34 -06:00
Matthias Diener
dbdee8e542 chrpath: add new package (#9708) 2018-11-12 23:21:56 -06:00
Phil Tooley
02cdfd654e version/dependency updates for ilmbase and openexr (#9714) 
* include zlib dependency for openexr, fixes #7274
* version bump to openexr/ilmbase 2.3.0
 2018-11-12 23:18:54 -06:00
Cameron Stanavige
230bdce34e new package: flatcc (#9695) 2018-11-12 23:11:52 -06:00
Axel Huebl
152346f275 nlohmann-json: add new version 3.4.0 (#9692) 2018-11-12 23:08:40 -06:00
Ross Miller
7c267e8534 py-numba: update dependencies and versions (#9706) 
The latest version of py-numba (0.40.1) wants a newer version of
py-llvmlite.  Had to add that version to py-llvmlite/package.py.
 2018-11-12 23:07:40 -06:00
Justin Stanley
87df41e0ca migrate: new package starting at 3.6.11 (#9707) 2018-11-12 23:05:54 -06:00
Sinan
9e67216593 new package: PyH5glance (#9700) 2018-11-12 18:55:49 -06:00
Sinan
ec7e5d3b8b new package: python htmlgen (#9699) 2018-11-12 18:47:04 -06:00
Denis Davydov
e04adbca66 gnuplot: add X11 dependency and QT terminal (#9722) 2018-11-12 18:45:27 -06:00
Justin Stanley
553cecaade r-manipulatewidget: new package at 0.10.0 (#9826) 2018-11-12 18:41:03 -06:00
Justin Stanley
2ee0d98be1 r-webshot: new package at 0.5.1 (#9824) 2018-11-12 18:38:48 -06:00
Levi Baber
dcb696bd3f r-callr: adding new dependencies (#9730) 2018-11-12 18:38:03 -06:00
Justin Stanley
5ed3873f2f r-convevol: new package at 1.3 (#9767) 2018-11-12 18:36:31 -06:00
Justin Stanley
8357c1e0bc r-miniui: new package at 0.1.1.1 (#9823) 2018-11-12 18:34:56 -06:00
Justin Stanley
407bfbc2cb r-clustergeneration: new package at 1.3.4 (#9765) 2018-11-12 18:34:03 -06:00
Jim Galarowicz
5dc0b65719 Update Dyninst package file for TBB dependency (#9728) 
* Update Dyninst package file for TBB dependency

Dyninst master and 10.0 release
versions require the tbb package.  This mod
updates the tbb versions adding the one that
dyninst uses and adds the required spack package
changes to dyninst/package.py.

* Put new version of tbb in proper location, per reviewer comment.

* Only depend on tbb if building the development version.

* Changes for the release of Dyninst 10.0.0
 2018-11-09 13:35:11 -08:00
Nichols A. Romero
236b34f3df Introduce fftw-api virtual package for Intel-MKL and FFTW (#9618) 
* Introduce FFTW2 and FFT3 providers for Intel-MKL and FFTW Spack packages.

* make fftw default package for fftw-api virtual package

* virtual package test assertion now provides location of default virtual packages.

* Change name of virtual package to fftw-api and used versioned interface.
 2018-11-09 08:16:11 -08:00
Todd Gamblin
0e60fcccfb utils: merge spack.environment into spack.util.environment 
- `spack.util.environment` is the new home for routines that modify
  environment variables.

- This is to make room for `spack.environment` to contain new routines
  for dealing with spack environments
 2018-11-09 00:31:24 -08:00
Justin Stanley
d1b17e8207 canu: use built-in makefile install (#9726) 2018-11-08 10:28:10 +01:00
Denis Davydov
8f4d6caf32 muparser: minor fixes to 2.2.5 and add 2.2.6 with CMake (#9724) 
* muparser: minor fixes to 2.2.5 and add 2.2.6 with CMake
* dealii: make muparser optional
 2018-11-08 10:05:52 +01:00
Michael Kuhn
da193a07a3 ncl: Add 6.5.0 (#9736) 2018-11-08 10:03:29 +01:00
Levi Baber
55b6105af7
r-delayedarray: new dep in latest vers (#9731) 2018-11-07 10:27:08 -06:00